Wall clock time and date at job start Wed Apr 1 2020 03:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09009 * 109.78503 * 2 1 4 4 C 1.53240 * 109.62868 * 120.48618 * 2 1 3 5 5 N 1.46896 * 109.33512 * 65.88281 * 4 2 1 6 6 C 1.46898 * 110.99746 * 187.25162 * 5 4 2 7 7 C 1.50703 * 109.47313 * 169.99760 * 6 5 4 8 8 C 1.38414 * 119.84413 * 269.72622 * 7 6 5 9 9 C 1.38123 * 120.18525 * 179.77578 * 8 7 6 10 10 C 1.38613 * 119.82662 * 0.44315 * 9 8 7 11 11 C 1.39466 * 120.02928 * 359.83047 * 10 9 8 12 12 C 1.38116 * 119.84470 * 90.00002 * 7 6 5 13 13 O 1.35560 * 107.27609 * 179.97438 * 11 10 9 14 14 C 1.34235 * 109.17624 * 0.02562 * 13 11 10 15 15 O 1.21601 * 125.26955 * 180.02562 * 14 13 11 16 16 N 1.34775 * 109.44856 * 359.97438 * 14 13 11 17 17 C 1.46502 * 126.24979 * 179.97438 * 16 14 13 18 18 C 1.46894 * 111.27510 * 63.10350 * 5 4 2 19 19 C 1.53244 * 109.33933 * 296.89573 * 18 5 4 20 20 H 1.09000 * 109.62330 * 294.11448 * 19 18 5 21 21 C 1.52998 * 109.78818 * 173.63252 * 19 18 5 22 22 N 1.47073 * 108.52276 * 53.82709 * 19 18 5 23 23 C 1.36930 * 120.88512 * 128.83743 * 22 19 18 24 24 H 1.08004 * 120.00199 * 331.85571 * 23 22 19 25 25 C 1.38815 * 120.00236 * 151.85065 * 23 22 19 26 26 N 1.31607 * 120.00045 * 342.77991 * 25 23 22 27 27 Si 1.86803 * 119.99727 * 162.77572 * 25 23 22 28 28 H 1.48493 * 109.47209 * 60.00295 * 27 25 23 29 29 H 1.48503 * 109.46842 * 180.02562 * 27 25 23 30 30 H 1.48499 * 109.47443 * 300.00183 * 27 25 23 31 31 H 1.09007 * 109.46992 * 299.51222 * 1 2 3 32 32 H 1.09003 * 109.46986 * 59.50817 * 1 2 3 33 33 H 1.08991 * 109.47226 * 179.51269 * 1 2 3 34 34 H 1.08991 * 109.49323 * 305.91784 * 4 2 1 35 35 H 1.09003 * 109.51055 * 185.84999 * 4 2 1 36 36 H 1.09005 * 109.47417 * 49.99668 * 6 5 4 37 37 H 1.08998 * 109.47412 * 289.99601 * 6 5 4 38 38 H 1.08002 * 119.90512 * 0.02562 * 8 7 6 39 39 H 1.08001 * 120.09280 * 180.25730 * 9 8 7 40 40 H 1.07999 * 120.04122 * 359.97438 * 12 7 6 41 41 H 1.09001 * 109.47145 * 0.02562 * 17 16 14 42 42 H 1.08997 * 109.47491 * 120.03068 * 17 16 14 43 43 H 1.09009 * 109.46770 * 240.02795 * 17 16 14 44 44 H 1.09006 * 109.49350 * 56.84917 * 18 5 4 45 45 H 1.09001 * 109.49856 * 176.93484 * 18 5 4 46 46 H 1.08995 * 109.47048 * 296.62300 * 21 19 18 47 47 H 1.09005 * 109.47194 * 56.62413 * 21 19 18 48 48 H 1.08998 * 109.47025 * 176.62178 * 21 19 18 49 49 H 0.97001 * 120.00408 * 175.08918 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8990 1.0257 0.0000 4 6 2.0448 -0.7323 1.2438 5 7 1.6747 -2.1514 1.1607 6 6 1.9978 -2.8537 2.4098 7 6 1.3883 -4.2317 2.3836 8 6 0.1112 -4.4295 2.8792 9 6 -0.4560 -5.6887 2.8543 10 6 0.2607 -6.7577 2.3397 11 6 1.5498 -6.5604 1.8454 12 6 2.1089 -5.2923 1.8703 13 8 2.0036 -7.7625 1.4133 14 6 1.0558 -8.6909 1.6173 15 8 1.1559 -9.8699 1.3369 16 7 -0.0234 -8.1139 2.1819 17 6 -1.2679 -8.7881 2.5600 18 6 2.3147 -2.8026 0.0100 19 6 1.8110 -2.1551 -1.2844 20 1 0.7480 -2.3624 -1.4078 21 6 2.5858 -2.7148 -2.4791 22 7 2.0240 -0.7027 -1.1939 23 6 2.6650 -0.0227 -2.1948 24 1 3.3962 -0.5277 -2.8085 25 6 2.3748 1.3159 -2.4207 26 7 1.2744 1.8430 -1.9275 27 14 3.5465 2.3690 -3.4246 28 1 3.6822 1.7963 -4.7879 29 1 3.0123 3.7514 -3.5188 30 1 4.8765 2.3966 -2.7646 31 1 -0.3633 0.5063 0.8944 32 1 -0.3633 0.5215 -0.8856 33 1 -0.3633 -1.0275 -0.0087 34 1 1.5992 -0.2917 2.1356 35 1 3.1297 -0.6418 1.2966 36 1 1.5963 -2.2949 3.2552 37 1 3.0800 -2.9370 2.5104 38 1 -0.4449 -3.5962 3.2827 39 1 -1.4543 -5.8406 3.2376 40 1 3.1066 -5.1338 1.4884 41 1 -1.1961 -9.8477 2.3147 42 1 -1.4323 -8.6734 3.6314 43 1 -2.1014 -8.3446 2.0150 44 1 3.3959 -2.6833 0.0795 45 1 2.0649 -3.8636 0.0071 46 1 3.6383 -2.4469 -2.3873 47 1 2.4876 -3.8002 -2.4996 48 1 2.1834 -2.2961 -3.4015 49 1 1.1063 2.7935 -2.0241 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331567720.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:27 Heat of formation + Delta-G solvation = 9.026665 kcal Electronic energy + Delta-G solvation = -31224.805786 eV Core-core repulsion = 27153.661910 eV Total energy + Delta-G solvation = -4071.143876 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -44.34272 -40.52096 -39.54801 -38.65375 -37.28328 -36.03663 -34.21096 -33.32216 -31.73800 -31.26601 -29.65495 -28.99959 -27.70204 -26.95946 -25.75601 -24.60758 -23.87132 -22.82642 -22.40691 -22.21011 -20.29757 -19.35257 -18.71143 -18.63590 -17.98996 -17.49244 -17.05214 -16.31046 -16.27740 -16.06399 -15.73177 -15.65480 -15.30629 -15.15031 -15.03472 -15.00077 -14.68195 -14.39339 -14.27414 -13.62644 -13.44514 -13.39451 -13.20414 -13.07177 -13.01588 -12.79916 -12.72744 -12.44928 -12.32553 -12.29039 -12.18426 -12.15569 -11.98958 -11.83745 -11.57815 -11.52061 -11.17776 -10.91546 -10.40204 -9.79234 -9.23087 -9.04621 -8.49657 -7.71619 -5.18540 0.02453 0.13300 1.01546 1.25659 1.49442 1.51243 1.56723 1.75944 2.47771 2.58116 3.24557 3.30469 3.39614 3.55267 3.67219 3.80023 4.02241 4.09485 4.25996 4.29524 4.40304 4.43895 4.47610 4.51898 4.61825 4.64863 4.69709 4.71492 4.76676 4.81699 4.84405 4.87959 4.92177 4.97979 5.07371 5.14748 5.19202 5.24717 5.32070 5.39677 5.43918 5.53151 5.56200 5.60275 5.75382 5.84577 6.08433 6.10805 6.28445 6.35945 6.45373 6.53329 7.30329 8.00509 8.53455 9.29684 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.020378 B = 0.002660 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.719874 B =10523.962293 C =11157.028178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.195 3.805 3 H 0.053 0.947 4 C 0.056 3.944 5 N -0.526 5.526 6 C 0.094 3.906 7 C -0.058 4.058 8 C -0.068 4.068 9 C -0.086 4.086 10 C 0.059 3.941 11 C 0.006 3.994 12 C -0.078 4.078 13 O -0.255 6.255 14 C 0.624 3.376 15 O -0.531 6.531 16 N -0.540 5.540 17 C 0.088 3.912 18 C 0.059 3.941 19 C 0.166 3.834 20 H 0.015 0.985 21 C -0.130 4.130 22 N -0.600 5.600 23 C -0.251 4.251 24 H 0.066 0.934 25 C -0.045 4.045 26 N -0.918 5.918 27 Si 0.950 3.050 28 H -0.283 1.283 29 H -0.297 1.297 30 H -0.284 1.284 31 H 0.040 0.960 32 H 0.034 0.966 33 H 0.038 0.962 34 H 0.088 0.912 35 H 0.015 0.985 36 H 0.109 0.891 37 H 0.044 0.956 38 H 0.166 0.834 39 H 0.170 0.830 40 H 0.137 0.863 41 H 0.091 0.909 42 H 0.105 0.895 43 H 0.100 0.900 44 H 0.021 0.979 45 H 0.081 0.919 46 H 0.047 0.953 47 H 0.068 0.932 48 H 0.040 0.960 49 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.622 -14.810 15.717 22.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.089 3.911 3 H 0.071 0.929 4 C -0.073 4.073 5 N -0.250 5.250 6 C -0.033 4.033 7 C -0.060 4.060 8 C -0.087 4.087 9 C -0.106 4.106 10 C -0.039 4.039 11 C -0.040 4.040 12 C -0.097 4.097 13 O -0.161 6.161 14 C 0.380 3.620 15 O -0.418 6.418 16 N -0.272 5.272 17 C -0.050 4.050 18 C -0.071 4.071 19 C 0.060 3.940 20 H 0.033 0.967 21 C -0.188 4.188 22 N -0.324 5.324 23 C -0.381 4.381 24 H 0.084 0.916 25 C -0.241 4.241 26 N -0.564 5.564 27 Si 0.779 3.221 28 H -0.209 1.209 29 H -0.224 1.224 30 H -0.211 1.211 31 H 0.059 0.941 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.106 0.894 35 H 0.034 0.966 36 H 0.128 0.872 37 H 0.063 0.937 38 H 0.183 0.817 39 H 0.187 0.813 40 H 0.155 0.845 41 H 0.110 0.890 42 H 0.123 0.877 43 H 0.118 0.882 44 H 0.039 0.961 45 H 0.099 0.901 46 H 0.066 0.934 47 H 0.087 0.913 48 H 0.059 0.941 49 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -5.989 -15.470 15.316 22.578 hybrid contribution 1.612 0.689 -1.036 2.037 sum -4.377 -14.781 14.280 21.013 Atomic orbital electron populations 1.21737 0.97577 0.98985 0.99440 1.20294 0.92785 0.94305 0.83741 0.92920 1.22587 0.96991 0.88208 0.99552 1.61904 1.58847 1.01864 1.02374 1.21128 0.98337 0.90571 0.93272 1.19569 0.95022 0.93552 0.97808 1.21242 0.93579 0.96830 0.97027 1.20423 1.01092 0.88841 1.00278 1.18770 0.95139 0.85464 1.04498 1.19177 0.93929 0.86030 1.04852 1.20012 1.01560 0.86928 1.01241 1.84919 1.41193 1.17600 1.72357 1.18691 0.79242 0.84753 0.79354 1.91095 1.80408 1.11170 1.59139 1.45825 1.17021 1.07171 1.57140 1.22205 0.80840 0.98463 1.03453 1.22520 0.95310 0.98087 0.91150 1.20607 0.95802 0.84344 0.93288 0.96748 1.21710 0.99830 0.99597 0.97676 1.44512 1.66970 1.02454 1.18432 1.19402 1.14303 0.93910 1.10527 0.91596 1.25573 0.97415 1.00153 1.00956 1.70194 1.23705 1.11116 1.51421 0.85626 0.79260 0.78111 0.79072 1.20939 1.22362 1.21067 0.94139 0.94708 0.94290 0.89352 0.96647 0.87247 0.93732 0.81659 0.81280 0.84494 0.88996 0.87675 0.88183 0.96084 0.90052 0.93357 0.91319 0.94094 0.94619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.05 8.98 71.98 0.65 -4.41 16 2 C 0.20 8.59 2.35 44.96 0.11 8.70 16 3 H 0.05 2.72 6.25 -2.38 -0.01 2.70 16 4 C 0.06 1.87 5.01 86.38 0.43 2.30 16 5 N -0.53 -15.18 4.12 -899.82 -3.71 -18.89 16 6 C 0.09 1.90 5.12 85.56 0.44 2.34 16 7 C -0.06 -1.08 4.89 -19.85 -0.10 -1.17 16 8 C -0.07 -0.97 9.69 22.28 0.22 -0.75 16 9 C -0.09 -1.12 10.03 22.33 0.22 -0.90 16 10 C 0.06 1.11 6.84 38.31 0.26 1.37 16 11 C 0.01 0.14 7.35 22.66 0.17 0.30 16 12 C -0.08 -1.64 7.86 22.33 0.18 -1.47 16 13 O -0.26 -7.17 10.72 8.45 0.09 -7.08 16 14 C 0.62 17.04 9.07 129.79 1.18 18.22 16 15 O -0.53 -17.32 17.57 19.18 0.34 -16.98 16 16 N -0.54 -10.44 3.21 -784.49 -2.52 -12.96 16 17 C 0.09 0.87 11.21 127.77 1.43 2.31 16 18 C 0.06 1.89 4.63 86.39 0.40 2.29 16 19 C 0.17 6.64 3.24 44.96 0.15 6.78 16 20 H 0.01 0.64 7.60 -2.39 -0.02 0.62 16 21 C -0.13 -4.82 7.96 71.98 0.57 -4.25 16 22 N -0.60 -28.44 2.72 -650.63 -1.77 -30.21 16 23 C -0.25 -13.26 8.71 84.04 0.73 -12.52 16 24 H 0.07 3.44 6.17 -2.91 -0.02 3.42 16 25 C -0.05 -2.44 4.91 84.86 0.42 -2.02 16 26 N -0.92 -51.80 9.81 21.65 0.21 -51.59 16 27 Si 0.95 44.37 29.59 68.60 2.03 46.40 16 28 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 29 H -0.30 -14.04 7.11 99.48 0.71 -13.34 16 30 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 31 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 32 H 0.03 1.75 6.77 -2.39 -0.02 1.73 16 33 H 0.04 1.58 7.06 -2.39 -0.02 1.57 16 34 H 0.09 2.51 7.99 -2.39 -0.02 2.49 16 35 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.11 1.74 7.91 -2.38 -0.02 1.72 16 37 H 0.04 0.91 8.06 -2.39 -0.02 0.89 16 38 H 0.17 1.63 8.06 -2.91 -0.02 1.61 16 39 H 0.17 1.02 8.06 -2.91 -0.02 1.00 16 40 H 0.14 2.82 7.92 -2.91 -0.02 2.80 16 41 H 0.09 1.02 7.72 -2.39 -0.02 1.00 16 42 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 43 H 0.10 0.60 8.14 -2.38 -0.02 0.58 16 44 H 0.02 0.71 8.14 -2.38 -0.02 0.69 16 45 H 0.08 2.34 5.65 -2.39 -0.01 2.32 16 46 H 0.05 1.82 7.32 -2.39 -0.02 1.80 16 47 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 48 H 0.04 1.65 7.79 -2.39 -0.02 1.63 16 49 H 0.24 13.60 8.32 -92.71 -0.77 12.83 16 Total: -1.00 -69.30 384.44 3.07 -66.23 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: 0.95 Total: 7.98 kcal Atomic # 6 Polarization: 9.66 SS G_CDS: 7.45 Total: 17.10 kcal Atomic # 7 Polarization: -105.87 SS G_CDS: -7.78 Total: -113.65 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: 0.43 Total: -24.07 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -69.30 3.07 -66.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331567720.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.258 kcal (2) G-P(sol) polarization free energy of solvation -69.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds