Wall clock time and date at job start Wed Apr 1 2020 04:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52999 * 109.46626 * 119.99699 * 2 1 3 5 5 C 1.50696 * 109.47750 * 294.99928 * 4 2 1 6 6 H 1.08002 * 119.99446 * 0.02562 * 5 4 2 7 7 C 1.37872 * 120.00217 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00475 * 359.97438 * 7 5 4 9 9 Si 1.86808 * 119.99810 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.46959 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47024 * 119.99774 * 9 7 5 12 12 H 1.48497 * 109.46795 * 239.99771 * 9 7 5 13 13 C 1.52997 * 109.47164 * 239.99996 * 2 1 3 14 14 N 1.46900 * 109.47171 * 65.00001 * 13 2 1 15 15 C 1.46904 * 110.99705 * 179.97438 * 14 13 2 16 16 C 1.50704 * 109.46884 * 179.97438 * 15 14 13 17 17 C 1.38253 * 120.00045 * 269.73198 * 16 15 14 18 18 C 1.38216 * 120.00075 * 179.80901 * 17 16 15 19 19 C 1.38257 * 119.99490 * 0.39872 * 18 17 16 20 20 C 1.38215 * 120.00549 * 359.85173 * 19 18 17 21 21 C 1.50696 * 120.00180 * 179.97438 * 20 19 18 22 22 C 1.53000 * 110.53512 * 269.27505 * 21 20 19 23 23 N 1.47316 * 110.59819 * 146.44746 * 21 20 19 24 24 C 1.34858 * 106.44067 * 241.52259 * 23 21 20 25 25 O 1.21541 * 123.73095 * 179.97438 * 24 23 21 26 26 N 1.33793 * 112.50022 * 359.85943 * 24 23 21 27 27 C 1.34770 * 111.64320 * 0.09470 * 26 24 23 28 28 O 1.21234 * 127.15680 * 180.02562 * 27 26 24 29 29 C 1.38216 * 119.99730 * 90.00048 * 16 15 14 30 30 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 32 32 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 33 33 H 1.09002 * 109.47016 * 55.00506 * 4 2 1 34 34 H 1.09000 * 109.46709 * 175.00070 * 4 2 1 35 35 H 0.96993 * 120.00437 * 180.02562 * 8 7 5 36 36 H 1.09001 * 109.46992 * 185.00551 * 13 2 1 37 37 H 1.08998 * 109.47097 * 304.99739 * 13 2 1 38 38 H 1.00898 * 110.99922 * 303.95716 * 14 13 2 39 39 H 1.08998 * 109.47285 * 300.00060 * 15 14 13 40 40 H 1.09003 * 109.47029 * 60.00806 * 15 14 13 41 41 H 1.08000 * 120.00459 * 359.97438 * 17 16 15 42 42 H 1.07993 * 120.00284 * 180.22915 * 18 17 16 43 43 H 1.08006 * 119.99832 * 179.83172 * 19 18 17 44 44 H 1.08997 * 109.46947 * 59.99915 * 22 21 20 45 45 H 1.09001 * 109.47216 * 180.02562 * 22 21 20 46 46 H 1.08997 * 109.47465 * 300.00707 * 22 21 20 47 47 H 0.97004 * 126.68840 * 61.43771 * 23 21 20 48 48 H 0.97001 * 124.17800 * 180.12133 * 26 24 23 49 49 H 1.07999 * 119.99786 * 359.97438 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6413 0.0571 2.4766 6 1 1.0800 0.9742 2.3757 7 6 1.9931 -0.4017 3.7283 8 7 2.6762 -1.5188 3.8513 9 14 1.4983 0.5628 5.2497 10 1 0.7411 1.7738 4.8434 11 1 0.6449 -0.2869 6.1185 12 1 2.7161 0.9683 5.9964 13 6 2.0401 -0.7212 -1.2492 14 7 1.6515 0.0374 -2.4456 15 6 2.1259 -0.6266 -3.6671 16 6 1.7088 0.1785 -4.8709 17 6 0.4974 -0.0757 -5.4866 18 6 0.1131 0.6654 -6.5882 19 6 0.9440 1.6553 -7.0793 20 6 2.1574 1.9061 -6.4669 21 6 3.0632 2.9847 -7.0025 22 6 4.0292 2.4083 -8.0395 23 7 3.8050 3.6305 -5.9058 24 6 3.4400 4.9287 -5.9106 25 8 3.8684 5.7532 -5.1271 26 7 2.5559 5.2084 -6.8752 27 6 2.2501 4.1151 -7.6014 28 8 1.4845 4.0495 -8.5391 29 6 2.5400 1.1674 -5.3626 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.6053 -1.7198 1.2952 34 1 3.1263 -0.7994 1.2057 35 1 2.9234 -1.8417 4.7318 36 1 3.1264 -0.7995 -1.2055 37 1 1.6055 -1.7198 -1.2951 38 1 0.6529 0.1793 -2.4752 39 1 3.2128 -0.7038 -3.6400 40 1 1.6921 -1.6246 -3.7300 41 1 -0.1499 -0.8516 -5.1053 42 1 -0.8348 0.4693 -7.0670 43 1 0.6450 2.2326 -7.9418 44 1 3.4620 1.9801 -8.8659 45 1 4.6755 3.2019 -8.4147 46 1 4.6387 1.6322 -7.5766 47 1 4.4311 3.2042 -5.2998 48 1 2.1817 6.0894 -7.0326 49 1 3.4881 1.3633 -4.8839 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331054296.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:26 Heat of formation + Delta-G solvation = -57.445832 kcal Electronic energy + Delta-G solvation = -29599.294941 eV Core-core repulsion = 25525.268601 eV Total energy + Delta-G solvation = -4074.026340 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.67745 -40.50842 -39.76802 -38.39013 -37.55706 -35.97947 -35.35062 -34.09918 -32.49712 -31.86274 -30.48192 -28.90435 -27.46785 -26.20531 -25.83664 -24.16323 -23.98826 -23.37728 -22.67636 -21.14617 -20.57910 -19.44107 -18.55395 -18.13333 -17.82922 -17.32712 -17.15632 -16.88671 -16.61412 -16.54624 -16.05936 -15.76282 -15.69468 -15.39009 -15.26574 -14.78688 -14.58144 -14.42212 -14.16096 -13.97580 -13.60551 -13.47692 -13.31287 -13.21161 -13.09454 -13.04387 -12.76206 -12.59282 -12.37726 -12.23740 -12.15712 -11.94130 -11.85704 -11.54856 -11.49292 -11.28367 -11.06302 -10.93224 -10.65380 -10.53549 -9.80847 -9.77080 -9.29814 -8.17580 -6.26087 0.20782 0.38291 0.48345 1.33642 1.39186 1.40270 1.52818 1.87310 2.02992 2.41853 2.69550 2.80107 3.16033 3.22887 3.44256 3.76099 3.85936 3.99692 4.12452 4.20879 4.24982 4.25515 4.40845 4.46171 4.47579 4.59953 4.66437 4.70491 4.74699 4.81450 4.87370 4.97227 5.00918 5.04945 5.08319 5.11744 5.24776 5.38987 5.42256 5.49051 5.51465 5.56340 5.64156 5.71102 5.80297 5.80968 5.90360 5.97826 6.09209 6.27378 6.32256 6.48344 6.90144 7.03375 7.42135 8.94551 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013821 B = 0.002120 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.401231 B =13204.549103 C =14326.547914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.076 4.076 3 H 0.053 0.947 4 C 0.033 3.967 5 C -0.527 4.527 6 H 0.058 0.942 7 C -0.002 4.002 8 N -0.934 5.934 9 Si 0.958 3.042 10 H -0.264 1.264 11 H -0.279 1.279 12 H -0.280 1.280 13 C 0.078 3.922 14 N -0.686 5.686 15 C 0.097 3.903 16 C -0.084 4.084 17 C -0.108 4.108 18 C -0.117 4.117 19 C -0.117 4.117 20 C -0.103 4.103 21 C 0.171 3.829 22 C -0.141 4.141 23 N -0.703 5.703 24 C 0.707 3.293 25 O -0.579 6.579 26 N -0.670 5.670 27 C 0.541 3.459 28 O -0.476 6.476 29 C -0.079 4.079 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.064 0.936 33 H -0.009 1.009 34 H -0.012 1.012 35 H 0.262 0.738 36 H 0.061 0.939 37 H 0.027 0.973 38 H 0.343 0.657 39 H 0.083 0.917 40 H 0.045 0.955 41 H 0.134 0.866 42 H 0.144 0.856 43 H 0.138 0.862 44 H 0.091 0.909 45 H 0.079 0.921 46 H 0.097 0.903 47 H 0.450 0.550 48 H 0.441 0.559 49 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.865 5.920 -30.465 31.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.095 4.095 3 H 0.072 0.928 4 C -0.005 4.005 5 C -0.565 4.565 6 H 0.077 0.923 7 C -0.199 4.199 8 N -0.575 5.575 9 Si 0.783 3.217 10 H -0.188 1.188 11 H -0.204 1.204 12 H -0.206 1.206 13 C -0.051 4.051 14 N -0.318 5.318 15 C -0.032 4.032 16 C -0.085 4.085 17 C -0.126 4.126 18 C -0.135 4.135 19 C -0.136 4.136 20 C -0.104 4.104 21 C 0.081 3.919 22 C -0.199 4.199 23 N -0.368 5.368 24 C 0.406 3.594 25 O -0.455 6.455 26 N -0.341 5.341 27 C 0.327 3.673 28 O -0.346 6.346 29 C -0.098 4.098 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.083 0.917 33 H 0.010 0.990 34 H 0.006 0.994 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.045 0.955 38 H 0.162 0.838 39 H 0.101 0.899 40 H 0.063 0.937 41 H 0.152 0.848 42 H 0.162 0.838 43 H 0.155 0.845 44 H 0.109 0.891 45 H 0.098 0.902 46 H 0.116 0.884 47 H 0.297 0.703 48 H 0.285 0.715 49 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.403 6.551 -30.403 31.103 hybrid contribution -0.574 -0.269 1.485 1.615 sum -0.977 6.282 -28.918 29.608 Atomic orbital electron populations 1.21649 0.95146 1.00694 1.00904 1.21011 0.96093 0.98916 0.93437 0.92826 1.19006 0.94309 0.94591 0.92578 1.21666 1.34247 1.08468 0.92160 0.92332 1.25917 0.95329 0.96099 1.02551 1.70093 1.40368 1.22888 1.24192 0.85495 0.78083 0.78903 0.79172 1.18768 1.20450 1.20587 1.21843 0.99839 0.94246 0.89166 1.60546 1.20147 1.50253 1.00863 1.20916 1.01188 0.94412 0.86645 1.19795 0.95158 0.97228 0.96290 1.21371 0.95705 0.99774 0.95765 1.21328 1.00345 0.95352 0.96443 1.21407 0.93349 0.98409 1.00410 1.19333 0.95596 0.97675 0.97814 1.20190 0.92203 0.90890 0.88639 1.22067 0.98066 1.02730 0.97004 1.45749 1.47635 1.07347 1.36100 1.16000 0.78984 0.83936 0.80479 1.91066 1.60125 1.51150 1.43136 1.44212 1.42980 1.15079 1.31832 1.20717 0.80539 0.84761 0.81254 1.90795 1.34138 1.83729 1.25908 1.20785 1.00302 0.94207 0.94498 0.93856 0.93852 0.91734 0.99025 0.99359 0.92946 0.92043 0.95520 0.83802 0.89877 0.93668 0.84824 0.83787 0.84481 0.89064 0.90181 0.88418 0.70306 0.71466 0.85017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.54 8.77 71.98 0.63 -3.91 16 2 C -0.08 -3.04 2.55 -10.79 -0.03 -3.06 16 3 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 4 C 0.03 1.70 4.45 29.85 0.13 1.84 16 5 C -0.53 -29.87 8.41 25.60 0.22 -29.65 16 6 H 0.06 3.22 7.06 -2.91 -0.02 3.20 16 7 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 8 N -0.93 -57.03 13.29 21.45 0.28 -56.74 16 9 Si 0.96 44.77 29.54 68.60 2.03 46.80 16 10 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 12 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 13 C 0.08 2.53 5.14 86.30 0.44 2.97 16 14 N -0.69 -17.77 6.49 -517.92 -3.36 -21.13 16 15 C 0.10 1.95 5.81 85.56 0.50 2.44 16 16 C -0.08 -1.49 5.39 -19.86 -0.11 -1.60 16 17 C -0.11 -1.70 9.70 22.27 0.22 -1.49 16 18 C -0.12 -1.69 10.05 22.27 0.22 -1.47 16 19 C -0.12 -1.80 9.18 22.27 0.20 -1.60 16 20 C -0.10 -1.52 4.88 -19.87 -0.10 -1.62 16 21 C 0.17 2.08 1.16 2.23 0.00 2.08 16 22 C -0.14 -1.03 8.96 71.98 0.65 -0.38 16 23 N -0.70 -9.39 5.35 -442.78 -2.37 -11.76 16 24 C 0.71 13.15 9.00 179.33 1.61 14.76 16 25 O -0.58 -15.68 18.04 -3.84 -0.07 -15.75 16 26 N -0.67 -9.58 5.70 -440.87 -2.51 -12.09 16 27 C 0.54 7.96 6.98 87.94 0.61 8.58 16 28 O -0.48 -8.55 15.91 -2.89 -0.05 -8.59 16 29 C -0.08 -1.27 9.00 22.27 0.20 -1.07 16 30 H 0.04 1.51 8.14 -2.39 -0.02 1.50 16 31 H 0.04 1.71 6.95 -2.39 -0.02 1.69 16 32 H 0.06 1.87 6.68 -2.39 -0.02 1.86 16 33 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 34 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 35 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 36 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.34 8.48 6.98 -89.70 -0.63 7.86 16 39 H 0.08 1.62 8.09 -2.39 -0.02 1.60 16 40 H 0.05 0.86 8.08 -2.39 -0.02 0.84 16 41 H 0.13 1.78 8.06 -2.91 -0.02 1.76 16 42 H 0.14 1.50 8.06 -2.91 -0.02 1.47 16 43 H 0.14 2.12 5.69 -2.91 -0.02 2.10 16 44 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 45 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 46 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 47 H 0.45 4.79 8.14 -92.71 -0.75 4.04 16 48 H 0.44 4.69 8.96 -92.71 -0.83 3.85 16 49 H 0.13 1.84 7.02 -2.91 -0.02 1.82 16 Total: -1.00 -72.58 401.89 -1.39 -73.97 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: -1.21 Total: 18.12 kcal Atomic # 6 Polarization: -18.68 SS G_CDS: 5.87 Total: -12.81 kcal Atomic # 7 Polarization: -93.77 SS G_CDS: -7.96 Total: -101.73 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: -0.12 Total: -24.34 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -72.58 -1.39 -73.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331054296.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.520 kcal (2) G-P(sol) polarization free energy of solvation -72.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds