Wall clock time and date at job start Wed Apr 1 2020 03:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09009 * 109.46984 * 2 1 4 4 N 1.46499 * 109.47276 * 119.99698 * 2 1 3 5 5 C 1.36940 * 120.00372 * 275.00242 * 4 2 1 6 6 H 1.08002 * 119.99465 * 0.02562 * 5 4 2 7 7 C 1.38806 * 119.99990 * 179.97438 * 5 4 2 8 8 N 1.31618 * 120.00063 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99996 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47268 * 60.00154 * 9 7 5 11 11 H 1.48504 * 109.47457 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.47147 * 300.00281 * 9 7 5 13 13 C 1.52997 * 109.47325 * 240.00232 * 2 1 3 14 14 C 1.53041 * 109.46180 * 180.02562 * 13 2 1 15 15 C 1.53191 * 109.31325 * 178.60207 * 14 13 2 16 16 N 1.46922 * 108.76784 * 54.65270 * 15 14 13 17 17 C 1.34775 * 120.63217 * 126.40512 * 16 15 14 18 18 O 1.21359 * 119.99921 * 351.28732 * 17 16 15 19 19 C 1.49356 * 119.99975 * 171.28463 * 17 16 15 20 20 O 1.21378 * 120.00111 * 353.43674 * 19 17 16 21 21 N 1.34779 * 119.99800 * 173.43702 * 19 17 16 22 22 C 1.39719 * 119.99866 * 183.58838 * 21 19 17 23 23 C 1.38928 * 120.07635 * 324.21826 * 22 21 19 24 24 C 1.38104 * 119.92212 * 179.81512 * 23 22 21 25 25 C 1.38290 * 120.07428 * 0.43116 * 24 23 22 26 26 C 1.38298 * 120.15477 * 359.79982 * 25 24 23 27 27 C 1.38098 * 120.07345 * 359.97438 * 26 25 24 28 28 C 1.46928 * 118.73850 * 306.38271 * 16 15 14 29 29 C 1.53041 * 109.46195 * 59.97273 * 13 2 1 30 30 H 1.08999 * 109.47119 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47544 * 59.99953 * 1 2 3 32 32 H 1.09000 * 109.47701 * 299.99756 * 1 2 3 33 33 H 0.97001 * 119.99627 * 95.00128 * 4 2 1 34 34 H 0.97009 * 120.00130 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.46088 * 299.99783 * 13 2 1 36 36 H 1.09000 * 109.49522 * 298.56336 * 14 13 2 37 37 H 1.09003 * 109.49693 * 58.65884 * 14 13 2 38 38 H 1.09004 * 109.59697 * 294.86377 * 15 14 13 39 39 H 1.09004 * 109.70324 * 174.50490 * 15 14 13 40 40 H 0.97000 * 119.99629 * 3.59233 * 21 19 17 41 41 H 1.07999 * 120.03855 * 359.97438 * 23 22 21 42 42 H 1.07999 * 119.96253 * 180.20649 * 24 23 22 43 43 H 1.07998 * 119.91959 * 179.76835 * 25 24 23 44 44 H 1.07993 * 119.95917 * 179.97438 * 26 25 24 45 45 H 1.07994 * 120.03335 * 179.97438 * 27 26 25 46 46 H 1.08998 * 109.58817 * 293.82415 * 28 16 15 47 47 H 1.08994 * 109.70197 * 173.46248 * 28 16 15 48 48 H 1.09007 * 109.49154 * 301.33704 * 29 13 2 49 49 H 1.08996 * 109.49870 * 61.39790 * 29 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1491 -0.0074 2.3758 6 1 1.8918 1.0404 2.4243 7 6 2.6113 -0.6619 3.5093 8 7 2.9244 -1.9389 3.4501 9 14 2.7890 0.2698 5.1185 10 1 1.4665 0.8065 5.5285 11 1 3.2982 -0.6486 6.1687 12 1 3.7443 1.3923 4.9378 13 6 2.0400 -0.7212 -1.2492 14 6 3.5704 -0.7216 -1.2486 15 6 4.0773 -1.4747 -2.4826 16 7 3.4748 -0.8768 -3.6818 17 6 4.2482 -0.4580 -4.7030 18 8 5.4548 -0.4254 -4.5766 19 6 3.6205 -0.0341 -5.9902 20 8 2.4273 -0.1782 -6.1600 21 7 4.3790 0.5085 -6.9633 22 6 3.7812 0.9738 -8.1373 23 6 2.6882 0.3053 -8.6743 24 6 2.0974 0.7702 -9.8329 25 6 2.5983 1.8946 -10.4631 26 6 3.6892 2.5597 -9.9339 27 6 4.2819 2.1030 -8.7732 28 6 2.0129 -0.7447 -3.7469 29 6 1.5292 0.0001 -2.4986 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 0.5138 0.8900 33 1 2.2490 -1.6317 1.1526 34 1 3.2478 -2.3962 4.2422 35 1 1.6766 -1.7488 -1.2491 36 1 3.9344 0.3055 -1.2741 37 1 3.9337 -1.2146 -0.3469 38 1 3.7905 -2.5240 -2.4139 39 1 5.1629 -1.3957 -2.5410 40 1 5.3398 0.5759 -6.8485 41 1 2.2993 -0.5754 -8.1850 42 1 1.2456 0.2529 -10.2491 43 1 2.1367 2.2538 -11.3710 44 1 4.0780 3.4372 -10.4290 45 1 5.1340 2.6226 -8.3608 46 1 1.5577 -1.7345 -3.7813 47 1 1.7340 -0.1830 -4.6384 48 1 0.4394 0.0206 -2.4868 49 1 1.9122 1.0205 -2.5118 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481333420.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:34 Heat of formation + Delta-G solvation = -14.643105 kcal Electronic energy + Delta-G solvation = -30022.821540 eV Core-core repulsion = 25950.651266 eV Total energy + Delta-G solvation = -4072.170274 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.50457 -39.92305 -38.56845 -37.99106 -35.85898 -34.97995 -32.86365 -31.32574 -31.14724 -30.76448 -30.12004 -28.24890 -26.39336 -24.54510 -23.73872 -23.32211 -22.81086 -22.11470 -20.90408 -20.05792 -19.49020 -18.32521 -17.68059 -17.24211 -16.88611 -16.43823 -16.23909 -15.65710 -15.14069 -14.87713 -14.60624 -14.35110 -14.18264 -14.00725 -13.85231 -13.78885 -13.70037 -13.41687 -13.10067 -12.88529 -12.53356 -12.35738 -12.13151 -11.95824 -11.72991 -11.59977 -11.43634 -11.12997 -10.98876 -10.85672 -10.76833 -10.73446 -10.38723 -10.19572 -10.13294 -9.82150 -9.64213 -9.37203 -9.20046 -8.89576 -8.74530 -8.58884 -6.93118 -5.75060 -3.02883 0.67348 1.02733 1.31806 2.01933 2.89005 3.21220 3.44575 3.44895 3.49371 3.49908 3.98157 4.52250 4.58231 4.59812 4.79127 4.93931 5.02599 5.06604 5.07858 5.12730 5.17894 5.25804 5.42934 5.54821 5.60518 5.64770 5.67721 5.77471 5.87846 5.90767 5.93541 5.97601 6.04773 6.10301 6.14947 6.18377 6.19850 6.31794 6.34700 6.48831 6.53764 6.61351 6.68380 6.69628 6.81537 6.96188 7.10270 7.15904 7.40145 7.71208 7.71547 8.43953 9.55012 10.13356 10.48192 11.47520 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.023802 B = 0.002016 C = 0.001968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.075638 B =13883.903042 C =14223.835928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.178 3.822 3 H 0.044 0.956 4 N -0.723 5.723 5 C -0.235 4.235 6 H 0.068 0.932 7 C -0.015 4.015 8 N -0.934 5.934 9 Si 0.905 3.095 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.287 1.287 13 C -0.092 4.092 14 C -0.120 4.120 15 C 0.106 3.894 16 N -0.569 5.569 17 C 0.506 3.494 18 O -0.526 6.526 19 C 0.512 3.488 20 O -0.491 6.491 21 N -0.646 5.646 22 C 0.139 3.861 23 C -0.118 4.118 24 C -0.102 4.102 25 C -0.132 4.132 26 C -0.102 4.102 27 C -0.139 4.139 28 C 0.069 3.931 29 C -0.129 4.129 30 H 0.045 0.955 31 H 0.038 0.962 32 H 0.050 0.950 33 H 0.383 0.617 34 H 0.255 0.745 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.095 0.905 38 H 0.074 0.926 39 H 0.092 0.908 40 H 0.423 0.577 41 H 0.139 0.861 42 H 0.127 0.873 43 H 0.123 0.877 44 H 0.127 0.873 45 H 0.128 0.872 46 H 0.070 0.930 47 H 0.133 0.867 48 H 0.080 0.920 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.473 4.979 -28.685 29.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.068 3.932 3 H 0.062 0.938 4 N -0.364 5.364 5 C -0.366 4.366 6 H 0.086 0.914 7 C -0.210 4.210 8 N -0.582 5.582 9 Si 0.736 3.264 10 H -0.214 1.214 11 H -0.218 1.218 12 H -0.214 1.214 13 C -0.112 4.112 14 C -0.159 4.159 15 C -0.015 4.015 16 N -0.301 5.301 17 C 0.288 3.712 18 O -0.403 6.403 19 C 0.295 3.705 20 O -0.366 6.366 21 N -0.292 5.292 22 C 0.045 3.955 23 C -0.138 4.138 24 C -0.121 4.121 25 C -0.151 4.151 26 C -0.121 4.121 27 C -0.159 4.159 28 C -0.052 4.052 29 C -0.167 4.167 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.217 0.783 34 H 0.064 0.936 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.113 0.887 38 H 0.092 0.908 39 H 0.110 0.890 40 H 0.261 0.739 41 H 0.157 0.843 42 H 0.145 0.855 43 H 0.141 0.859 44 H 0.145 0.855 45 H 0.146 0.854 46 H 0.089 0.911 47 H 0.150 0.850 48 H 0.099 0.901 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.295 4.975 -28.485 28.917 hybrid contribution 0.534 0.181 1.198 1.324 sum 0.829 5.156 -27.287 27.782 Atomic orbital electron populations 1.22493 0.99513 1.00761 0.99836 1.20214 0.91599 0.95308 0.86081 0.93772 1.42405 1.78098 1.10612 1.05276 1.19175 1.36258 0.93764 0.87396 0.91415 1.24709 1.02398 0.95972 0.97960 1.69642 1.51090 1.08599 1.28912 0.86303 0.77717 0.78610 0.83761 1.21398 1.21766 1.21368 1.21423 0.94964 1.00009 0.94757 1.21884 0.95915 1.01063 0.96990 1.21961 0.99475 0.96900 0.83158 1.48079 1.08382 1.57402 1.16255 1.19682 0.86959 0.79930 0.84661 1.90770 1.13730 1.53722 1.82090 1.20514 0.86723 0.77990 0.85253 1.90537 1.14514 1.52238 1.79288 1.43198 1.12201 1.58849 1.14986 1.17770 0.96354 0.94460 0.86900 1.21306 0.96243 1.00538 0.95712 1.21095 0.99582 0.96526 0.94866 1.21207 0.97048 0.96387 1.00454 1.20969 0.95987 0.99748 0.95394 1.20973 1.02272 0.95123 0.97557 1.22893 0.77572 1.02630 1.02090 1.22044 1.01363 0.99472 0.93823 0.93584 0.94290 0.93048 0.78339 0.93552 0.91311 0.91890 0.88697 0.90753 0.88958 0.73856 0.84334 0.85517 0.85851 0.85498 0.85418 0.91143 0.85026 0.90116 0.91838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.93 9.14 37.15 0.34 -2.59 16 2 C 0.18 3.39 2.47 -67.94 -0.17 3.23 16 3 H 0.04 0.89 8.08 -51.92 -0.42 0.47 16 4 N -0.72 -17.40 4.41 -53.43 -0.24 -17.64 16 5 C -0.23 -6.39 9.93 -15.06 -0.15 -6.54 16 6 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 7 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 8 N -0.93 -27.77 13.06 55.49 0.72 -27.05 16 9 Si 0.90 22.37 29.55 -169.99 -5.02 17.34 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 C -0.09 -1.43 1.79 -90.58 -0.16 -1.59 16 14 C -0.12 -1.90 5.22 -26.61 -0.14 -2.04 16 15 C 0.11 1.45 6.44 -3.71 -0.02 1.43 16 16 N -0.57 -7.39 2.97 -173.31 -0.52 -7.91 16 17 C 0.51 6.61 7.73 -11.63 -0.09 6.52 16 18 O -0.53 -7.77 15.92 5.49 0.09 -7.69 16 19 C 0.51 5.86 7.57 -11.63 -0.09 5.77 16 20 O -0.49 -6.05 10.69 5.47 0.06 -5.99 16 21 N -0.65 -6.08 5.32 -10.30 -0.05 -6.14 16 22 C 0.14 1.28 6.28 -83.75 -0.53 0.75 16 23 C -0.12 -1.11 8.68 -39.37 -0.34 -1.45 16 24 C -0.10 -0.78 10.04 -39.61 -0.40 -1.18 16 25 C -0.13 -0.88 10.04 -39.54 -0.40 -1.28 16 26 C -0.10 -0.68 10.04 -39.61 -0.40 -1.07 16 27 C -0.14 -1.05 9.97 -39.38 -0.39 -1.44 16 28 C 0.07 0.83 5.98 -3.71 -0.02 0.81 16 29 C -0.13 -1.66 5.04 -26.61 -0.13 -1.79 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.04 0.57 6.40 -51.93 -0.33 0.24 16 32 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.38 9.78 7.58 -40.82 -0.31 9.47 16 34 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 35 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.09 1.74 7.41 -51.93 -0.38 1.36 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.09 1.30 7.01 -51.93 -0.36 0.94 16 40 H 0.42 3.34 8.30 -40.82 -0.34 3.00 16 41 H 0.14 1.42 6.31 -52.49 -0.33 1.08 16 42 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 43 H 0.12 0.55 8.06 -52.49 -0.42 0.13 16 44 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 45 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 46 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.13 1.59 4.32 -54.78 -0.24 1.35 16 48 H 0.08 0.97 6.36 -51.93 -0.33 0.64 16 49 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 392.23 15.07 5.91 5.91 Total: -1.00 -31.30 392.23 -9.48 -40.78 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: -7.24 Total: 11.36 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: -3.19 Total: -2.99 kcal Atomic # 7 Polarization: -58.65 SS G_CDS: -0.08 Total: -58.73 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: 0.15 Total: -13.67 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.30 -9.48 -40.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481333420.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.133 kcal (2) G-P(sol) polarization free energy of solvation -31.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds