Wall clock time and date at job start Wed Apr 1 2020 04:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46959 * 2 1 4 4 C 1.52998 * 109.47225 * 119.99553 * 2 1 3 5 5 C 1.50699 * 109.47603 * 185.00158 * 4 2 1 6 6 C 1.38677 * 120.41533 * 89.99859 * 5 4 2 7 7 C 1.38632 * 118.41570 * 180.02562 * 6 5 4 8 8 C 1.38226 * 119.16191 * 359.97438 * 7 6 5 9 9 N 1.31858 * 120.76590 * 0.02562 * 8 7 6 10 10 C 1.31883 * 121.72085 * 359.70539 * 9 8 7 11 11 N 1.46497 * 109.47343 * 239.99782 * 2 1 3 12 12 C 1.34776 * 120.00089 * 85.00097 * 11 2 1 13 13 O 1.21352 * 120.00150 * 359.97438 * 12 11 2 14 14 C 1.49446 * 120.00278 * 180.02562 * 12 11 2 15 15 O 1.21352 * 120.00120 * 353.21967 * 14 12 11 16 16 N 1.34773 * 120.00327 * 172.94221 * 14 12 11 17 17 C 1.46932 * 120.62908 * 351.59118 * 16 14 12 18 18 C 1.53191 * 108.77717 * 233.58246 * 17 16 14 19 19 C 1.53046 * 109.31271 * 305.36746 * 18 17 16 20 20 C 1.53042 * 109.53709 * 61.36385 * 19 18 17 21 21 H 1.08999 * 109.49889 * 58.58857 * 20 19 18 22 22 C 1.50698 * 109.49395 * 178.68365 * 20 19 18 23 23 H 1.07999 * 120.00170 * 359.97438 * 22 20 19 24 24 C 1.37882 * 119.99754 * 179.97438 * 22 20 19 25 25 N 1.31504 * 120.00044 * 359.97438 * 24 22 20 26 26 Si 1.86801 * 119.99685 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47367 * 60.00199 * 26 24 22 28 28 H 1.48504 * 109.46696 * 179.97438 * 26 24 22 29 29 H 1.48493 * 109.47375 * 299.99931 * 26 24 22 30 30 C 1.46927 * 120.63485 * 171.31070 * 16 14 12 31 31 H 1.09004 * 109.46959 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47284 * 300.00062 * 1 2 3 33 33 H 1.09008 * 109.46922 * 60.00510 * 1 2 3 34 34 H 1.08998 * 109.47324 * 305.00560 * 4 2 1 35 35 H 1.09002 * 109.46706 * 64.99716 * 4 2 1 36 36 H 1.07992 * 120.79004 * 359.97438 * 6 5 4 37 37 H 1.08001 * 120.41426 * 180.02562 * 7 6 5 38 38 H 1.07998 * 119.61810 * 179.97438 * 8 7 6 39 39 H 1.08010 * 119.61625 * 180.31173 * 10 9 8 40 40 H 0.96998 * 120.00343 * 265.00264 * 11 2 1 41 41 H 1.08996 * 109.58420 * 353.37648 * 17 16 14 42 42 H 1.09002 * 109.58475 * 113.65315 * 17 16 14 43 43 H 1.09003 * 109.49522 * 65.31300 * 18 17 16 44 44 H 1.08991 * 109.49750 * 185.41158 * 18 17 16 45 45 H 1.08995 * 109.45628 * 181.38447 * 19 18 17 46 46 H 1.08994 * 109.45842 * 301.35716 * 19 18 17 47 47 H 0.97001 * 120.00475 * 180.02562 * 25 24 22 48 48 H 1.09000 * 109.58496 * 246.20784 * 30 16 14 49 49 H 1.09000 * 109.58204 * 6.62924 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5419 -0.6148 1.3128 6 6 4.1433 0.4492 1.9681 7 6 5.5281 0.5062 2.0008 8 6 6.2581 -0.4925 1.3840 9 7 5.6521 -1.4897 0.7699 10 6 4.3371 -1.5789 0.7235 11 7 2.0184 -0.6906 -1.1961 12 6 2.1472 -0.0183 -2.3571 13 8 1.8581 1.1590 -2.4118 14 6 2.6448 -0.7230 -3.5774 15 8 3.0490 -1.8644 -3.4967 16 7 2.6396 -0.0928 -4.7687 17 6 1.9825 1.2124 -4.9223 18 6 0.9873 1.1298 -6.0841 19 6 1.7139 0.6403 -7.3390 20 6 2.2815 -0.7588 -7.0888 21 1 1.4711 -1.4385 -6.8257 22 6 2.9687 -1.2530 -8.3356 23 1 2.9976 -0.6319 -9.2186 24 6 3.5607 -2.4983 -8.3489 25 7 3.5259 -3.2543 -7.2735 26 14 4.4119 -3.1112 -9.8946 27 1 5.5164 -2.1851 -10.2519 28 1 4.9636 -4.4682 -9.6508 29 1 3.4329 -3.1674 -11.0097 30 6 3.2962 -0.6949 -5.9371 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8901 34 1 1.6054 -0.2617 2.1370 35 1 1.7516 -1.7714 1.2057 36 1 3.5471 1.2155 2.4410 37 1 6.0301 1.3202 2.5026 38 1 7.3372 -0.4552 1.4046 39 1 3.8764 -2.4133 0.2153 40 1 2.2491 -1.6318 -1.1526 41 1 1.4522 1.4648 -4.0041 42 1 2.7313 1.9759 -5.1334 43 1 0.1891 0.4322 -5.8304 44 1 0.5633 2.1163 -6.2707 45 1 1.0133 0.6041 -8.1732 46 1 2.5277 1.3248 -7.5777 47 1 3.9427 -4.1302 -7.2827 48 1 4.1496 -0.0842 -6.2317 49 1 3.6328 -1.7014 -5.6887 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333889796.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:55 Heat of formation + Delta-G solvation = -54.031532 kcal Electronic energy + Delta-G solvation = -30853.177904 eV Core-core repulsion = 26779.299619 eV Total energy + Delta-G solvation = -4073.878285 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.00666 -41.12845 -39.89199 -38.50894 -37.49322 -35.25570 -34.11674 -33.45757 -32.77242 -31.72231 -31.56988 -27.74423 -27.66694 -26.82712 -24.78268 -24.51941 -23.54854 -23.24088 -21.85765 -21.58670 -20.47572 -18.83784 -18.27975 -18.00407 -17.96336 -17.34847 -16.98427 -16.82627 -16.46456 -16.38130 -15.92395 -15.57600 -15.11718 -14.93545 -14.86339 -14.72292 -14.63475 -14.39464 -13.99551 -13.96177 -13.86628 -13.62283 -13.49166 -13.28376 -12.93190 -12.87027 -12.82338 -12.54084 -12.29578 -12.25025 -12.16450 -12.05371 -11.75147 -11.62852 -11.15535 -10.98775 -10.75675 -10.55089 -10.39098 -10.30753 -10.08561 -9.88160 -9.54790 -8.11695 -6.28871 0.16255 0.36706 0.38827 1.36821 1.41700 1.44289 1.51133 2.15271 2.41015 2.58165 2.85069 3.16084 3.32369 3.53047 3.74841 3.88418 3.94753 4.09405 4.11150 4.13688 4.16417 4.29834 4.32103 4.35867 4.56663 4.60370 4.63703 4.71677 4.79588 4.81783 4.84760 4.90610 4.96261 5.04607 5.06991 5.16740 5.20433 5.21803 5.26458 5.30720 5.35355 5.41632 5.52030 5.56459 5.81083 5.83139 5.92857 6.01419 6.29498 6.43181 6.74303 6.83205 6.99807 7.06731 7.40952 8.91729 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013050 B = 0.002926 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.086727 B = 9568.495180 C =10794.744391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.143 3.857 3 H 0.087 0.913 4 C -0.076 4.076 5 C -0.137 4.137 6 C -0.075 4.075 7 C -0.169 4.169 8 C 0.071 3.929 9 N -0.523 5.523 10 C 0.081 3.919 11 N -0.684 5.684 12 C 0.521 3.479 13 O -0.522 6.522 14 C 0.480 3.520 15 O -0.557 6.557 16 N -0.578 5.578 17 C 0.072 3.928 18 C -0.125 4.125 19 C -0.107 4.107 20 C 0.042 3.958 21 H -0.010 1.010 22 C -0.538 4.538 23 H 0.062 0.938 24 C 0.011 3.989 25 N -0.913 5.913 26 Si 0.959 3.041 27 H -0.268 1.268 28 H -0.288 1.288 29 H -0.268 1.268 30 C 0.121 3.879 31 H 0.067 0.933 32 H 0.099 0.901 33 H 0.044 0.956 34 H 0.130 0.870 35 H 0.096 0.904 36 H 0.167 0.833 37 H 0.164 0.836 38 H 0.166 0.834 39 H 0.147 0.853 40 H 0.412 0.588 41 H 0.140 0.860 42 H 0.070 0.930 43 H 0.049 0.951 44 H 0.101 0.899 45 H 0.055 0.945 46 H 0.056 0.944 47 H 0.261 0.739 48 H 0.042 0.958 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.432 10.880 23.020 25.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.040 3.960 3 H 0.105 0.895 4 C -0.114 4.114 5 C -0.139 4.139 6 C -0.100 4.100 7 C -0.189 4.189 8 C -0.086 4.086 9 N -0.232 5.232 10 C -0.076 4.076 11 N -0.336 5.336 12 C 0.302 3.698 13 O -0.401 6.401 14 C 0.263 3.737 15 O -0.436 6.436 16 N -0.309 5.309 17 C -0.049 4.049 18 C -0.162 4.162 19 C -0.144 4.144 20 C 0.022 3.978 21 H 0.008 0.992 22 C -0.577 4.577 23 H 0.081 0.919 24 C -0.188 4.188 25 N -0.551 5.551 26 Si 0.784 3.216 27 H -0.193 1.193 28 H -0.213 1.213 29 H -0.193 1.193 30 C -0.001 4.001 31 H 0.086 0.914 32 H 0.118 0.882 33 H 0.063 0.937 34 H 0.148 0.852 35 H 0.114 0.886 36 H 0.185 0.815 37 H 0.181 0.819 38 H 0.184 0.816 39 H 0.164 0.836 40 H 0.249 0.751 41 H 0.156 0.844 42 H 0.088 0.912 43 H 0.068 0.932 44 H 0.119 0.881 45 H 0.074 0.926 46 H 0.075 0.925 47 H 0.070 0.930 48 H 0.060 0.940 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.862 10.304 22.704 25.230 hybrid contribution 0.570 -0.808 -0.955 1.374 sum -3.291 9.496 21.749 23.959 Atomic orbital electron populations 1.22176 0.92934 1.03282 1.03406 1.21331 0.95290 0.97199 0.82167 0.89505 1.20947 0.88941 1.03447 0.98034 1.21042 0.97954 0.95977 0.98941 1.21938 0.95137 0.97032 0.95918 1.22496 0.95246 1.00443 1.00680 1.23183 1.01669 0.90188 0.93532 1.67632 1.12629 1.25789 1.17124 1.22847 0.89266 0.98830 0.96626 1.46016 1.64067 1.14922 1.08644 1.19853 0.78427 0.86705 0.84774 1.90435 1.50402 1.15672 1.83574 1.20687 0.80900 0.86452 0.85651 1.90750 1.48816 1.18090 1.85987 1.48459 1.52136 1.21642 1.08682 1.22904 0.96481 0.82541 1.02951 1.21921 0.97469 1.02241 0.94618 1.21555 0.99149 0.96587 0.97152 1.18947 0.93147 0.92941 0.92731 0.99182 1.21467 1.36152 1.01570 0.98475 0.91930 1.25891 0.96793 0.97007 0.99154 1.70060 1.44787 1.10756 1.29543 0.85602 0.78980 0.77258 0.79782 1.19313 1.21327 1.19323 1.22018 0.95212 0.98580 0.84246 0.91409 0.88238 0.93724 0.85204 0.88561 0.81532 0.81888 0.81641 0.83574 0.75123 0.84369 0.91202 0.93208 0.88066 0.92637 0.92526 0.93006 0.93995 0.89834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.09 9.48 71.98 0.68 -1.41 16 2 C 0.14 2.25 2.56 44.99 0.12 2.36 16 3 H 0.09 1.54 7.58 -2.39 -0.02 1.52 16 4 C -0.08 -0.78 4.92 29.85 0.15 -0.63 16 5 C -0.14 -2.25 4.96 -19.77 -0.10 -2.35 16 6 C -0.07 -1.01 9.86 22.47 0.22 -0.79 16 7 C -0.17 -2.53 10.11 22.36 0.23 -2.30 16 8 C 0.07 1.47 11.18 84.69 0.95 2.42 16 9 N -0.52 -14.21 10.36 -195.84 -2.03 -16.24 16 10 C 0.08 1.88 10.29 84.67 0.87 2.76 16 11 N -0.68 -16.57 4.53 -443.87 -2.01 -18.59 16 12 C 0.52 16.94 7.70 87.27 0.67 17.61 16 13 O -0.52 -16.87 12.85 -3.25 -0.04 -16.91 16 14 C 0.48 20.35 7.73 87.27 0.67 21.03 16 15 O -0.56 -27.39 15.93 -3.25 -0.05 -27.45 16 16 N -0.58 -25.10 2.97 -819.64 -2.43 -27.53 16 17 C 0.07 2.52 5.98 86.36 0.52 3.04 16 18 C -0.12 -4.20 6.08 30.67 0.19 -4.01 16 19 C -0.11 -4.37 5.10 30.62 0.16 -4.21 16 20 C 0.04 2.16 2.26 -11.32 -0.03 2.13 16 21 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 22 C -0.54 -30.09 8.56 25.60 0.22 -29.87 16 23 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 24 C 0.01 0.64 5.30 84.66 0.45 1.09 16 25 N -0.91 -55.58 11.41 21.45 0.24 -55.34 16 26 Si 0.96 44.59 29.54 68.60 2.03 46.62 16 27 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 28 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 29 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 30 C 0.12 6.25 5.44 86.51 0.47 6.72 16 31 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.04 0.81 8.14 -2.38 -0.02 0.79 16 34 H 0.13 0.51 8.10 -2.39 -0.02 0.49 16 35 H 0.10 0.85 8.09 -2.39 -0.02 0.83 16 36 H 0.17 1.09 8.06 -2.91 -0.02 1.07 16 37 H 0.16 1.37 8.06 -2.91 -0.02 1.34 16 38 H 0.17 2.70 8.06 -2.91 -0.02 2.68 16 39 H 0.15 3.31 7.61 -2.91 -0.02 3.29 16 40 H 0.41 10.01 7.37 -92.71 -0.68 9.32 16 41 H 0.14 4.56 4.31 -47.81 -0.21 4.35 16 42 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 43 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 45 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 46 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 47 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 48 H 0.04 2.15 8.14 -2.39 -0.02 2.13 16 49 H 0.08 5.02 5.15 -2.39 -0.01 5.01 16 Total: -1.00 -76.67 396.29 2.22 -74.45 By element: Atomic # 1 Polarization: 27.33 SS G_CDS: 0.08 Total: 27.41 kcal Atomic # 6 Polarization: 7.14 SS G_CDS: 6.43 Total: 13.57 kcal Atomic # 7 Polarization: -111.47 SS G_CDS: -6.23 Total: -117.70 kcal Atomic # 8 Polarization: -44.26 SS G_CDS: -0.09 Total: -44.36 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -76.67 2.22 -74.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333889796.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.423 kcal (2) G-P(sol) polarization free energy of solvation -76.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds