Wall clock time and date at job start Wed Apr 1 2020 03:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.78379 * 2 1 4 4 C 1.52789 * 109.55399 * 239.76620 * 2 1 3 5 5 N 1.46898 * 109.41936 * 186.61127 * 4 2 1 6 6 C 1.46894 * 111.00041 * 187.11714 * 5 4 2 7 7 C 1.50707 * 109.47191 * 65.69696 * 6 5 4 8 8 C 1.38407 * 119.84410 * 90.00529 * 7 6 5 9 9 C 1.38130 * 120.18759 * 179.97438 * 8 7 6 10 10 C 1.38612 * 119.82037 * 359.97438 * 9 8 7 11 11 C 1.39463 * 120.03470 * 0.02562 * 10 9 8 12 12 C 1.38117 * 119.84372 * 269.72537 * 7 6 5 13 13 O 1.35562 * 107.27491 * 179.97438 * 11 10 9 14 14 C 1.34224 * 109.17852 * 359.97438 * 13 11 10 15 15 O 1.21599 * 125.27325 * 179.97438 * 14 13 11 16 16 N 1.34781 * 109.45148 * 0.02562 * 14 13 11 17 17 C 1.46499 * 126.25569 * 179.97438 * 16 14 13 18 18 C 1.46894 * 111.26932 * 62.96477 * 5 4 2 19 19 C 1.53234 * 109.34330 * 296.89461 * 18 5 4 20 20 H 1.09002 * 109.79039 * 294.02444 * 19 18 5 21 21 C 1.53000 * 109.62889 * 173.53884 * 19 18 5 22 22 N 1.47077 * 108.52349 * 53.83069 * 19 18 5 23 23 C 1.36933 * 120.88616 * 128.81552 * 22 19 18 24 24 H 1.08001 * 119.99502 * 308.48582 * 23 22 19 25 25 C 1.38808 * 120.00343 * 128.48527 * 23 22 19 26 26 N 1.31619 * 119.99798 * 338.24545 * 25 23 22 27 27 Si 1.86793 * 120.00363 * 158.24557 * 25 23 22 28 28 H 1.48499 * 109.47396 * 179.97438 * 27 25 23 29 29 H 1.48498 * 109.47397 * 300.00251 * 27 25 23 30 30 H 1.48504 * 109.47027 * 60.00067 * 27 25 23 31 31 H 1.08997 * 109.47157 * 307.66292 * 1 2 3 32 32 H 1.09000 * 109.47503 * 67.66646 * 1 2 3 33 33 H 1.09003 * 109.47319 * 187.66482 * 1 2 3 34 34 H 1.08997 * 109.56307 * 66.55671 * 4 2 1 35 35 H 1.08998 * 109.36446 * 306.53969 * 4 2 1 36 36 H 1.08997 * 109.47588 * 185.69517 * 6 5 4 37 37 H 1.09003 * 109.47150 * 305.70273 * 6 5 4 38 38 H 1.08003 * 119.90652 * 359.97438 * 8 7 6 39 39 H 1.07997 * 120.08925 * 179.97438 * 9 8 7 40 40 H 1.08011 * 120.04347 * 0.02562 * 12 7 6 41 41 H 1.09003 * 109.47394 * 269.99973 * 17 16 14 42 42 H 1.09011 * 109.47239 * 29.99777 * 17 16 14 43 43 H 1.09004 * 109.47543 * 149.99664 * 17 16 14 44 44 H 1.09002 * 109.49105 * 176.93358 * 18 5 4 45 45 H 1.08998 * 109.49509 * 56.85719 * 18 5 4 46 46 H 1.09004 * 109.47199 * 300.97035 * 21 19 18 47 47 H 1.09005 * 109.47212 * 60.97157 * 21 19 18 48 48 H 1.09001 * 109.47144 * 180.97371 * 21 19 18 49 49 H 0.96996 * 120.00144 * 175.07008 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0256 0.0000 4 6 2.0414 -0.7250 -1.2439 5 7 3.5017 -0.8626 -1.1633 6 6 4.0494 -1.4025 -2.4148 7 6 3.8365 -0.4078 -3.5268 8 6 4.8006 0.5504 -3.7877 9 6 4.6130 1.4652 -4.8055 10 6 3.4555 1.4215 -5.5669 11 6 2.4835 0.4564 -5.3047 12 6 2.6829 -0.4603 -4.2844 13 8 1.4757 0.6490 -6.1907 14 6 1.7799 1.6868 -6.9858 15 8 1.0795 2.1118 -7.8844 16 7 2.9823 2.1840 -6.6344 17 6 3.6672 3.3181 -7.2598 18 6 3.8963 -1.6901 -0.0156 19 6 3.4619 -0.9994 1.2814 20 1 4.0199 -0.0720 1.4105 21 6 3.7240 -1.9264 2.4701 22 7 2.0240 -0.7028 1.1939 23 6 1.1671 -1.0760 2.1946 24 1 1.1626 -2.0962 2.5490 25 6 0.3044 -0.1433 2.7536 26 7 0.5736 1.1416 2.6591 27 14 -1.2386 -0.7115 3.6398 28 1 -1.9842 0.4702 4.1427 29 1 -2.0969 -1.4754 2.6992 30 1 -0.8611 -1.5810 4.7829 31 1 -0.3633 0.6279 0.8135 32 1 -0.3634 0.3905 -0.9506 33 1 -0.3634 -1.0185 0.1371 34 1 1.7785 -0.1529 -2.1337 35 1 1.5854 -1.7134 -1.2992 36 1 5.1165 -1.5891 -2.2938 37 1 3.5428 -2.3358 -2.6604 38 1 5.7021 0.5829 -3.1939 39 1 5.3661 2.2124 -5.0075 40 1 1.9352 -1.2124 -4.0796 41 1 4.2949 2.9587 -8.0753 42 1 2.9286 4.0178 -7.6512 43 1 4.2876 3.8217 -6.5185 44 1 4.9788 -1.8181 -0.0146 45 1 3.4145 -2.6652 -0.0874 46 1 3.1703 -2.8556 2.3352 47 1 4.7901 -2.1446 2.5326 48 1 3.3982 -1.4396 3.3893 49 1 -0.0634 1.7960 2.9860 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331567718.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:18 Heat of formation + Delta-G solvation = 7.262270 kcal Electronic energy + Delta-G solvation = -31187.887904 eV Core-core repulsion = 27116.667518 eV Total energy + Delta-G solvation = -4071.220386 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -44.36009 -40.49879 -39.54163 -38.66967 -37.32484 -36.17917 -34.44943 -33.32772 -31.87226 -31.31847 -29.51036 -28.99415 -27.48663 -27.30405 -25.99199 -24.59283 -23.64095 -22.82858 -22.26907 -21.88239 -20.79801 -19.35058 -18.73539 -18.65781 -18.08772 -17.49357 -17.01876 -16.33486 -16.25554 -16.10483 -16.01348 -15.94198 -15.22799 -15.17818 -15.05085 -14.94817 -14.68021 -14.42242 -14.39408 -13.62708 -13.47675 -13.36374 -13.28818 -13.10418 -13.04345 -12.94880 -12.62609 -12.54533 -12.35808 -12.32790 -12.28030 -12.17948 -11.98544 -11.85322 -11.59431 -11.49689 -11.40285 -11.12774 -10.08478 -9.80542 -9.25678 -9.05777 -8.36015 -7.64931 -5.52294 0.00879 0.11904 1.00014 1.23757 1.44232 1.48165 1.52624 1.74499 2.46086 2.51724 3.23696 3.26549 3.28726 3.53350 3.64433 3.79125 4.01019 4.08392 4.24574 4.32758 4.36414 4.40765 4.44627 4.49222 4.60597 4.67634 4.69409 4.73126 4.74784 4.76417 4.83614 4.91498 4.95679 4.96351 4.99682 5.01251 5.04996 5.17364 5.22997 5.29491 5.51477 5.54517 5.57142 5.61318 5.72537 5.77798 5.83276 6.07153 6.26288 6.34335 6.43557 6.59958 7.28846 7.88681 8.60406 9.17115 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014939 B = 0.002924 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.837122 B = 9572.744161 C =10701.168845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.199 3.801 3 H -0.002 1.002 4 C 0.057 3.943 5 N -0.536 5.536 6 C 0.096 3.904 7 C -0.061 4.061 8 C -0.067 4.067 9 C -0.087 4.087 10 C 0.058 3.942 11 C 0.003 3.997 12 C -0.080 4.080 13 O -0.257 6.257 14 C 0.623 3.377 15 O -0.530 6.530 16 N -0.540 5.540 17 C 0.090 3.910 18 C 0.061 3.939 19 C 0.162 3.838 20 H 0.009 0.991 21 C -0.120 4.120 22 N -0.595 5.595 23 C -0.260 4.260 24 H 0.046 0.954 25 C -0.002 4.002 26 N -0.905 5.905 27 Si 0.928 3.072 28 H -0.295 1.295 29 H -0.277 1.277 30 H -0.274 1.274 31 H 0.058 0.942 32 H 0.042 0.958 33 H 0.040 0.960 34 H 0.072 0.928 35 H 0.021 0.979 36 H 0.116 0.884 37 H 0.046 0.954 38 H 0.170 0.830 39 H 0.172 0.828 40 H 0.135 0.865 41 H 0.092 0.908 42 H 0.086 0.914 43 H 0.117 0.883 44 H 0.099 0.901 45 H 0.025 0.975 46 H 0.045 0.955 47 H 0.074 0.926 48 H 0.034 0.966 49 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.667 -1.087 -16.174 21.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.093 3.907 3 H 0.015 0.985 4 C -0.072 4.072 5 N -0.260 5.260 6 C -0.031 4.031 7 C -0.062 4.062 8 C -0.086 4.086 9 C -0.108 4.108 10 C -0.039 4.039 11 C -0.042 4.042 12 C -0.099 4.099 13 O -0.162 6.162 14 C 0.379 3.621 15 O -0.417 6.417 16 N -0.272 5.272 17 C -0.048 4.048 18 C -0.067 4.067 19 C 0.057 3.943 20 H 0.027 0.973 21 C -0.178 4.178 22 N -0.321 5.321 23 C -0.390 4.390 24 H 0.063 0.937 25 C -0.201 4.201 26 N -0.547 5.547 27 Si 0.755 3.245 28 H -0.221 1.221 29 H -0.203 1.203 30 H -0.200 1.200 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.090 0.910 35 H 0.040 0.960 36 H 0.134 0.866 37 H 0.064 0.936 38 H 0.187 0.813 39 H 0.190 0.810 40 H 0.153 0.847 41 H 0.111 0.889 42 H 0.105 0.895 43 H 0.136 0.864 44 H 0.117 0.883 45 H 0.044 0.956 46 H 0.064 0.936 47 H 0.093 0.907 48 H 0.053 0.947 49 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 14.245 -0.300 -16.550 21.838 hybrid contribution -2.145 -0.547 0.392 2.248 sum 12.100 -0.847 -16.159 20.204 Atomic orbital electron populations 1.21860 0.96447 1.01034 1.00057 1.20073 0.92410 0.92582 0.85651 0.98471 1.22493 0.87778 0.98481 0.98456 1.61877 1.10491 1.50819 1.02809 1.21134 1.02342 0.93334 0.86290 1.19631 0.92965 0.98194 0.95453 1.21268 0.99962 0.91989 0.95397 1.20460 0.94440 1.01335 0.94520 1.18801 0.97938 0.94014 0.93149 1.19205 0.87298 1.01407 0.96331 1.20043 0.99068 0.98126 0.92709 1.84914 1.42592 1.46738 1.41969 1.18706 0.82166 0.79155 0.82113 1.91091 1.56074 1.63338 1.31239 1.45840 1.17940 1.32072 1.31301 1.22199 0.97969 0.84855 0.99769 1.22520 1.00570 0.93507 0.90148 1.20732 0.85271 0.94871 0.93470 0.97311 1.21595 1.00376 0.98479 0.97361 1.44317 1.02150 1.68089 1.17510 1.18742 1.15846 0.91866 1.12563 0.93694 1.25933 1.02390 0.95145 0.96624 1.70294 1.34313 1.00859 1.49195 0.86010 0.81861 0.77339 0.79277 1.22130 1.20266 1.19968 0.92348 0.93897 0.94087 0.90959 0.96029 0.86610 0.93626 0.81301 0.81046 0.84732 0.88945 0.89517 0.86449 0.88321 0.95630 0.93608 0.90732 0.94719 0.94226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.26 7.93 71.98 0.57 -5.69 16 2 C 0.20 9.05 3.16 44.81 0.14 9.19 16 3 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 4 C 0.06 2.03 4.60 86.23 0.40 2.43 16 5 N -0.54 -15.78 4.62 -900.78 -4.16 -19.95 16 6 C 0.10 1.94 5.12 85.56 0.44 2.38 16 7 C -0.06 -1.20 4.88 -19.85 -0.10 -1.30 16 8 C -0.07 -1.01 9.69 22.28 0.22 -0.79 16 9 C -0.09 -1.23 10.04 22.33 0.22 -1.01 16 10 C 0.06 1.20 6.84 38.31 0.26 1.46 16 11 C 0.00 0.08 7.35 22.65 0.17 0.25 16 12 C -0.08 -1.86 7.87 22.33 0.18 -1.68 16 13 O -0.26 -7.79 10.72 8.55 0.09 -7.70 16 14 C 0.62 18.21 9.07 129.79 1.18 19.39 16 15 O -0.53 -18.26 17.81 19.19 0.34 -17.92 16 16 N -0.54 -11.33 3.21 -784.49 -2.52 -13.85 16 17 C 0.09 1.00 11.06 127.77 1.41 2.42 16 18 C 0.06 1.86 4.91 86.38 0.42 2.28 16 19 C 0.16 6.48 3.66 44.96 0.16 6.64 16 20 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 21 C -0.12 -4.35 8.17 71.98 0.59 -3.77 16 22 N -0.60 -28.53 2.83 -651.49 -1.85 -30.37 16 23 C -0.26 -13.61 6.79 84.03 0.57 -13.04 16 24 H 0.05 2.39 7.14 -2.91 -0.02 2.37 16 25 C 0.00 -0.09 3.22 84.86 0.27 0.18 16 26 N -0.90 -52.11 11.87 21.65 0.26 -51.85 16 27 Si 0.93 43.34 29.61 68.60 2.03 45.37 16 28 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 29 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 30 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 31 H 0.06 3.04 4.98 -2.39 -0.01 3.02 16 32 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.04 1.90 7.68 -2.39 -0.02 1.88 16 34 H 0.07 2.41 5.67 -2.39 -0.01 2.40 16 35 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.12 1.68 7.91 -2.39 -0.02 1.66 16 37 H 0.05 0.92 8.06 -2.39 -0.02 0.90 16 38 H 0.17 1.66 8.06 -2.91 -0.02 1.63 16 39 H 0.17 1.12 8.06 -2.91 -0.02 1.10 16 40 H 0.13 3.10 7.95 -2.91 -0.02 3.08 16 41 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.09 1.06 8.07 -2.38 -0.02 1.04 16 43 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.10 2.29 7.99 -2.39 -0.02 2.27 16 45 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.04 1.66 7.60 -2.39 -0.02 1.64 16 47 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 48 H 0.03 1.44 7.65 -2.39 -0.02 1.43 16 49 H 0.25 14.00 8.32 -92.71 -0.77 13.23 16 Total: -1.00 -71.68 386.59 2.25 -69.43 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: 0.95 Total: 7.50 kcal Atomic # 6 Polarization: 12.23 SS G_CDS: 7.11 Total: 19.33 kcal Atomic # 7 Polarization: -107.75 SS G_CDS: -8.27 Total: -116.02 kcal Atomic # 8 Polarization: -26.05 SS G_CDS: 0.43 Total: -25.61 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -71.68 2.25 -69.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331567718.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.693 kcal (2) G-P(sol) polarization free energy of solvation -71.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds