Wall clock time and date at job start Wed Apr 1 2020 03:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09009 * 109.78503 * 2 1 4 4 C 1.53240 * 109.62868 * 120.48618 * 2 1 3 5 5 N 1.46896 * 109.33512 * 65.88281 * 4 2 1 6 6 C 1.46898 * 110.99746 * 187.25162 * 5 4 2 7 7 C 1.50703 * 109.47313 * 169.99760 * 6 5 4 8 8 C 1.38414 * 119.84413 * 269.72622 * 7 6 5 9 9 C 1.38123 * 120.18525 * 179.77578 * 8 7 6 10 10 C 1.38613 * 119.82662 * 0.44315 * 9 8 7 11 11 C 1.39466 * 120.02928 * 359.83047 * 10 9 8 12 12 C 1.38116 * 119.84470 * 90.00002 * 7 6 5 13 13 O 1.35560 * 107.27609 * 179.97438 * 11 10 9 14 14 C 1.34235 * 109.17624 * 0.02562 * 13 11 10 15 15 O 1.21601 * 125.26955 * 180.02562 * 14 13 11 16 16 N 1.34775 * 109.44856 * 359.97438 * 14 13 11 17 17 C 1.46502 * 126.24979 * 179.97438 * 16 14 13 18 18 C 1.46894 * 111.27510 * 63.10350 * 5 4 2 19 19 C 1.53244 * 109.33933 * 296.89573 * 18 5 4 20 20 H 1.09000 * 109.62330 * 294.11448 * 19 18 5 21 21 C 1.52998 * 109.78818 * 173.63252 * 19 18 5 22 22 N 1.47073 * 108.52276 * 53.82709 * 19 18 5 23 23 C 1.36930 * 120.88512 * 128.83743 * 22 19 18 24 24 H 1.08004 * 120.00199 * 331.85571 * 23 22 19 25 25 C 1.38815 * 120.00236 * 151.85065 * 23 22 19 26 26 N 1.31607 * 120.00045 * 342.77991 * 25 23 22 27 27 Si 1.86803 * 119.99727 * 162.77572 * 25 23 22 28 28 H 1.48493 * 109.47209 * 60.00295 * 27 25 23 29 29 H 1.48503 * 109.46842 * 180.02562 * 27 25 23 30 30 H 1.48499 * 109.47443 * 300.00183 * 27 25 23 31 31 H 1.09007 * 109.46992 * 299.51222 * 1 2 3 32 32 H 1.09003 * 109.46986 * 59.50817 * 1 2 3 33 33 H 1.08991 * 109.47226 * 179.51269 * 1 2 3 34 34 H 1.08991 * 109.49323 * 305.91784 * 4 2 1 35 35 H 1.09003 * 109.51055 * 185.84999 * 4 2 1 36 36 H 1.09005 * 109.47417 * 49.99668 * 6 5 4 37 37 H 1.08998 * 109.47412 * 289.99601 * 6 5 4 38 38 H 1.08002 * 119.90512 * 0.02562 * 8 7 6 39 39 H 1.08001 * 120.09280 * 180.25730 * 9 8 7 40 40 H 1.07999 * 120.04122 * 359.97438 * 12 7 6 41 41 H 1.09001 * 109.47145 * 0.02562 * 17 16 14 42 42 H 1.08997 * 109.47491 * 120.03068 * 17 16 14 43 43 H 1.09009 * 109.46770 * 240.02795 * 17 16 14 44 44 H 1.09006 * 109.49350 * 56.84917 * 18 5 4 45 45 H 1.09001 * 109.49856 * 176.93484 * 18 5 4 46 46 H 1.08995 * 109.47048 * 296.62300 * 21 19 18 47 47 H 1.09005 * 109.47194 * 56.62413 * 21 19 18 48 48 H 1.08998 * 109.47025 * 176.62178 * 21 19 18 49 49 H 0.97001 * 120.00408 * 175.08918 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8990 1.0257 0.0000 4 6 2.0448 -0.7323 1.2438 5 7 1.6747 -2.1514 1.1607 6 6 1.9978 -2.8537 2.4098 7 6 1.3883 -4.2317 2.3836 8 6 0.1112 -4.4295 2.8792 9 6 -0.4560 -5.6887 2.8543 10 6 0.2607 -6.7577 2.3397 11 6 1.5498 -6.5604 1.8454 12 6 2.1089 -5.2923 1.8703 13 8 2.0036 -7.7625 1.4133 14 6 1.0558 -8.6909 1.6173 15 8 1.1559 -9.8699 1.3369 16 7 -0.0234 -8.1139 2.1819 17 6 -1.2679 -8.7881 2.5600 18 6 2.3147 -2.8026 0.0100 19 6 1.8110 -2.1551 -1.2844 20 1 0.7480 -2.3624 -1.4078 21 6 2.5858 -2.7148 -2.4791 22 7 2.0240 -0.7027 -1.1939 23 6 2.6650 -0.0227 -2.1948 24 1 3.3962 -0.5277 -2.8085 25 6 2.3748 1.3159 -2.4207 26 7 1.2744 1.8430 -1.9275 27 14 3.5465 2.3690 -3.4246 28 1 3.6822 1.7963 -4.7879 29 1 3.0123 3.7514 -3.5188 30 1 4.8765 2.3966 -2.7646 31 1 -0.3633 0.5063 0.8944 32 1 -0.3633 0.5215 -0.8856 33 1 -0.3633 -1.0275 -0.0087 34 1 1.5992 -0.2917 2.1356 35 1 3.1297 -0.6418 1.2966 36 1 1.5963 -2.2949 3.2552 37 1 3.0800 -2.9370 2.5104 38 1 -0.4449 -3.5962 3.2827 39 1 -1.4543 -5.8406 3.2376 40 1 3.1066 -5.1338 1.4884 41 1 -1.1961 -9.8477 2.3147 42 1 -1.4323 -8.6734 3.6314 43 1 -2.1014 -8.3446 2.0150 44 1 3.3959 -2.6833 0.0795 45 1 2.0649 -3.8636 0.0071 46 1 3.6383 -2.4469 -2.3873 47 1 2.4876 -3.8002 -2.4996 48 1 2.1834 -2.2961 -3.4015 49 1 1.1063 2.7935 -2.0241 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331567720.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:28 Heat of formation + Delta-G solvation = 26.393053 kcal Electronic energy + Delta-G solvation = -31224.052723 eV Core-core repulsion = 27153.661910 eV Total energy + Delta-G solvation = -4070.390813 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -43.44217 -39.41378 -38.31067 -37.62852 -36.32615 -34.64926 -32.55199 -31.76298 -30.80256 -30.20235 -28.48037 -27.73045 -26.31864 -25.69651 -24.01280 -23.71885 -22.59924 -22.02497 -21.28726 -20.67423 -18.61465 -18.46943 -17.84191 -17.69783 -16.54507 -16.27467 -15.46632 -15.31829 -15.11111 -14.78029 -14.51487 -14.50028 -14.33538 -14.04997 -13.87325 -13.57105 -13.46920 -13.13491 -12.94397 -12.86523 -12.30026 -12.13462 -12.09491 -11.79432 -11.57328 -11.44590 -11.23160 -11.07813 -10.92025 -10.89519 -10.72934 -10.56443 -10.51829 -10.41070 -10.02830 -9.91393 -9.47545 -9.21238 -9.00104 -8.45530 -8.28913 -7.81400 -6.61695 -5.72453 -3.17990 0.84152 0.94437 1.83715 2.23140 2.61025 3.29682 3.39577 3.45853 3.47015 4.08385 4.26251 4.43970 4.53127 4.64399 4.73109 4.82376 4.92890 5.06399 5.08547 5.13965 5.30795 5.39024 5.42254 5.51440 5.61302 5.72250 5.81786 5.91464 5.94575 6.01222 6.09914 6.14242 6.21255 6.30858 6.33300 6.35275 6.38985 6.43679 6.62871 6.84375 6.96053 6.97973 7.04067 7.09099 7.24903 7.38953 7.49005 7.54172 7.73478 7.84563 7.98112 8.47912 9.26596 9.88407 10.47112 11.32444 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.020378 B = 0.002660 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.719874 B =10523.962293 C =11157.028178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.200 3.800 3 H 0.091 0.909 4 C 0.042 3.958 5 N -0.523 5.523 6 C 0.090 3.910 7 C -0.051 4.051 8 C -0.074 4.074 9 C -0.100 4.100 10 C 0.061 3.939 11 C 0.034 3.966 12 C -0.072 4.072 13 O -0.236 6.236 14 C 0.634 3.366 15 O -0.495 6.495 16 N -0.550 5.550 17 C 0.099 3.901 18 C 0.044 3.956 19 C 0.173 3.827 20 H 0.032 0.968 21 C -0.138 4.138 22 N -0.584 5.584 23 C -0.248 4.248 24 H 0.069 0.931 25 C 0.003 3.997 26 N -0.896 5.896 27 Si 0.895 3.105 28 H -0.284 1.284 29 H -0.292 1.292 30 H -0.286 1.286 31 H 0.019 0.981 32 H 0.074 0.926 33 H 0.033 0.967 34 H 0.061 0.939 35 H 0.025 0.975 36 H 0.085 0.915 37 H 0.041 0.959 38 H 0.142 0.858 39 H 0.134 0.866 40 H 0.139 0.861 41 H 0.095 0.905 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.028 0.972 45 H 0.063 0.937 46 H 0.053 0.947 47 H 0.038 0.962 48 H 0.061 0.939 49 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.507 -14.120 13.505 20.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.093 3.907 3 H 0.109 0.891 4 C -0.087 4.087 5 N -0.247 5.247 6 C -0.037 4.037 7 C -0.053 4.053 8 C -0.094 4.094 9 C -0.121 4.121 10 C -0.036 4.036 11 C -0.013 4.013 12 C -0.091 4.091 13 O -0.141 6.141 14 C 0.390 3.610 15 O -0.379 6.379 16 N -0.282 5.282 17 C -0.041 4.041 18 C -0.085 4.085 19 C 0.066 3.934 20 H 0.050 0.950 21 C -0.196 4.196 22 N -0.307 5.307 23 C -0.378 4.378 24 H 0.087 0.913 25 C -0.195 4.195 26 N -0.541 5.541 27 Si 0.725 3.275 28 H -0.210 1.210 29 H -0.218 1.218 30 H -0.213 1.213 31 H 0.038 0.962 32 H 0.093 0.907 33 H 0.053 0.947 34 H 0.080 0.920 35 H 0.043 0.957 36 H 0.103 0.897 37 H 0.059 0.941 38 H 0.160 0.840 39 H 0.152 0.848 40 H 0.157 0.843 41 H 0.114 0.886 42 H 0.096 0.904 43 H 0.097 0.903 44 H 0.046 0.954 45 H 0.081 0.919 46 H 0.072 0.928 47 H 0.057 0.943 48 H 0.080 0.920 49 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -4.862 -14.772 13.077 20.319 hybrid contribution 1.320 0.506 -0.381 1.464 sum -3.542 -14.265 12.696 19.423 Atomic orbital electron populations 1.21969 0.97855 0.99256 1.00449 1.20350 0.92678 0.95505 0.82168 0.89145 1.22891 0.97669 0.87076 1.01061 1.61985 1.58985 1.02746 1.00990 1.21071 0.97665 0.90203 0.94783 1.19609 0.94218 0.94443 0.97009 1.20921 0.94335 0.95866 0.98245 1.20052 1.00020 0.90048 1.01935 1.18507 0.95522 0.85086 1.04494 1.18897 0.92689 0.86305 1.03366 1.19953 1.01356 0.86911 1.00925 1.84992 1.40372 1.16713 1.72057 1.18527 0.78566 0.85018 0.78909 1.91140 1.79590 1.09810 1.57371 1.45646 1.16908 1.07144 1.58527 1.21813 0.82159 0.98732 1.01408 1.22773 0.95928 0.97535 0.92264 1.20441 0.96433 0.85808 0.90747 0.95040 1.21798 1.00720 0.97857 0.99204 1.44263 1.66980 1.01103 1.18403 1.19157 1.14613 0.93578 1.10402 0.91341 1.24978 0.96105 0.99048 0.99388 1.70041 1.22552 1.11614 1.49867 0.86496 0.80885 0.79855 0.80272 1.21049 1.21770 1.21321 0.96162 0.90679 0.94746 0.92013 0.95664 0.89675 0.94132 0.84034 0.84833 0.84344 0.88582 0.90396 0.90277 0.95384 0.91865 0.92776 0.94318 0.92030 0.93846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 8.98 37.16 0.33 -2.61 16 2 C 0.20 4.40 2.35 -67.49 -0.16 4.25 16 3 H 0.09 2.28 6.25 -51.92 -0.32 1.96 16 4 C 0.04 0.74 5.01 -3.70 -0.02 0.72 16 5 N -0.52 -8.25 4.12 -235.76 -0.97 -9.22 16 6 C 0.09 1.08 5.12 -4.98 -0.03 1.06 16 7 C -0.05 -0.56 4.89 -104.60 -0.51 -1.07 16 8 C -0.07 -0.70 9.69 -39.56 -0.38 -1.09 16 9 C -0.10 -0.88 10.03 -39.48 -0.40 -1.27 16 10 C 0.06 0.66 6.84 -83.79 -0.57 0.09 16 11 C 0.03 0.42 7.35 -38.99 -0.29 0.13 16 12 C -0.07 -0.83 7.86 -39.49 -0.31 -1.14 16 13 O -0.24 -3.31 10.72 -22.01 -0.24 -3.54 16 14 C 0.63 8.71 9.07 54.05 0.49 9.20 16 15 O -0.50 -7.91 17.57 -19.01 -0.33 -8.25 16 16 N -0.55 -5.84 3.21 -126.43 -0.41 -6.25 16 17 C 0.10 0.63 11.21 59.85 0.67 1.30 16 18 C 0.04 0.75 4.63 -3.70 -0.02 0.73 16 19 C 0.17 3.50 3.24 -67.49 -0.22 3.28 16 20 H 0.03 0.70 7.60 -51.93 -0.39 0.30 16 21 C -0.14 -2.58 7.96 37.16 0.30 -2.28 16 22 N -0.58 -13.73 2.72 -157.00 -0.43 -14.16 16 23 C -0.25 -6.43 8.71 -15.06 -0.13 -6.57 16 24 H 0.07 1.76 6.17 -52.48 -0.32 1.43 16 25 C 0.00 0.09 4.91 -17.43 -0.09 0.00 16 26 N -0.90 -24.57 9.81 55.49 0.54 -24.02 16 27 Si 0.89 21.14 29.59 -169.99 -5.03 16.11 16 28 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 29 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 30 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 31 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 1.88 6.77 -51.93 -0.35 1.52 16 33 H 0.03 0.72 7.06 -51.93 -0.37 0.35 16 34 H 0.06 0.98 7.99 -51.93 -0.41 0.56 16 35 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.08 0.89 7.91 -51.93 -0.41 0.48 16 37 H 0.04 0.48 8.06 -51.93 -0.42 0.06 16 38 H 0.14 1.12 8.06 -52.49 -0.42 0.69 16 39 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 40 H 0.14 1.51 7.92 -52.49 -0.42 1.09 16 41 H 0.10 0.61 7.72 -51.93 -0.40 0.21 16 42 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.08 0.38 8.14 -51.92 -0.42 -0.04 16 44 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.06 0.98 5.65 -51.93 -0.29 0.68 16 46 H 0.05 1.03 7.32 -51.93 -0.38 0.65 16 47 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.06 1.23 7.79 -51.93 -0.40 0.83 16 49 H 0.25 6.78 8.32 -40.82 -0.34 6.44 16 LS Contribution 384.44 15.07 5.79 5.79 Total: -1.00 -30.47 384.44 -9.81 -40.28 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -7.42 Total: -1.47 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: -1.33 Total: 4.73 kcal Atomic # 7 Polarization: -52.39 SS G_CDS: -1.26 Total: -53.65 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: -0.57 Total: -11.79 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.03 Total: 16.11 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.47 -9.81 -40.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331567720.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.675 kcal (2) G-P(sol) polarization free energy of solvation -30.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds