Wall clock time and date at job start Wed Apr 1 2020 03:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.78379 * 2 1 4 4 C 1.52789 * 109.55399 * 239.76620 * 2 1 3 5 5 N 1.46898 * 109.41936 * 186.61127 * 4 2 1 6 6 C 1.46894 * 111.00041 * 187.11714 * 5 4 2 7 7 C 1.50707 * 109.47191 * 65.69696 * 6 5 4 8 8 C 1.38407 * 119.84410 * 90.00529 * 7 6 5 9 9 C 1.38130 * 120.18759 * 179.97438 * 8 7 6 10 10 C 1.38612 * 119.82037 * 359.97438 * 9 8 7 11 11 C 1.39463 * 120.03470 * 0.02562 * 10 9 8 12 12 C 1.38117 * 119.84372 * 269.72537 * 7 6 5 13 13 O 1.35562 * 107.27491 * 179.97438 * 11 10 9 14 14 C 1.34224 * 109.17852 * 359.97438 * 13 11 10 15 15 O 1.21599 * 125.27325 * 179.97438 * 14 13 11 16 16 N 1.34781 * 109.45148 * 0.02562 * 14 13 11 17 17 C 1.46499 * 126.25569 * 179.97438 * 16 14 13 18 18 C 1.46894 * 111.26932 * 62.96477 * 5 4 2 19 19 C 1.53234 * 109.34330 * 296.89461 * 18 5 4 20 20 H 1.09002 * 109.79039 * 294.02444 * 19 18 5 21 21 C 1.53000 * 109.62889 * 173.53884 * 19 18 5 22 22 N 1.47077 * 108.52349 * 53.83069 * 19 18 5 23 23 C 1.36933 * 120.88616 * 128.81552 * 22 19 18 24 24 H 1.08001 * 119.99502 * 308.48582 * 23 22 19 25 25 C 1.38808 * 120.00343 * 128.48527 * 23 22 19 26 26 N 1.31619 * 119.99798 * 338.24545 * 25 23 22 27 27 Si 1.86793 * 120.00363 * 158.24557 * 25 23 22 28 28 H 1.48499 * 109.47396 * 179.97438 * 27 25 23 29 29 H 1.48498 * 109.47397 * 300.00251 * 27 25 23 30 30 H 1.48504 * 109.47027 * 60.00067 * 27 25 23 31 31 H 1.08997 * 109.47157 * 307.66292 * 1 2 3 32 32 H 1.09000 * 109.47503 * 67.66646 * 1 2 3 33 33 H 1.09003 * 109.47319 * 187.66482 * 1 2 3 34 34 H 1.08997 * 109.56307 * 66.55671 * 4 2 1 35 35 H 1.08998 * 109.36446 * 306.53969 * 4 2 1 36 36 H 1.08997 * 109.47588 * 185.69517 * 6 5 4 37 37 H 1.09003 * 109.47150 * 305.70273 * 6 5 4 38 38 H 1.08003 * 119.90652 * 359.97438 * 8 7 6 39 39 H 1.07997 * 120.08925 * 179.97438 * 9 8 7 40 40 H 1.08011 * 120.04347 * 0.02562 * 12 7 6 41 41 H 1.09003 * 109.47394 * 269.99973 * 17 16 14 42 42 H 1.09011 * 109.47239 * 29.99777 * 17 16 14 43 43 H 1.09004 * 109.47543 * 149.99664 * 17 16 14 44 44 H 1.09002 * 109.49105 * 176.93358 * 18 5 4 45 45 H 1.08998 * 109.49509 * 56.85719 * 18 5 4 46 46 H 1.09004 * 109.47199 * 300.97035 * 21 19 18 47 47 H 1.09005 * 109.47212 * 60.97157 * 21 19 18 48 48 H 1.09001 * 109.47144 * 180.97371 * 21 19 18 49 49 H 0.96996 * 120.00144 * 175.07008 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0256 0.0000 4 6 2.0414 -0.7250 -1.2439 5 7 3.5017 -0.8626 -1.1633 6 6 4.0494 -1.4025 -2.4148 7 6 3.8365 -0.4078 -3.5268 8 6 4.8006 0.5504 -3.7877 9 6 4.6130 1.4652 -4.8055 10 6 3.4555 1.4215 -5.5669 11 6 2.4835 0.4564 -5.3047 12 6 2.6829 -0.4603 -4.2844 13 8 1.4757 0.6490 -6.1907 14 6 1.7799 1.6868 -6.9858 15 8 1.0795 2.1118 -7.8844 16 7 2.9823 2.1840 -6.6344 17 6 3.6672 3.3181 -7.2598 18 6 3.8963 -1.6901 -0.0156 19 6 3.4619 -0.9994 1.2814 20 1 4.0199 -0.0720 1.4105 21 6 3.7240 -1.9264 2.4701 22 7 2.0240 -0.7028 1.1939 23 6 1.1671 -1.0760 2.1946 24 1 1.1626 -2.0962 2.5490 25 6 0.3044 -0.1433 2.7536 26 7 0.5736 1.1416 2.6591 27 14 -1.2386 -0.7115 3.6398 28 1 -1.9842 0.4702 4.1427 29 1 -2.0969 -1.4754 2.6992 30 1 -0.8611 -1.5810 4.7829 31 1 -0.3633 0.6279 0.8135 32 1 -0.3634 0.3905 -0.9506 33 1 -0.3634 -1.0185 0.1371 34 1 1.7785 -0.1529 -2.1337 35 1 1.5854 -1.7134 -1.2992 36 1 5.1165 -1.5891 -2.2938 37 1 3.5428 -2.3358 -2.6604 38 1 5.7021 0.5829 -3.1939 39 1 5.3661 2.2124 -5.0075 40 1 1.9352 -1.2124 -4.0796 41 1 4.2949 2.9587 -8.0753 42 1 2.9286 4.0178 -7.6512 43 1 4.2876 3.8217 -6.5185 44 1 4.9788 -1.8181 -0.0146 45 1 3.4145 -2.6652 -0.0874 46 1 3.1703 -2.8556 2.3352 47 1 4.7901 -2.1446 2.5326 48 1 3.3982 -1.4396 3.3893 49 1 -0.0634 1.7960 2.9860 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331567718.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:20 Heat of formation + Delta-G solvation = 26.011862 kcal Electronic energy + Delta-G solvation = -31187.074860 eV Core-core repulsion = 27116.667518 eV Total energy + Delta-G solvation = -4070.407343 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -43.40760 -39.37723 -38.25972 -37.59147 -36.30898 -34.75676 -32.83850 -31.60850 -30.91846 -30.28451 -28.46004 -27.57332 -26.13097 -25.85427 -24.37547 -23.66502 -22.38040 -21.98515 -21.07680 -20.27334 -19.09287 -18.45993 -17.81327 -17.66436 -16.51445 -16.26376 -15.39082 -15.36258 -15.09127 -14.70538 -14.66637 -14.47326 -14.33849 -14.26841 -13.93071 -13.52386 -13.34599 -13.31967 -12.88789 -12.84122 -12.27857 -12.18352 -12.00954 -11.79579 -11.57306 -11.41288 -11.36254 -11.11294 -11.08526 -10.78538 -10.75336 -10.55976 -10.48419 -10.37178 -10.12066 -9.81895 -9.75267 -9.45478 -8.96508 -8.28300 -8.10316 -7.84912 -6.38089 -5.69451 -3.49305 0.86818 0.97323 1.87086 2.27022 2.64508 3.31846 3.34681 3.41652 3.44190 4.11094 4.27642 4.41140 4.48635 4.65861 4.74507 4.86248 4.95277 5.07325 5.09877 5.16878 5.24207 5.33157 5.40899 5.53790 5.60489 5.73338 5.82557 5.88197 5.97063 6.03714 6.10264 6.16336 6.20724 6.33651 6.37068 6.39374 6.43212 6.47801 6.59365 6.72308 6.83630 6.96190 6.99593 7.15738 7.20754 7.42740 7.49136 7.53158 7.65075 7.74304 7.88531 8.62171 9.23033 9.77780 10.55656 11.19641 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014939 B = 0.002924 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.837122 B = 9572.744161 C =10701.168845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.200 3.800 3 H 0.034 0.966 4 C 0.039 3.961 5 N -0.528 5.528 6 C 0.092 3.908 7 C -0.053 4.053 8 C -0.074 4.074 9 C -0.101 4.101 10 C 0.062 3.938 11 C 0.034 3.966 12 C -0.071 4.071 13 O -0.236 6.236 14 C 0.634 3.366 15 O -0.494 6.494 16 N -0.550 5.550 17 C 0.101 3.899 18 C 0.049 3.951 19 C 0.172 3.828 20 H 0.032 0.968 21 C -0.130 4.130 22 N -0.579 5.579 23 C -0.263 4.263 24 H 0.051 0.949 25 C 0.037 3.963 26 N -0.871 5.871 27 Si 0.878 3.122 28 H -0.290 1.290 29 H -0.280 1.280 30 H -0.279 1.279 31 H 0.086 0.914 32 H 0.021 0.979 33 H 0.048 0.952 34 H 0.062 0.938 35 H 0.027 0.973 36 H 0.084 0.916 37 H 0.041 0.959 38 H 0.142 0.858 39 H 0.134 0.866 40 H 0.139 0.861 41 H 0.072 0.928 42 H 0.089 0.911 43 H 0.087 0.913 44 H 0.061 0.939 45 H 0.028 0.972 46 H 0.047 0.953 47 H 0.035 0.965 48 H 0.065 0.935 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.639 -0.395 -15.359 19.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.094 3.906 3 H 0.052 0.948 4 C -0.090 4.090 5 N -0.252 5.252 6 C -0.036 4.036 7 C -0.054 4.054 8 C -0.093 4.093 9 C -0.122 4.122 10 C -0.035 4.035 11 C -0.012 4.012 12 C -0.090 4.090 13 O -0.141 6.141 14 C 0.390 3.610 15 O -0.378 6.378 16 N -0.283 5.283 17 C -0.039 4.039 18 C -0.080 4.080 19 C 0.066 3.934 20 H 0.050 0.950 21 C -0.188 4.188 22 N -0.303 5.303 23 C -0.393 4.393 24 H 0.069 0.931 25 C -0.165 4.165 26 N -0.511 5.511 27 Si 0.706 3.294 28 H -0.216 1.216 29 H -0.206 1.206 30 H -0.205 1.205 31 H 0.104 0.896 32 H 0.040 0.960 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.045 0.955 36 H 0.103 0.897 37 H 0.059 0.941 38 H 0.159 0.841 39 H 0.152 0.848 40 H 0.157 0.843 41 H 0.091 0.909 42 H 0.108 0.892 43 H 0.106 0.894 44 H 0.080 0.920 45 H 0.047 0.953 46 H 0.066 0.934 47 H 0.054 0.946 48 H 0.084 0.916 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 11.172 0.414 -15.737 19.304 hybrid contribution -1.314 -0.770 0.130 1.529 sum 9.858 -0.357 -15.607 18.463 Atomic orbital electron populations 1.21982 0.95870 1.02200 1.00032 1.20160 0.92682 0.93902 0.83850 0.94822 1.22885 0.85956 0.99450 1.00738 1.61959 1.12270 1.49969 1.00972 1.21049 1.00820 0.93278 0.88426 1.19577 0.92755 0.97511 0.95597 1.20896 0.99713 0.93147 0.95593 1.20041 0.94937 1.01203 0.95989 1.18517 0.97553 0.94485 0.92970 1.18889 0.86815 0.99847 0.95649 1.19961 0.98511 0.98086 0.92445 1.84993 1.41363 1.46326 1.41410 1.18523 0.81304 0.79027 0.82183 1.91139 1.54790 1.62186 1.29679 1.45662 1.19071 1.31790 1.31732 1.21789 0.97771 0.85961 0.98342 1.22716 0.98556 0.94569 0.92126 1.20529 0.87482 0.95039 0.90350 0.95020 1.21706 0.97969 0.99555 0.99605 1.44037 1.00690 1.68156 1.17452 1.18608 1.15698 0.92240 1.12723 0.93137 1.25436 1.00237 0.95195 0.95667 1.70197 1.33634 0.99994 1.47226 0.86812 0.84499 0.78029 0.80083 1.21554 1.20557 1.20510 0.89595 0.95966 0.93322 0.91932 0.95511 0.89745 0.94104 0.84069 0.84829 0.84311 0.90903 0.89186 0.89400 0.92049 0.95337 0.93351 0.94623 0.91552 0.93619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 7.93 37.16 0.29 -2.93 16 2 C 0.20 4.50 3.16 -67.72 -0.21 4.28 16 3 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 4 C 0.04 0.71 4.60 -3.93 -0.02 0.69 16 5 N -0.53 -8.47 4.62 -236.07 -1.09 -9.56 16 6 C 0.09 1.11 5.12 -4.98 -0.03 1.08 16 7 C -0.05 -0.60 4.88 -104.60 -0.51 -1.11 16 8 C -0.07 -0.72 9.69 -39.56 -0.38 -1.11 16 9 C -0.10 -0.93 10.04 -39.48 -0.40 -1.32 16 10 C 0.06 0.70 6.84 -83.79 -0.57 0.13 16 11 C 0.03 0.45 7.35 -38.99 -0.29 0.16 16 12 C -0.07 -0.86 7.87 -39.49 -0.31 -1.17 16 13 O -0.24 -3.47 10.72 -21.98 -0.24 -3.71 16 14 C 0.63 9.12 9.07 54.06 0.49 9.61 16 15 O -0.49 -8.21 17.81 -19.01 -0.34 -8.55 16 16 N -0.55 -6.15 3.21 -126.43 -0.41 -6.56 16 17 C 0.10 0.69 11.06 59.85 0.66 1.35 16 18 C 0.05 0.82 4.91 -3.71 -0.02 0.80 16 19 C 0.17 3.52 3.66 -67.49 -0.25 3.28 16 20 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 21 C -0.13 -2.44 8.17 37.16 0.30 -2.14 16 22 N -0.58 -13.74 2.83 -157.27 -0.45 -14.19 16 23 C -0.26 -6.79 6.79 -15.06 -0.10 -6.89 16 24 H 0.05 1.33 7.14 -52.49 -0.37 0.95 16 25 C 0.04 0.98 3.22 -17.43 -0.06 0.92 16 26 N -0.87 -24.27 11.87 55.49 0.66 -23.61 16 27 Si 0.88 20.69 29.61 -169.99 -5.03 15.66 16 28 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 29 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 30 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 31 H 0.09 2.17 4.98 -51.93 -0.26 1.91 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.05 1.11 7.68 -51.93 -0.40 0.71 16 34 H 0.06 1.07 5.67 -51.93 -0.29 0.78 16 35 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.85 7.91 -51.93 -0.41 0.44 16 37 H 0.04 0.48 8.06 -51.93 -0.42 0.06 16 38 H 0.14 1.12 8.06 -52.48 -0.42 0.69 16 39 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 40 H 0.14 1.62 7.95 -52.48 -0.42 1.20 16 41 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.09 0.61 8.07 -51.92 -0.42 0.19 16 43 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.06 0.87 7.99 -51.93 -0.41 0.45 16 45 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.05 0.91 7.60 -51.93 -0.39 0.51 16 47 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 48 H 0.07 1.39 7.65 -51.93 -0.40 0.99 16 49 H 0.25 6.89 8.32 -40.82 -0.34 6.55 16 LS Contribution 386.59 15.07 5.83 5.83 Total: -1.00 -31.05 386.59 -10.02 -41.06 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -7.56 Total: -2.00 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: -1.39 Total: 5.63 kcal Atomic # 7 Polarization: -52.64 SS G_CDS: -1.28 Total: -53.92 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: -0.57 Total: -12.25 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.03 Total: 15.66 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.05 -10.02 -41.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331567718.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.073 kcal (2) G-P(sol) polarization free energy of solvation -31.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds