Wall clock time and date at job start Wed Apr 1 2020 04:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.47163 * 2 1 4 4 C 1.47207 * 109.46626 * 240.00140 * 2 1 3 5 5 N 2.60803 * 109.46784 * 240.00263 * 2 1 3 6 6 C 1.50696 * 109.47296 * 120.00515 * 2 1 3 7 7 O 1.21284 * 120.00508 * 119.99821 * 6 2 1 8 8 N 1.34783 * 119.99987 * 299.99633 * 6 2 1 9 9 C 1.46496 * 120.00172 * 180.27366 * 8 6 2 10 10 C 1.52996 * 109.47027 * 179.72512 * 9 8 6 11 11 C 1.53008 * 109.47075 * 180.02562 * 10 9 8 12 12 H 1.09001 * 109.46885 * 305.00233 * 11 10 9 13 13 C 1.52999 * 109.47150 * 185.00347 * 11 10 9 14 14 N 1.46898 * 109.46969 * 65.00010 * 11 10 9 15 15 C 1.46907 * 110.99569 * 205.00066 * 14 11 10 16 16 C 1.50703 * 109.46637 * 180.02562 * 15 14 11 17 17 C 1.38301 * 119.92900 * 269.72149 * 16 15 14 18 18 C 1.38102 * 120.06875 * 179.72725 * 17 16 15 19 19 C 1.38880 * 119.92732 * 0.57673 * 18 17 16 20 20 O 1.35753 * 120.06745 * 179.68441 * 19 18 17 21 21 C 1.34834 * 116.99766 * 174.48479 * 20 19 18 22 22 H 1.07998 * 119.99857 * 5.05775 * 21 20 19 23 23 C 1.38654 * 119.99575 * 185.05206 * 21 20 19 24 24 N 1.31552 * 120.00172 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99618 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47234 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.47505 * 120.00212 * 25 23 21 28 28 H 1.48504 * 109.46884 * 239.99898 * 25 23 21 29 29 C 1.38881 * 119.86366 * 359.70057 * 19 18 17 30 30 C 1.38106 * 119.92992 * 0.02562 * 29 19 18 31 31 H 1.09002 * 109.46615 * 299.99525 * 1 2 3 32 32 H 1.08991 * 109.47425 * 59.99635 * 1 2 3 33 33 H 1.09003 * 109.46734 * 179.97438 * 1 2 3 34 34 H 0.97003 * 119.99503 * 0.02562 * 8 6 2 35 35 H 1.08993 * 109.47212 * 299.73167 * 9 8 6 36 36 H 1.09005 * 109.46866 * 59.72687 * 9 8 6 37 37 H 1.09001 * 109.47504 * 300.00108 * 10 9 8 38 38 H 1.08991 * 109.47046 * 60.00431 * 10 9 8 39 39 H 1.08994 * 109.47132 * 180.02562 * 13 11 10 40 40 H 1.09009 * 109.46941 * 299.99447 * 13 11 10 41 41 H 1.08998 * 109.47197 * 59.99260 * 13 11 10 42 42 H 1.00901 * 111.00140 * 81.04684 * 14 11 10 43 43 H 1.08993 * 109.47387 * 300.00130 * 15 14 11 44 44 H 1.09003 * 109.47000 * 60.00709 * 15 14 11 45 45 H 1.07999 * 119.96581 * 359.97438 * 17 16 15 46 46 H 1.07996 * 120.03632 * 180.27715 * 18 17 16 47 47 H 0.97004 * 119.99940 * 179.97438 * 24 23 21 48 48 H 1.07999 * 120.03289 * 179.97438 * 29 19 18 49 49 H 1.07999 * 119.96446 * 180.02562 * 30 29 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0206 -0.6939 -1.2020 5 7 2.3993 -1.2294 -2.1295 6 6 2.0324 -0.7105 1.2304 7 8 2.7297 -1.6966 1.1191 8 7 1.7069 -0.2501 2.4546 9 6 2.2002 -0.9372 3.6506 10 6 1.6948 -0.2128 4.8999 11 6 2.2105 -0.9301 6.1491 12 1 1.9228 -1.9807 6.1096 13 6 1.6051 -0.2820 7.3958 14 7 3.6747 -0.8251 6.2046 15 6 4.2525 -1.9295 6.9822 16 6 5.7525 -1.7880 7.0175 17 6 6.5251 -2.3862 6.0387 18 6 7.8995 -2.2537 6.0650 19 6 8.5064 -1.5289 7.0825 20 8 9.8576 -1.4023 7.1147 21 6 10.3741 -0.5928 8.0612 22 1 9.7268 -0.1450 8.8006 23 6 11.7364 -0.3354 8.0851 24 7 12.5249 -0.8813 7.1847 25 14 12.4520 0.7856 9.3969 26 1 11.3630 1.2680 10.2837 27 1 13.4490 0.0337 10.2005 28 1 13.1130 1.9468 8.7488 29 6 7.7281 -0.9343 8.0671 30 6 6.3538 -1.0657 8.0320 31 1 -0.3632 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.1490 0.5384 2.5436 35 1 1.8374 -1.9650 3.6548 36 1 3.2902 -0.9368 3.6463 37 1 2.0577 0.8150 4.8957 38 1 0.6049 -0.2133 4.9042 39 1 1.9728 -0.7927 8.2857 40 1 1.8929 0.7686 7.4353 41 1 0.5187 -0.3598 7.3546 42 1 3.9594 0.0679 6.5782 43 1 3.8613 -1.9015 7.9992 44 1 3.9876 -2.8790 6.5170 45 1 6.0529 -2.9541 5.2508 46 1 8.5021 -2.7173 5.2980 47 1 13.4779 -0.7009 7.2013 48 1 8.1972 -0.3704 8.8598 49 1 5.7480 -0.6032 8.7972 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001366450282.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:28 Heat of formation + Delta-G solvation = -23.384573 kcal Electronic energy + Delta-G solvation = -28429.869177 eV Core-core repulsion = 24357.319845 eV Total energy + Delta-G solvation = -4072.549333 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.37774 -39.11162 -37.99223 -36.94115 -36.44260 -35.11781 -33.81059 -32.50144 -31.82702 -30.13881 -29.34023 -28.34504 -25.88618 -25.54382 -24.26877 -23.40945 -21.94489 -21.43141 -20.82138 -20.35683 -18.46409 -17.95979 -17.61137 -16.98620 -16.26681 -15.90319 -15.63535 -15.36658 -14.91237 -14.64487 -14.52494 -14.40691 -13.97362 -13.87808 -13.67090 -13.55473 -13.40210 -13.35696 -13.10372 -13.00412 -12.75358 -12.67597 -12.52189 -12.33664 -12.13610 -11.98172 -11.97019 -11.64234 -11.62769 -11.49449 -11.24244 -11.11136 -10.77013 -10.60103 -10.54049 -10.40774 -10.20272 -9.38667 -9.31768 -8.83670 -8.38801 -8.14605 -7.16691 -6.44322 -4.03215 2.14285 2.15720 2.24806 2.30074 2.47703 2.97450 3.11846 3.13238 3.18895 3.38720 3.96627 4.13305 4.20484 4.28652 4.47619 4.48627 4.66511 4.77898 4.90291 4.94067 5.05164 5.09556 5.11051 5.16994 5.30733 5.33052 5.34792 5.40809 5.42534 5.50824 5.64541 5.71256 5.80834 5.87754 5.89445 5.92938 5.99806 6.10815 6.23836 6.45683 6.73365 6.91579 7.00384 7.03082 7.08795 7.23575 7.28107 7.35605 7.44674 7.48014 7.79506 7.85391 8.00769 9.01276 9.72295 10.73808 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011145 B = 0.001912 C = 0.001717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2511.627040 B =14641.452346 C =16307.529729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.012 4.012 3 H 0.141 0.859 4 C 0.219 3.781 5 N -0.410 5.410 6 C 0.519 3.481 7 O -0.522 6.522 8 N -0.723 5.723 9 C 0.122 3.878 10 C -0.117 4.117 11 C 0.083 3.917 12 H 0.079 0.921 13 C -0.182 4.182 14 N -0.679 5.679 15 C 0.119 3.881 16 C -0.185 4.185 17 C -0.051 4.051 18 C -0.194 4.194 19 C 0.156 3.844 20 O -0.178 6.178 21 C -0.391 4.391 22 H 0.092 0.908 23 C 0.038 3.962 24 N -0.862 5.862 25 Si 0.941 3.059 26 H -0.267 1.267 27 H -0.276 1.276 28 H -0.276 1.276 29 C -0.235 4.235 30 C -0.066 4.066 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.400 0.600 35 H 0.064 0.936 36 H 0.090 0.910 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.343 0.657 43 H 0.028 0.972 44 H 0.070 0.930 45 H 0.112 0.888 46 H 0.116 0.884 47 H 0.269 0.731 48 H 0.125 0.875 49 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.002 6.291 -4.251 29.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.036 4.036 3 H 0.159 0.841 4 C -0.100 4.100 5 N -0.085 5.085 6 C 0.302 3.698 7 O -0.397 6.397 8 N -0.375 5.375 9 C 0.000 4.000 10 C -0.155 4.155 11 C -0.027 4.027 12 H 0.097 0.903 13 C -0.241 4.241 14 N -0.310 5.310 15 C -0.009 4.009 16 C -0.187 4.187 17 C -0.070 4.070 18 C -0.213 4.213 19 C 0.102 3.898 20 O -0.082 6.082 21 C -0.468 4.468 22 H 0.109 0.891 23 C -0.166 4.166 24 N -0.497 5.497 25 Si 0.766 3.234 26 H -0.191 1.191 27 H -0.202 1.202 28 H -0.201 1.201 29 C -0.255 4.255 30 C -0.085 4.085 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.234 0.766 35 H 0.082 0.918 36 H 0.108 0.892 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.162 0.838 43 H 0.046 0.954 44 H 0.088 0.912 45 H 0.130 0.870 46 H 0.134 0.866 47 H 0.079 0.921 48 H 0.143 0.857 49 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -27.371 4.323 -6.520 28.467 hybrid contribution -0.191 1.538 2.114 2.622 sum -27.562 5.861 -4.405 28.521 Atomic orbital electron populations 1.21800 0.89662 1.04317 1.04359 1.18855 0.98675 1.00315 0.85805 0.84145 1.28071 0.93928 0.94033 0.94002 1.81211 1.07426 1.07702 1.12168 1.19946 0.80795 0.84884 0.84191 1.90835 1.36722 1.25738 1.86428 1.45929 1.53651 1.32337 1.05614 1.21433 1.01350 0.95553 0.81687 1.21770 0.99868 1.00258 0.93611 1.21487 0.88508 0.99811 0.92938 0.90278 1.22495 1.01427 1.01326 0.98842 1.60705 1.06463 1.06434 1.57424 1.20638 0.91473 0.94020 0.94776 1.19100 0.93540 1.06825 0.99193 1.20483 0.92366 0.97486 0.96659 1.20246 0.94283 1.06569 1.00236 1.19410 0.84814 0.92795 0.92764 1.83986 1.14390 1.58532 1.51263 1.21365 0.92089 1.25493 1.07807 0.89054 1.25296 0.95152 0.97907 0.98255 1.70050 1.04933 1.41403 1.33301 0.85650 0.79197 0.79156 0.79418 1.19147 1.20163 1.20147 1.21111 0.93750 1.08150 1.02470 1.20569 0.94023 0.97088 0.96797 0.89911 0.90243 0.91008 0.76554 0.91769 0.89215 0.91049 0.91416 0.92425 0.92320 0.92235 0.83840 0.95418 0.91161 0.87027 0.86598 0.92072 0.85711 0.88028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.27 9.05 37.16 0.34 0.07 16 2 C -0.01 -0.06 3.10 -94.55 -0.29 -0.35 16 3 H 0.14 0.20 8.14 -51.93 -0.42 -0.22 16 4 C 0.22 2.13 13.88 -20.76 -0.29 1.85 16 5 N -0.41 -5.40 18.54 42.15 0.78 -4.62 16 6 C 0.52 4.33 7.14 -10.98 -0.08 4.26 16 7 O -0.52 -7.43 16.03 5.55 0.09 -7.34 16 8 N -0.72 -4.06 5.45 -60.30 -0.33 -4.39 16 9 C 0.12 0.95 5.56 -4.05 -0.02 0.93 16 10 C -0.12 -0.64 5.01 -26.73 -0.13 -0.78 16 11 C 0.08 0.61 2.59 -67.71 -0.18 0.43 16 12 H 0.08 0.60 7.80 -51.93 -0.40 0.20 16 13 C -0.18 -1.15 9.16 37.16 0.34 -0.81 16 14 N -0.68 -6.97 5.69 -107.98 -0.61 -7.59 16 15 C 0.12 1.45 5.61 -4.97 -0.03 1.42 16 16 C -0.19 -3.02 5.40 -104.58 -0.56 -3.58 16 17 C -0.05 -0.92 9.69 -39.61 -0.38 -1.31 16 18 C -0.19 -4.18 9.99 -39.39 -0.39 -4.57 16 19 C 0.16 3.79 6.65 -39.11 -0.26 3.53 16 20 O -0.18 -5.14 9.76 0.03 0.00 -5.14 16 21 C -0.39 -10.97 9.49 30.89 0.29 -10.68 16 22 H 0.09 2.37 5.20 -52.49 -0.27 2.09 16 23 C 0.04 1.05 5.49 -17.52 -0.10 0.96 16 24 N -0.86 -25.48 13.67 55.48 0.76 -24.72 16 25 Si 0.94 20.54 29.55 -169.99 -5.02 15.52 16 26 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 27 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16 28 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16 29 C -0.24 -5.05 9.17 -39.39 -0.36 -5.42 16 30 C -0.07 -1.16 9.69 -39.61 -0.38 -1.54 16 31 H 0.08 -0.05 7.56 -51.93 -0.39 -0.44 16 32 H 0.08 0.08 8.14 -51.93 -0.42 -0.35 16 33 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 34 H 0.40 0.73 7.89 -40.82 -0.32 0.40 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.09 1.00 7.75 -51.93 -0.40 0.60 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.06 0.42 7.45 -51.93 -0.39 0.03 16 40 H 0.06 0.37 8.13 -51.92 -0.42 -0.06 16 41 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 42 H 0.34 3.61 8.46 -39.29 -0.33 3.27 16 43 H 0.03 0.31 7.38 -51.93 -0.38 -0.07 16 44 H 0.07 0.84 8.00 -51.93 -0.42 0.42 16 45 H 0.11 1.79 8.06 -52.49 -0.42 1.36 16 46 H 0.12 2.46 8.06 -52.49 -0.42 2.03 16 47 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 48 H 0.13 2.69 5.64 -52.49 -0.30 2.40 16 49 H 0.10 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 417.41 15.07 6.29 6.29 Total: -1.00 -36.49 417.41 -7.93 -44.42 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -7.39 Total: 3.15 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: -2.49 Total: -15.60 kcal Atomic # 7 Polarization: -41.91 SS G_CDS: 0.60 Total: -41.32 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: 0.09 Total: -12.48 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -36.49 -7.93 -44.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001366450282.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.038 kcal (2) G-P(sol) polarization free energy of solvation -36.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds