Wall clock time and date at job start Wed Apr 1 2020 04:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46959 * 2 1 4 4 C 1.52998 * 109.47225 * 119.99553 * 2 1 3 5 5 C 1.50699 * 109.47603 * 185.00158 * 4 2 1 6 6 C 1.38677 * 120.41533 * 89.99859 * 5 4 2 7 7 C 1.38632 * 118.41570 * 180.02562 * 6 5 4 8 8 C 1.38226 * 119.16191 * 359.97438 * 7 6 5 9 9 N 1.31858 * 120.76590 * 0.02562 * 8 7 6 10 10 C 1.31883 * 121.72085 * 359.70539 * 9 8 7 11 11 N 1.46497 * 109.47343 * 239.99782 * 2 1 3 12 12 C 1.34776 * 120.00089 * 85.00097 * 11 2 1 13 13 O 1.21352 * 120.00150 * 359.97438 * 12 11 2 14 14 C 1.49446 * 120.00278 * 180.02562 * 12 11 2 15 15 O 1.21352 * 120.00120 * 353.21967 * 14 12 11 16 16 N 1.34773 * 120.00327 * 172.94221 * 14 12 11 17 17 C 1.46932 * 120.62908 * 351.59118 * 16 14 12 18 18 C 1.53191 * 108.77717 * 233.58246 * 17 16 14 19 19 C 1.53046 * 109.31271 * 305.36746 * 18 17 16 20 20 C 1.53042 * 109.53709 * 61.36385 * 19 18 17 21 21 H 1.08999 * 109.49889 * 58.58857 * 20 19 18 22 22 C 1.50698 * 109.49395 * 178.68365 * 20 19 18 23 23 H 1.07999 * 120.00170 * 359.97438 * 22 20 19 24 24 C 1.37882 * 119.99754 * 179.97438 * 22 20 19 25 25 N 1.31504 * 120.00044 * 359.97438 * 24 22 20 26 26 Si 1.86801 * 119.99685 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47367 * 60.00199 * 26 24 22 28 28 H 1.48504 * 109.46696 * 179.97438 * 26 24 22 29 29 H 1.48493 * 109.47375 * 299.99931 * 26 24 22 30 30 C 1.46927 * 120.63485 * 171.31070 * 16 14 12 31 31 H 1.09004 * 109.46959 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47284 * 300.00062 * 1 2 3 33 33 H 1.09008 * 109.46922 * 60.00510 * 1 2 3 34 34 H 1.08998 * 109.47324 * 305.00560 * 4 2 1 35 35 H 1.09002 * 109.46706 * 64.99716 * 4 2 1 36 36 H 1.07992 * 120.79004 * 359.97438 * 6 5 4 37 37 H 1.08001 * 120.41426 * 180.02562 * 7 6 5 38 38 H 1.07998 * 119.61810 * 179.97438 * 8 7 6 39 39 H 1.08010 * 119.61625 * 180.31173 * 10 9 8 40 40 H 0.96998 * 120.00343 * 265.00264 * 11 2 1 41 41 H 1.08996 * 109.58420 * 353.37648 * 17 16 14 42 42 H 1.09002 * 109.58475 * 113.65315 * 17 16 14 43 43 H 1.09003 * 109.49522 * 65.31300 * 18 17 16 44 44 H 1.08991 * 109.49750 * 185.41158 * 18 17 16 45 45 H 1.08995 * 109.45628 * 181.38447 * 19 18 17 46 46 H 1.08994 * 109.45842 * 301.35716 * 19 18 17 47 47 H 0.97001 * 120.00475 * 180.02562 * 25 24 22 48 48 H 1.09000 * 109.58496 * 246.20784 * 30 16 14 49 49 H 1.09000 * 109.58204 * 6.62924 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5419 -0.6148 1.3128 6 6 4.1433 0.4492 1.9681 7 6 5.5281 0.5062 2.0008 8 6 6.2581 -0.4925 1.3840 9 7 5.6521 -1.4897 0.7699 10 6 4.3371 -1.5789 0.7235 11 7 2.0184 -0.6906 -1.1961 12 6 2.1472 -0.0183 -2.3571 13 8 1.8581 1.1590 -2.4118 14 6 2.6448 -0.7230 -3.5774 15 8 3.0490 -1.8644 -3.4967 16 7 2.6396 -0.0928 -4.7687 17 6 1.9825 1.2124 -4.9223 18 6 0.9873 1.1298 -6.0841 19 6 1.7139 0.6403 -7.3390 20 6 2.2815 -0.7588 -7.0888 21 1 1.4711 -1.4385 -6.8257 22 6 2.9687 -1.2530 -8.3356 23 1 2.9976 -0.6319 -9.2186 24 6 3.5607 -2.4983 -8.3489 25 7 3.5259 -3.2543 -7.2735 26 14 4.4119 -3.1112 -9.8946 27 1 5.5164 -2.1851 -10.2519 28 1 4.9636 -4.4682 -9.6508 29 1 3.4329 -3.1674 -11.0097 30 6 3.2962 -0.6949 -5.9371 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8901 34 1 1.6054 -0.2617 2.1370 35 1 1.7516 -1.7714 1.2057 36 1 3.5471 1.2155 2.4410 37 1 6.0301 1.3202 2.5026 38 1 7.3372 -0.4552 1.4046 39 1 3.8764 -2.4133 0.2153 40 1 2.2491 -1.6318 -1.1526 41 1 1.4522 1.4648 -4.0041 42 1 2.7313 1.9759 -5.1334 43 1 0.1891 0.4322 -5.8304 44 1 0.5633 2.1163 -6.2707 45 1 1.0133 0.6041 -8.1732 46 1 2.5277 1.3248 -7.5777 47 1 3.9427 -4.1302 -7.2827 48 1 4.1496 -0.0842 -6.2317 49 1 3.6328 -1.7014 -5.6887 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333889796.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:56 Heat of formation + Delta-G solvation = -32.613907 kcal Electronic energy + Delta-G solvation = -30852.249166 eV Core-core repulsion = 26779.299619 eV Total energy + Delta-G solvation = -4072.949547 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.75491 -40.21279 -38.47007 -36.85336 -36.44776 -33.46474 -33.06740 -32.04569 -31.70885 -30.87935 -29.72729 -27.09936 -25.97030 -24.98038 -23.81805 -23.43897 -22.37896 -21.78920 -20.93138 -20.16422 -18.83940 -17.33968 -17.21917 -16.91366 -16.38828 -16.20579 -15.70886 -15.49626 -15.44228 -14.72329 -14.49385 -14.21393 -14.11125 -13.85064 -13.56726 -13.35729 -13.30260 -13.16399 -12.90728 -12.75955 -12.62335 -12.53144 -12.29872 -12.13780 -11.76414 -11.59468 -11.39415 -11.31143 -10.94573 -10.70023 -10.45422 -10.28140 -10.10985 -10.02847 -9.85948 -9.60434 -9.29896 -9.20372 -9.13554 -9.09462 -8.57466 -8.42873 -7.79368 -5.99151 -4.07923 0.88151 1.07079 1.82614 2.70158 3.33080 3.38808 3.40286 3.59121 3.65836 3.95067 4.19359 4.41327 4.43780 4.52431 4.55406 4.70721 4.73763 4.80990 4.96186 5.03510 5.18124 5.30627 5.33068 5.42972 5.45275 5.57460 5.62372 5.67278 5.72356 5.85551 5.87910 5.95946 5.99751 6.15934 6.26206 6.38123 6.48564 6.54460 6.61603 6.72621 6.86285 6.99784 7.04967 7.19437 7.25872 7.60434 7.81725 7.84083 7.96070 7.99007 8.18654 8.37556 8.60775 8.95674 9.57506 11.06091 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013050 B = 0.002926 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.086727 B = 9568.495180 C =10794.744391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.145 3.855 3 H 0.092 0.908 4 C -0.085 4.085 5 C -0.138 4.138 6 C -0.073 4.073 7 C -0.173 4.173 8 C 0.094 3.906 9 N -0.478 5.478 10 C 0.110 3.890 11 N -0.700 5.700 12 C 0.512 3.488 13 O -0.519 6.519 14 C 0.492 3.508 15 O -0.519 6.519 16 N -0.569 5.569 17 C 0.072 3.928 18 C -0.133 4.133 19 C -0.113 4.113 20 C 0.043 3.957 21 H 0.030 0.970 22 C -0.522 4.522 23 H 0.058 0.942 24 C 0.063 3.937 25 N -0.880 5.880 26 Si 0.893 3.107 27 H -0.277 1.277 28 H -0.287 1.287 29 H -0.277 1.277 30 C 0.108 3.892 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.133 0.867 37 H 0.134 0.866 38 H 0.154 0.846 39 H 0.154 0.846 40 H 0.410 0.590 41 H 0.125 0.875 42 H 0.059 0.941 43 H 0.057 0.943 44 H 0.060 0.940 45 H 0.051 0.949 46 H 0.049 0.951 47 H 0.264 0.736 48 H 0.047 0.953 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.229 8.351 21.360 23.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.040 3.960 3 H 0.110 0.890 4 C -0.123 4.123 5 C -0.140 4.140 6 C -0.099 4.099 7 C -0.193 4.193 8 C -0.063 4.063 9 N -0.185 5.185 10 C -0.047 4.047 11 N -0.354 5.354 12 C 0.295 3.705 13 O -0.396 6.396 14 C 0.273 3.727 15 O -0.396 6.396 16 N -0.302 5.302 17 C -0.050 4.050 18 C -0.171 4.171 19 C -0.150 4.150 20 C 0.023 3.977 21 H 0.048 0.952 22 C -0.560 4.560 23 H 0.076 0.924 24 C -0.140 4.140 25 N -0.518 5.518 26 Si 0.721 3.279 27 H -0.202 1.202 28 H -0.212 1.212 29 H -0.203 1.203 30 C -0.011 4.011 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.112 0.888 35 H 0.104 0.896 36 H 0.151 0.849 37 H 0.152 0.848 38 H 0.171 0.829 39 H 0.171 0.829 40 H 0.247 0.753 41 H 0.142 0.858 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.069 0.931 46 H 0.068 0.932 47 H 0.074 0.926 48 H 0.066 0.934 49 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.630 7.747 21.012 22.549 hybrid contribution 0.185 -0.019 -0.520 0.552 sum -2.445 7.729 20.493 22.038 Atomic orbital electron populations 1.22200 0.94371 1.02732 1.02972 1.21027 0.94304 0.97602 0.83034 0.88986 1.20893 0.90609 1.02620 0.98176 1.20828 0.96871 0.96522 0.99748 1.21470 0.94876 0.96877 0.96650 1.22141 0.94796 1.00600 1.01747 1.22817 1.00652 0.89827 0.92992 1.67726 1.11443 1.23956 1.15425 1.22733 0.89172 0.97651 0.95185 1.45921 1.65805 1.14857 1.08835 1.20760 0.77655 0.86969 0.85097 1.90460 1.49535 1.15966 1.83620 1.19834 0.81723 0.86689 0.84452 1.90779 1.47335 1.16262 1.85206 1.48426 1.52009 1.20533 1.09194 1.22671 0.96241 0.84086 1.02023 1.21954 0.98184 1.00391 0.96567 1.21659 0.98715 0.99367 0.95304 1.19019 0.94361 0.91025 0.93245 0.95189 1.21054 1.36231 1.01228 0.97499 0.92356 1.25057 0.96056 0.96694 0.96210 1.69870 1.43791 1.10646 1.27461 0.86643 0.79860 0.77954 0.83462 1.20249 1.21236 1.20288 1.22566 0.95232 1.00521 0.82809 0.91972 0.91355 0.91509 0.88819 0.89599 0.84900 0.84849 0.82857 0.82924 0.75305 0.85750 0.92304 0.92446 0.92170 0.93066 0.93198 0.92575 0.93418 0.85855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 9.48 37.16 0.35 -0.97 16 2 C 0.14 1.32 2.56 -67.93 -0.17 1.15 16 3 H 0.09 0.96 7.58 -51.93 -0.39 0.57 16 4 C -0.08 -0.57 4.92 -27.88 -0.14 -0.71 16 5 C -0.14 -1.25 4.96 -104.48 -0.52 -1.77 16 6 C -0.07 -0.60 9.86 -39.27 -0.39 -0.99 16 7 C -0.17 -1.47 10.11 -39.44 -0.40 -1.87 16 8 C 0.09 0.98 11.18 -17.54 -0.20 0.78 16 9 N -0.48 -6.24 10.36 -13.25 -0.14 -6.38 16 10 C 0.11 1.25 10.29 -17.55 -0.18 1.07 16 11 N -0.70 -8.72 4.53 -54.24 -0.25 -8.97 16 12 C 0.51 8.39 7.70 -11.59 -0.09 8.30 16 13 O -0.52 -8.74 12.85 5.49 0.07 -8.67 16 14 C 0.49 10.06 7.73 -11.59 -0.09 9.97 16 15 O -0.52 -12.01 15.93 5.49 0.09 -11.92 16 16 N -0.57 -12.06 2.97 -173.01 -0.51 -12.57 16 17 C 0.07 1.30 5.98 -3.71 -0.02 1.28 16 18 C -0.13 -2.35 6.08 -26.61 -0.16 -2.51 16 19 C -0.11 -2.34 5.10 -26.69 -0.14 -2.47 16 20 C 0.04 1.07 2.26 -91.43 -0.21 0.86 16 21 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 22 C -0.52 -14.24 8.56 -34.44 -0.29 -14.53 16 23 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 24 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 25 N -0.88 -25.58 11.41 55.43 0.63 -24.95 16 26 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 27 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 28 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 29 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 30 C 0.11 2.67 5.44 -3.49 -0.02 2.65 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 34 H 0.09 0.43 8.10 -51.93 -0.42 0.01 16 35 H 0.09 0.50 8.09 -51.93 -0.42 0.08 16 36 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 37 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 38 H 0.15 1.23 8.06 -52.49 -0.42 0.81 16 39 H 0.15 1.60 7.61 -52.48 -0.40 1.20 16 40 H 0.41 4.94 7.37 -40.82 -0.30 4.64 16 41 H 0.13 2.16 4.31 -54.80 -0.24 1.93 16 42 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 45 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 48 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 49 H 0.12 3.48 5.15 -51.93 -0.27 3.21 16 LS Contribution 396.29 15.07 5.97 5.97 Total: -1.00 -32.93 396.29 -9.38 -42.31 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -7.48 Total: 6.98 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: -2.75 Total: 1.89 kcal Atomic # 7 Polarization: -52.61 SS G_CDS: -0.26 Total: -52.87 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: 0.16 Total: -20.59 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.93 -9.38 -42.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333889796.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.696 kcal (2) G-P(sol) polarization free energy of solvation -32.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds