Wall clock time and date at job start Wed Apr 1 2020 04:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.47163 * 2 1 4 4 C 1.47207 * 109.46626 * 240.00140 * 2 1 3 5 5 N 2.60803 * 109.46784 * 240.00263 * 2 1 3 6 6 C 1.50696 * 109.47296 * 120.00515 * 2 1 3 7 7 O 1.21284 * 120.00508 * 119.99821 * 6 2 1 8 8 N 1.34783 * 119.99987 * 299.99633 * 6 2 1 9 9 C 1.46496 * 120.00172 * 180.27366 * 8 6 2 10 10 C 1.52996 * 109.47027 * 179.72512 * 9 8 6 11 11 C 1.53008 * 109.47075 * 180.02562 * 10 9 8 12 12 H 1.09001 * 109.46885 * 305.00233 * 11 10 9 13 13 C 1.52999 * 109.47150 * 185.00347 * 11 10 9 14 14 N 1.46898 * 109.46969 * 65.00010 * 11 10 9 15 15 C 1.46907 * 110.99569 * 205.00066 * 14 11 10 16 16 C 1.50703 * 109.46637 * 180.02562 * 15 14 11 17 17 C 1.38301 * 119.92900 * 269.72149 * 16 15 14 18 18 C 1.38102 * 120.06875 * 179.72725 * 17 16 15 19 19 C 1.38880 * 119.92732 * 0.57673 * 18 17 16 20 20 O 1.35753 * 120.06745 * 179.68441 * 19 18 17 21 21 C 1.34834 * 116.99766 * 174.48479 * 20 19 18 22 22 H 1.07998 * 119.99857 * 5.05775 * 21 20 19 23 23 C 1.38654 * 119.99575 * 185.05206 * 21 20 19 24 24 N 1.31552 * 120.00172 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99618 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47234 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.47505 * 120.00212 * 25 23 21 28 28 H 1.48504 * 109.46884 * 239.99898 * 25 23 21 29 29 C 1.38881 * 119.86366 * 359.70057 * 19 18 17 30 30 C 1.38106 * 119.92992 * 0.02562 * 29 19 18 31 31 H 1.09002 * 109.46615 * 299.99525 * 1 2 3 32 32 H 1.08991 * 109.47425 * 59.99635 * 1 2 3 33 33 H 1.09003 * 109.46734 * 179.97438 * 1 2 3 34 34 H 0.97003 * 119.99503 * 0.02562 * 8 6 2 35 35 H 1.08993 * 109.47212 * 299.73167 * 9 8 6 36 36 H 1.09005 * 109.46866 * 59.72687 * 9 8 6 37 37 H 1.09001 * 109.47504 * 300.00108 * 10 9 8 38 38 H 1.08991 * 109.47046 * 60.00431 * 10 9 8 39 39 H 1.08994 * 109.47132 * 180.02562 * 13 11 10 40 40 H 1.09009 * 109.46941 * 299.99447 * 13 11 10 41 41 H 1.08998 * 109.47197 * 59.99260 * 13 11 10 42 42 H 1.00901 * 111.00140 * 81.04684 * 14 11 10 43 43 H 1.08993 * 109.47387 * 300.00130 * 15 14 11 44 44 H 1.09003 * 109.47000 * 60.00709 * 15 14 11 45 45 H 1.07999 * 119.96581 * 359.97438 * 17 16 15 46 46 H 1.07996 * 120.03632 * 180.27715 * 18 17 16 47 47 H 0.97004 * 119.99940 * 179.97438 * 24 23 21 48 48 H 1.07999 * 120.03289 * 179.97438 * 29 19 18 49 49 H 1.07999 * 119.96446 * 180.02562 * 30 29 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0206 -0.6939 -1.2020 5 7 2.3993 -1.2294 -2.1295 6 6 2.0324 -0.7105 1.2304 7 8 2.7297 -1.6966 1.1191 8 7 1.7069 -0.2501 2.4546 9 6 2.2002 -0.9372 3.6506 10 6 1.6948 -0.2128 4.8999 11 6 2.2105 -0.9301 6.1491 12 1 1.9228 -1.9807 6.1096 13 6 1.6051 -0.2820 7.3958 14 7 3.6747 -0.8251 6.2046 15 6 4.2525 -1.9295 6.9822 16 6 5.7525 -1.7880 7.0175 17 6 6.5251 -2.3862 6.0387 18 6 7.8995 -2.2537 6.0650 19 6 8.5064 -1.5289 7.0825 20 8 9.8576 -1.4023 7.1147 21 6 10.3741 -0.5928 8.0612 22 1 9.7268 -0.1450 8.8006 23 6 11.7364 -0.3354 8.0851 24 7 12.5249 -0.8813 7.1847 25 14 12.4520 0.7856 9.3969 26 1 11.3630 1.2680 10.2837 27 1 13.4490 0.0337 10.2005 28 1 13.1130 1.9468 8.7488 29 6 7.7281 -0.9343 8.0671 30 6 6.3538 -1.0657 8.0320 31 1 -0.3632 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.1490 0.5384 2.5436 35 1 1.8374 -1.9650 3.6548 36 1 3.2902 -0.9368 3.6463 37 1 2.0577 0.8150 4.8957 38 1 0.6049 -0.2133 4.9042 39 1 1.9728 -0.7927 8.2857 40 1 1.8929 0.7686 7.4353 41 1 0.5187 -0.3598 7.3546 42 1 3.9594 0.0679 6.5782 43 1 3.8613 -1.9015 7.9992 44 1 3.9876 -2.8790 6.5170 45 1 6.0529 -2.9541 5.2508 46 1 8.5021 -2.7173 5.2980 47 1 13.4779 -0.7009 7.2013 48 1 8.1972 -0.3704 8.8598 49 1 5.7480 -0.6032 8.7972 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001366450282.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:27 Heat of formation + Delta-G solvation = -50.475594 kcal Electronic energy + Delta-G solvation = -28431.043932 eV Core-core repulsion = 24357.319845 eV Total energy + Delta-G solvation = -4073.724088 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.04754 -40.78484 -39.01757 -37.98546 -37.60323 -35.90294 -34.46605 -34.23369 -32.94136 -31.76097 -30.27790 -29.24363 -27.45538 -26.20986 -25.40533 -24.13429 -23.59562 -22.08335 -21.94164 -21.38115 -19.82954 -19.09024 -18.82978 -18.14575 -16.89715 -16.69401 -16.52314 -16.39957 -16.23270 -16.14871 -15.52302 -15.42595 -15.26765 -15.20385 -14.94085 -14.46126 -14.32316 -14.27719 -14.09805 -13.93045 -13.75284 -13.69704 -13.56206 -13.22873 -13.01484 -12.85323 -12.79206 -12.72861 -12.44734 -12.38752 -12.28449 -12.21806 -12.11696 -12.09575 -11.77553 -11.58482 -11.15844 -10.90239 -10.79902 -10.03352 -9.76259 -9.19579 -8.86810 -8.46816 -6.15229 0.61890 0.70060 1.34662 1.43538 1.45562 1.53596 1.53847 1.73739 2.17766 2.38131 2.80350 2.82875 3.12772 3.53794 3.55498 3.75279 3.96908 3.98295 4.06637 4.11776 4.20803 4.23147 4.27809 4.39236 4.51621 4.59067 4.62309 4.67371 4.79741 4.82733 4.86180 4.88671 4.91317 5.01987 5.11902 5.13336 5.16937 5.30849 5.31902 5.33869 5.36422 5.41527 5.54342 5.59868 5.72728 5.84463 6.03618 6.20619 6.30726 6.43348 6.61000 6.62513 6.97768 7.27165 7.80087 8.76964 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011145 B = 0.001912 C = 0.001717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2511.627040 B =14641.452346 C =16307.529729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.004 4.004 3 H 0.186 0.814 4 C 0.240 3.760 5 N -0.483 5.483 6 C 0.516 3.484 7 O -0.591 6.591 8 N -0.701 5.701 9 C 0.126 3.874 10 C -0.105 4.105 11 C 0.083 3.917 12 H 0.077 0.923 13 C -0.176 4.176 14 N -0.689 5.689 15 C 0.124 3.876 16 C -0.154 4.154 17 C -0.050 4.050 18 C -0.210 4.210 19 C 0.113 3.887 20 O -0.236 6.236 21 C -0.412 4.412 22 H 0.104 0.896 23 C -0.027 4.027 24 N -0.923 5.923 25 Si 1.021 2.979 26 H -0.249 1.249 27 H -0.269 1.269 28 H -0.269 1.269 29 C -0.242 4.242 30 C -0.059 4.059 31 H 0.119 0.881 32 H 0.094 0.906 33 H 0.055 0.945 34 H 0.424 0.576 35 H 0.051 0.949 36 H 0.053 0.947 37 H 0.079 0.921 38 H 0.098 0.902 39 H 0.048 0.952 40 H 0.061 0.939 41 H 0.075 0.925 42 H 0.344 0.656 43 H 0.048 0.952 44 H 0.077 0.923 45 H 0.135 0.865 46 H 0.104 0.896 47 H 0.272 0.728 48 H 0.119 0.881 49 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.917 8.886 -2.314 35.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.028 4.028 3 H 0.203 0.797 4 C -0.079 4.079 5 N -0.159 5.159 6 C 0.300 3.700 7 O -0.472 6.472 8 N -0.353 5.353 9 C 0.002 3.998 10 C -0.143 4.143 11 C -0.027 4.027 12 H 0.096 0.904 13 C -0.235 4.235 14 N -0.320 5.320 15 C -0.004 4.004 16 C -0.155 4.155 17 C -0.069 4.069 18 C -0.229 4.229 19 C 0.063 3.937 20 O -0.143 6.143 21 C -0.488 4.488 22 H 0.121 0.879 23 C -0.224 4.224 24 N -0.562 5.562 25 Si 0.840 3.160 26 H -0.172 1.172 27 H -0.194 1.194 28 H -0.194 1.194 29 C -0.261 4.261 30 C -0.078 4.078 31 H 0.137 0.863 32 H 0.113 0.887 33 H 0.074 0.926 34 H 0.262 0.738 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.098 0.902 38 H 0.116 0.884 39 H 0.067 0.933 40 H 0.080 0.920 41 H 0.094 0.906 42 H 0.162 0.838 43 H 0.066 0.934 44 H 0.095 0.905 45 H 0.153 0.847 46 H 0.122 0.878 47 H 0.081 0.919 48 H 0.137 0.863 49 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -32.403 6.957 -4.567 33.454 hybrid contribution 0.926 0.649 1.457 1.845 sum -31.476 7.606 -3.110 32.531 Atomic orbital electron populations 1.21902 0.86702 1.04154 1.06947 1.19236 1.00700 1.01069 0.81777 0.79670 1.29076 0.92094 0.92609 0.94088 1.81213 1.09890 1.09982 1.14813 1.20542 0.79682 0.84049 0.85679 1.90819 1.39990 1.28919 1.87431 1.45723 1.52825 1.32500 1.04277 1.21266 0.99263 0.95766 0.83520 1.21710 1.01548 0.99853 0.91165 1.21572 0.86394 1.00314 0.94419 0.90430 1.22423 1.02389 1.01165 0.97511 1.60632 1.08759 1.05687 1.56970 1.20597 0.88064 0.95266 0.96511 1.19661 0.96168 1.02929 0.96722 1.20805 0.90888 0.97432 0.97746 1.20444 0.95933 1.06755 0.99786 1.19927 0.84076 0.94893 0.94845 1.83951 1.16762 1.60741 1.52844 1.21882 0.92903 1.25778 1.08203 0.87916 1.26652 0.95240 0.99592 1.00924 1.70206 1.05353 1.44293 1.36319 0.84497 0.78555 0.76704 0.76220 1.17180 1.19425 1.19404 1.21241 0.95411 1.07864 1.01575 1.20957 0.92528 0.96481 0.97801 0.86279 0.88705 0.92587 0.73769 0.93093 0.92872 0.90204 0.88351 0.93272 0.91978 0.90560 0.83778 0.93425 0.90476 0.84699 0.87761 0.91910 0.86333 0.83981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.00 9.05 71.98 0.65 0.66 16 2 C 0.00 -0.03 3.10 -13.34 -0.04 -0.07 16 3 H 0.19 -0.31 8.14 -2.39 -0.02 -0.33 16 4 C 0.24 4.58 13.88 89.44 1.24 5.82 16 5 N -0.48 -13.23 18.54 20.01 0.37 -12.86 16 6 C 0.52 7.77 7.14 87.65 0.63 8.40 16 7 O -0.59 -17.15 16.03 -3.04 -0.05 -17.20 16 8 N -0.70 -5.69 5.45 -463.07 -2.52 -8.22 16 9 C 0.13 1.66 5.56 86.38 0.48 2.14 16 10 C -0.10 -0.70 5.01 30.60 0.15 -0.55 16 11 C 0.08 0.87 2.59 44.92 0.12 0.99 16 12 H 0.08 0.88 7.80 -2.39 -0.02 0.86 16 13 C -0.18 -1.40 9.16 71.98 0.66 -0.74 16 14 N -0.69 -11.75 5.69 -495.55 -2.82 -14.57 16 15 C 0.12 2.55 5.61 85.56 0.48 3.03 16 16 C -0.15 -4.62 5.40 -19.83 -0.11 -4.73 16 17 C -0.05 -1.77 9.69 22.25 0.22 -1.56 16 18 C -0.21 -9.44 9.99 22.39 0.22 -9.21 16 19 C 0.11 5.77 6.65 22.58 0.15 5.92 16 20 O -0.24 -14.61 9.76 -22.81 -0.22 -14.83 16 21 C -0.41 -24.32 9.49 67.92 0.64 -23.67 16 22 H 0.10 5.53 5.20 -2.91 -0.02 5.51 16 23 C -0.03 -1.57 5.49 84.83 0.47 -1.10 16 24 N -0.92 -57.89 13.67 21.61 0.30 -57.60 16 25 Si 1.02 43.24 29.55 68.60 2.03 45.26 16 26 H -0.25 -9.59 7.11 99.48 0.71 -8.88 16 27 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 28 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 29 C -0.24 -10.45 9.17 22.39 0.21 -10.24 16 30 C -0.06 -1.94 9.69 22.25 0.22 -1.72 16 31 H 0.12 -0.83 7.56 -2.39 -0.02 -0.85 16 32 H 0.09 -0.20 8.14 -2.39 -0.02 -0.22 16 33 H 0.05 0.22 8.14 -2.39 -0.02 0.20 16 34 H 0.42 -0.57 7.89 -92.71 -0.73 -1.31 16 35 H 0.05 0.82 8.14 -2.39 -0.02 0.81 16 36 H 0.05 1.13 7.75 -2.38 -0.02 1.11 16 37 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.10 0.15 8.14 -2.39 -0.02 0.13 16 39 H 0.05 0.50 7.45 -2.39 -0.02 0.48 16 40 H 0.06 0.48 8.13 -2.38 -0.02 0.46 16 41 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 42 H 0.34 5.90 8.46 -89.69 -0.76 5.14 16 43 H 0.05 0.84 7.38 -2.39 -0.02 0.82 16 44 H 0.08 1.55 8.00 -2.39 -0.02 1.53 16 45 H 0.14 4.13 8.06 -2.91 -0.02 4.11 16 46 H 0.10 4.79 8.06 -2.91 -0.02 4.76 16 47 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 48 H 0.12 5.20 5.64 -2.91 -0.02 5.18 16 49 H 0.14 3.55 8.06 -2.91 -0.02 3.52 16 Total: -1.00 -91.43 417.41 2.95 -88.48 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: -0.51 Total: 18.18 kcal Atomic # 6 Polarization: -33.03 SS G_CDS: 6.38 Total: -26.65 kcal Atomic # 7 Polarization: -88.57 SS G_CDS: -4.68 Total: -93.25 kcal Atomic # 8 Polarization: -31.76 SS G_CDS: -0.27 Total: -32.03 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Total: -91.43 2.95 -88.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001366450282.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.000 kcal (2) G-P(sol) polarization free energy of solvation -91.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds