Wall clock time and date at job start Wed Apr 1 2020 04:18:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 H 1.09000 * 109.47050 * 2 1
4 4 C 1.52999 * 109.46626 * 119.99699 * 2 1 3
5 5 C 1.50696 * 109.47750 * 294.99928 * 4 2 1
6 6 H 1.08002 * 119.99446 * 0.02562 * 5 4 2
7 7 C 1.37872 * 120.00217 * 180.02562 * 5 4 2
8 8 N 1.31515 * 120.00475 * 359.97438 * 7 5 4
9 9 Si 1.86808 * 119.99810 * 180.02562 * 7 5 4
10 10 H 1.48496 * 109.46959 * 359.97438 * 9 7 5
11 11 H 1.48498 * 109.47024 * 119.99774 * 9 7 5
12 12 H 1.48497 * 109.46795 * 239.99771 * 9 7 5
13 13 C 1.52997 * 109.47164 * 239.99996 * 2 1 3
14 14 N 1.46900 * 109.47171 * 65.00001 * 13 2 1
15 15 C 1.46904 * 110.99705 * 179.97438 * 14 13 2
16 16 C 1.50704 * 109.46884 * 179.97438 * 15 14 13
17 17 C 1.38253 * 120.00045 * 269.73198 * 16 15 14
18 18 C 1.38216 * 120.00075 * 179.80901 * 17 16 15
19 19 C 1.38257 * 119.99490 * 0.39872 * 18 17 16
20 20 C 1.38215 * 120.00549 * 359.85173 * 19 18 17
21 21 C 1.50696 * 120.00180 * 179.97438 * 20 19 18
22 22 C 1.53000 * 110.53512 * 269.27505 * 21 20 19
23 23 N 1.47316 * 110.59819 * 146.44746 * 21 20 19
24 24 C 1.34858 * 106.44067 * 241.52259 * 23 21 20
25 25 O 1.21541 * 123.73095 * 179.97438 * 24 23 21
26 26 N 1.33793 * 112.50022 * 359.85943 * 24 23 21
27 27 C 1.34770 * 111.64320 * 0.09470 * 26 24 23
28 28 O 1.21234 * 127.15680 * 180.02562 * 27 26 24
29 29 C 1.38216 * 119.99730 * 90.00048 * 16 15 14
30 30 H 1.09000 * 109.47050 * 179.97438 * 1 2 3
31 31 H 1.09001 * 109.46801 * 300.00112 * 1 2 3
32 32 H 1.09001 * 109.46998 * 59.99708 * 1 2 3
33 33 H 1.09002 * 109.47016 * 55.00506 * 4 2 1
34 34 H 1.09000 * 109.46709 * 175.00070 * 4 2 1
35 35 H 0.96993 * 120.00437 * 180.02562 * 8 7 5
36 36 H 1.09001 * 109.46992 * 185.00551 * 13 2 1
37 37 H 1.08998 * 109.47097 * 304.99739 * 13 2 1
38 38 H 1.00898 * 110.99922 * 303.95716 * 14 13 2
39 39 H 1.08998 * 109.47285 * 300.00060 * 15 14 13
40 40 H 1.09003 * 109.47029 * 60.00806 * 15 14 13
41 41 H 1.08000 * 120.00459 * 359.97438 * 17 16 15
42 42 H 1.07993 * 120.00284 * 180.22915 * 18 17 16
43 43 H 1.08006 * 119.99832 * 179.83172 * 19 18 17
44 44 H 1.08997 * 109.46947 * 59.99915 * 22 21 20
45 45 H 1.09001 * 109.47216 * 180.02562 * 22 21 20
46 46 H 1.08997 * 109.47465 * 300.00707 * 22 21 20
47 47 H 0.97004 * 126.68840 * 61.43771 * 23 21 20
48 48 H 0.97001 * 124.17800 * 180.12133 * 26 24 23
49 49 H 1.07999 * 119.99786 * 359.97438 * 29 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0399 -0.7212 1.2493
5 6 1.6413 0.0571 2.4766
6 1 1.0800 0.9742 2.3757
7 6 1.9931 -0.4017 3.7283
8 7 2.6762 -1.5188 3.8513
9 14 1.4983 0.5628 5.2497
10 1 0.7411 1.7738 4.8434
11 1 0.6449 -0.2869 6.1185
12 1 2.7161 0.9683 5.9964
13 6 2.0401 -0.7212 -1.2492
14 7 1.6515 0.0374 -2.4456
15 6 2.1259 -0.6266 -3.6671
16 6 1.7088 0.1785 -4.8709
17 6 0.4974 -0.0757 -5.4866
18 6 0.1131 0.6654 -6.5882
19 6 0.9440 1.6553 -7.0793
20 6 2.1574 1.9061 -6.4669
21 6 3.0632 2.9847 -7.0025
22 6 4.0292 2.4083 -8.0395
23 7 3.8050 3.6305 -5.9058
24 6 3.4400 4.9287 -5.9106
25 8 3.8684 5.7532 -5.1271
26 7 2.5559 5.2084 -6.8752
27 6 2.2501 4.1151 -7.6014
28 8 1.4845 4.0495 -8.5391
29 6 2.5400 1.1674 -5.3626
30 1 -0.3633 -1.0277 -0.0005
31 1 -0.3633 0.5139 0.8900
32 1 -0.3633 0.5139 -0.8900
33 1 1.6053 -1.7198 1.2952
34 1 3.1263 -0.7994 1.2057
35 1 2.9234 -1.8417 4.7318
36 1 3.1264 -0.7995 -1.2055
37 1 1.6055 -1.7198 -1.2951
38 1 0.6529 0.1793 -2.4752
39 1 3.2128 -0.7038 -3.6400
40 1 1.6921 -1.6246 -3.7300
41 1 -0.1499 -0.8516 -5.1053
42 1 -0.8348 0.4693 -7.0670
43 1 0.6450 2.2326 -7.9418
44 1 3.4620 1.9801 -8.8659
45 1 4.6755 3.2019 -8.4147
46 1 4.6387 1.6322 -7.5766
47 1 4.4311 3.2042 -5.2998
48 1 2.1817 6.0894 -7.0326
49 1 3.4881 1.3633 -4.8839
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001331054296.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:18:26
Heat of formation + Delta-G solvation = -57.445832 kcal
Electronic energy + Delta-G solvation = -29599.294941 eV
Core-core repulsion = 25525.268601 eV
Total energy + Delta-G solvation = -4074.026340 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.184 amu
Computer time = 1.12 seconds
Orbital eigenvalues (eV)
-43.67745 -40.50842 -39.76802 -38.39013 -37.55706 -35.97947 -35.35062 -34.09918
-32.49712 -31.86274 -30.48192 -28.90435 -27.46785 -26.20531 -25.83664 -24.16323
-23.98826 -23.37728 -22.67636 -21.14617 -20.57910 -19.44107 -18.55395 -18.13333
-17.82922 -17.32712 -17.15632 -16.88671 -16.61412 -16.54624 -16.05936 -15.76282
-15.69468 -15.39009 -15.26574 -14.78688 -14.58144 -14.42212 -14.16096 -13.97580
-13.60551 -13.47692 -13.31287 -13.21161 -13.09454 -13.04387 -12.76206 -12.59282
-12.37726 -12.23740 -12.15712 -11.94130 -11.85704 -11.54856 -11.49292 -11.28367
-11.06302 -10.93224 -10.65380 -10.53549 -9.80847 -9.77080 -9.29814 -8.17580
-6.26087 0.20782 0.38291 0.48345 1.33642 1.39186 1.40270 1.52818
1.87310 2.02992 2.41853 2.69550 2.80107 3.16033 3.22887 3.44256
3.76099 3.85936 3.99692 4.12452 4.20879 4.24982 4.25515 4.40845
4.46171 4.47579 4.59953 4.66437 4.70491 4.74699 4.81450 4.87370
4.97227 5.00918 5.04945 5.08319 5.11744 5.24776 5.38987 5.42256
5.49051 5.51465 5.56340 5.64156 5.71102 5.80297 5.80968 5.90360
5.97826 6.09209 6.27378 6.32256 6.48344 6.90144 7.03375 7.42135
8.94551
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.013821 B = 0.002120 C = 0.001954
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2025.401231 B =13204.549103 C =14326.547914
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.127 4.127
2 C -0.076 4.076
3 H 0.053 0.947
4 C 0.033 3.967
5 C -0.527 4.527
6 H 0.058 0.942
7 C -0.002 4.002
8 N -0.934 5.934
9 Si 0.958 3.042
10 H -0.264 1.264
11 H -0.279 1.279
12 H -0.280 1.280
13 C 0.078 3.922
14 N -0.686 5.686
15 C 0.097 3.903
16 C -0.084 4.084
17 C -0.108 4.108
18 C -0.117 4.117
19 C -0.117 4.117
20 C -0.103 4.103
21 C 0.171 3.829
22 C -0.141 4.141
23 N -0.703 5.703
24 C 0.707 3.293
25 O -0.579 6.579
26 N -0.670 5.670
27 C 0.541 3.459
28 O -0.476 6.476
29 C -0.079 4.079
30 H 0.042 0.958
31 H 0.042 0.958
32 H 0.064 0.936
33 H -0.009 1.009
34 H -0.012 1.012
35 H 0.262 0.738
36 H 0.061 0.939
37 H 0.027 0.973
38 H 0.343 0.657
39 H 0.083 0.917
40 H 0.045 0.955
41 H 0.134 0.866
42 H 0.144 0.856
43 H 0.138 0.862
44 H 0.091 0.909
45 H 0.079 0.921
46 H 0.097 0.903
47 H 0.450 0.550
48 H 0.441 0.559
49 H 0.132 0.868
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.865 5.920 -30.465 31.047
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.184 4.184
2 C -0.095 4.095
3 H 0.072 0.928
4 C -0.005 4.005
5 C -0.565 4.565
6 H 0.077 0.923
7 C -0.199 4.199
8 N -0.575 5.575
9 Si 0.783 3.217
10 H -0.188 1.188
11 H -0.204 1.204
12 H -0.206 1.206
13 C -0.051 4.051
14 N -0.318 5.318
15 C -0.032 4.032
16 C -0.085 4.085
17 C -0.126 4.126
18 C -0.135 4.135
19 C -0.136 4.136
20 C -0.104 4.104
21 C 0.081 3.919
22 C -0.199 4.199
23 N -0.368 5.368
24 C 0.406 3.594
25 O -0.455 6.455
26 N -0.341 5.341
27 C 0.327 3.673
28 O -0.346 6.346
29 C -0.098 4.098
30 H 0.061 0.939
31 H 0.061 0.939
32 H 0.083 0.917
33 H 0.010 0.990
34 H 0.006 0.994
35 H 0.071 0.929
36 H 0.080 0.920
37 H 0.045 0.955
38 H 0.162 0.838
39 H 0.101 0.899
40 H 0.063 0.937
41 H 0.152 0.848
42 H 0.162 0.838
43 H 0.155 0.845
44 H 0.109 0.891
45 H 0.098 0.902
46 H 0.116 0.884
47 H 0.297 0.703
48 H 0.285 0.715
49 H 0.150 0.850
Dipole moment (debyes) X Y Z Total
from point charges -0.403 6.551 -30.403 31.103
hybrid contribution -0.574 -0.269 1.485 1.615
sum -0.977 6.282 -28.918 29.608
Atomic orbital electron populations
1.21649 0.95146 1.00694 1.00904 1.21011 0.96093 0.98916 0.93437
0.92826 1.19006 0.94309 0.94591 0.92578 1.21666 1.34247 1.08468
0.92160 0.92332 1.25917 0.95329 0.96099 1.02551 1.70093 1.40368
1.22888 1.24192 0.85495 0.78083 0.78903 0.79172 1.18768 1.20450
1.20587 1.21843 0.99839 0.94246 0.89166 1.60546 1.20147 1.50253
1.00863 1.20916 1.01188 0.94412 0.86645 1.19795 0.95158 0.97228
0.96290 1.21371 0.95705 0.99774 0.95765 1.21328 1.00345 0.95352
0.96443 1.21407 0.93349 0.98409 1.00410 1.19333 0.95596 0.97675
0.97814 1.20190 0.92203 0.90890 0.88639 1.22067 0.98066 1.02730
0.97004 1.45749 1.47635 1.07347 1.36100 1.16000 0.78984 0.83936
0.80479 1.91066 1.60125 1.51150 1.43136 1.44212 1.42980 1.15079
1.31832 1.20717 0.80539 0.84761 0.81254 1.90795 1.34138 1.83729
1.25908 1.20785 1.00302 0.94207 0.94498 0.93856 0.93852 0.91734
0.99025 0.99359 0.92946 0.92043 0.95520 0.83802 0.89877 0.93668
0.84824 0.83787 0.84481 0.89064 0.90181 0.88418 0.70306 0.71466
0.85017
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -4.54 8.77 71.98 0.63 -3.91 16
2 C -0.08 -3.04 2.55 -10.79 -0.03 -3.06 16
3 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16
4 C 0.03 1.70 4.45 29.85 0.13 1.84 16
5 C -0.53 -29.87 8.41 25.60 0.22 -29.65 16
6 H 0.06 3.22 7.06 -2.91 -0.02 3.20 16
7 C 0.00 -0.10 5.46 84.65 0.46 0.36 16
8 N -0.93 -57.03 13.29 21.45 0.28 -56.74 16
9 Si 0.96 44.77 29.54 68.60 2.03 46.80 16
10 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16
11 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16
12 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16
13 C 0.08 2.53 5.14 86.30 0.44 2.97 16
14 N -0.69 -17.77 6.49 -517.92 -3.36 -21.13 16
15 C 0.10 1.95 5.81 85.56 0.50 2.44 16
16 C -0.08 -1.49 5.39 -19.86 -0.11 -1.60 16
17 C -0.11 -1.70 9.70 22.27 0.22 -1.49 16
18 C -0.12 -1.69 10.05 22.27 0.22 -1.47 16
19 C -0.12 -1.80 9.18 22.27 0.20 -1.60 16
20 C -0.10 -1.52 4.88 -19.87 -0.10 -1.62 16
21 C 0.17 2.08 1.16 2.23 0.00 2.08 16
22 C -0.14 -1.03 8.96 71.98 0.65 -0.38 16
23 N -0.70 -9.39 5.35 -442.78 -2.37 -11.76 16
24 C 0.71 13.15 9.00 179.33 1.61 14.76 16
25 O -0.58 -15.68 18.04 -3.84 -0.07 -15.75 16
26 N -0.67 -9.58 5.70 -440.87 -2.51 -12.09 16
27 C 0.54 7.96 6.98 87.94 0.61 8.58 16
28 O -0.48 -8.55 15.91 -2.89 -0.05 -8.59 16
29 C -0.08 -1.27 9.00 22.27 0.20 -1.07 16
30 H 0.04 1.51 8.14 -2.39 -0.02 1.50 16
31 H 0.04 1.71 6.95 -2.39 -0.02 1.69 16
32 H 0.06 1.87 6.68 -2.39 -0.02 1.86 16
33 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16
34 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16
35 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16
36 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16
37 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16
38 H 0.34 8.48 6.98 -89.70 -0.63 7.86 16
39 H 0.08 1.62 8.09 -2.39 -0.02 1.60 16
40 H 0.05 0.86 8.08 -2.39 -0.02 0.84 16
41 H 0.13 1.78 8.06 -2.91 -0.02 1.76 16
42 H 0.14 1.50 8.06 -2.91 -0.02 1.47 16
43 H 0.14 2.12 5.69 -2.91 -0.02 2.10 16
44 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16
45 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16
46 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16
47 H 0.45 4.79 8.14 -92.71 -0.75 4.04 16
48 H 0.44 4.69 8.96 -92.71 -0.83 3.85 16
49 H 0.13 1.84 7.02 -2.91 -0.02 1.82 16
Total: -1.00 -72.58 401.89 -1.39 -73.97
By element:
Atomic # 1 Polarization: 19.33 SS G_CDS: -1.21 Total: 18.12 kcal
Atomic # 6 Polarization: -18.68 SS G_CDS: 5.87 Total: -12.81 kcal
Atomic # 7 Polarization: -93.77 SS G_CDS: -7.96 Total: -101.73 kcal
Atomic # 8 Polarization: -24.23 SS G_CDS: -0.12 Total: -24.34 kcal
Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal
Total: -72.58 -1.39 -73.97 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001331054296.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 16.520 kcal
(2) G-P(sol) polarization free energy of solvation -72.577 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.057 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.389 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.966 kcal
(6) G-S(sol) free energy of system = (1) + (5) -57.446 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.12 seconds