Wall clock time and date at job start Wed Apr 1 2020 03:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09009 * 109.46984 * 2 1 4 4 N 1.46499 * 109.47276 * 119.99698 * 2 1 3 5 5 C 1.36940 * 120.00372 * 275.00242 * 4 2 1 6 6 H 1.08002 * 119.99465 * 0.02562 * 5 4 2 7 7 C 1.38806 * 119.99990 * 179.97438 * 5 4 2 8 8 N 1.31618 * 120.00063 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99996 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47268 * 60.00154 * 9 7 5 11 11 H 1.48504 * 109.47457 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.47147 * 300.00281 * 9 7 5 13 13 C 1.52997 * 109.47325 * 240.00232 * 2 1 3 14 14 C 1.53041 * 109.46180 * 180.02562 * 13 2 1 15 15 C 1.53191 * 109.31325 * 178.60207 * 14 13 2 16 16 N 1.46922 * 108.76784 * 54.65270 * 15 14 13 17 17 C 1.34775 * 120.63217 * 126.40512 * 16 15 14 18 18 O 1.21359 * 119.99921 * 351.28732 * 17 16 15 19 19 C 1.49356 * 119.99975 * 171.28463 * 17 16 15 20 20 O 1.21378 * 120.00111 * 353.43674 * 19 17 16 21 21 N 1.34779 * 119.99800 * 173.43702 * 19 17 16 22 22 C 1.39719 * 119.99866 * 183.58838 * 21 19 17 23 23 C 1.38928 * 120.07635 * 324.21826 * 22 21 19 24 24 C 1.38104 * 119.92212 * 179.81512 * 23 22 21 25 25 C 1.38290 * 120.07428 * 0.43116 * 24 23 22 26 26 C 1.38298 * 120.15477 * 359.79982 * 25 24 23 27 27 C 1.38098 * 120.07345 * 359.97438 * 26 25 24 28 28 C 1.46928 * 118.73850 * 306.38271 * 16 15 14 29 29 C 1.53041 * 109.46195 * 59.97273 * 13 2 1 30 30 H 1.08999 * 109.47119 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47544 * 59.99953 * 1 2 3 32 32 H 1.09000 * 109.47701 * 299.99756 * 1 2 3 33 33 H 0.97001 * 119.99627 * 95.00128 * 4 2 1 34 34 H 0.97009 * 120.00130 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.46088 * 299.99783 * 13 2 1 36 36 H 1.09000 * 109.49522 * 298.56336 * 14 13 2 37 37 H 1.09003 * 109.49693 * 58.65884 * 14 13 2 38 38 H 1.09004 * 109.59697 * 294.86377 * 15 14 13 39 39 H 1.09004 * 109.70324 * 174.50490 * 15 14 13 40 40 H 0.97000 * 119.99629 * 3.59233 * 21 19 17 41 41 H 1.07999 * 120.03855 * 359.97438 * 23 22 21 42 42 H 1.07999 * 119.96253 * 180.20649 * 24 23 22 43 43 H 1.07998 * 119.91959 * 179.76835 * 25 24 23 44 44 H 1.07993 * 119.95917 * 179.97438 * 26 25 24 45 45 H 1.07994 * 120.03335 * 179.97438 * 27 26 25 46 46 H 1.08998 * 109.58817 * 293.82415 * 28 16 15 47 47 H 1.08994 * 109.70197 * 173.46248 * 28 16 15 48 48 H 1.09007 * 109.49154 * 301.33704 * 29 13 2 49 49 H 1.08996 * 109.49870 * 61.39790 * 29 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1491 -0.0074 2.3758 6 1 1.8918 1.0404 2.4243 7 6 2.6113 -0.6619 3.5093 8 7 2.9244 -1.9389 3.4501 9 14 2.7890 0.2698 5.1185 10 1 1.4665 0.8065 5.5285 11 1 3.2982 -0.6486 6.1687 12 1 3.7443 1.3923 4.9378 13 6 2.0400 -0.7212 -1.2492 14 6 3.5704 -0.7216 -1.2486 15 6 4.0773 -1.4747 -2.4826 16 7 3.4748 -0.8768 -3.6818 17 6 4.2482 -0.4580 -4.7030 18 8 5.4548 -0.4254 -4.5766 19 6 3.6205 -0.0341 -5.9902 20 8 2.4273 -0.1782 -6.1600 21 7 4.3790 0.5085 -6.9633 22 6 3.7812 0.9738 -8.1373 23 6 2.6882 0.3053 -8.6743 24 6 2.0974 0.7702 -9.8329 25 6 2.5983 1.8946 -10.4631 26 6 3.6892 2.5597 -9.9339 27 6 4.2819 2.1030 -8.7732 28 6 2.0129 -0.7447 -3.7469 29 6 1.5292 0.0001 -2.4986 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 0.5138 0.8900 33 1 2.2490 -1.6317 1.1526 34 1 3.2478 -2.3962 4.2422 35 1 1.6766 -1.7488 -1.2491 36 1 3.9344 0.3055 -1.2741 37 1 3.9337 -1.2146 -0.3469 38 1 3.7905 -2.5240 -2.4139 39 1 5.1629 -1.3957 -2.5410 40 1 5.3398 0.5759 -6.8485 41 1 2.2993 -0.5754 -8.1850 42 1 1.2456 0.2529 -10.2491 43 1 2.1367 2.2538 -11.3710 44 1 4.0780 3.4372 -10.4290 45 1 5.1340 2.6226 -8.3608 46 1 1.5577 -1.7345 -3.7813 47 1 1.7340 -0.1830 -4.6384 48 1 0.4394 0.0206 -2.4868 49 1 1.9122 1.0205 -2.5118 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481333420.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:33 Heat of formation + Delta-G solvation = -33.470461 kcal Electronic energy + Delta-G solvation = -30023.637956 eV Core-core repulsion = 25950.651266 eV Total energy + Delta-G solvation = -4072.986690 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.40640 -40.80476 -39.46073 -39.10221 -37.14757 -35.95321 -34.58767 -32.50201 -32.24147 -31.83992 -30.77868 -29.92854 -27.49169 -26.00451 -25.15384 -24.20317 -23.71228 -23.01869 -21.95478 -21.29388 -20.74020 -19.35580 -18.91798 -18.49480 -17.93231 -17.32629 -17.03534 -16.80738 -16.45943 -15.93338 -15.71184 -15.52443 -15.42269 -15.18736 -15.08001 -14.87741 -14.56263 -14.35419 -14.23191 -14.08913 -13.78365 -13.58860 -13.50986 -13.09351 -12.89950 -12.79256 -12.64482 -12.38660 -12.30458 -12.26102 -12.20297 -12.11308 -11.86508 -11.50782 -11.46803 -11.35887 -11.28044 -10.87344 -10.29346 -9.86896 -9.84325 -9.23807 -8.94847 -7.90931 -5.17211 -0.10632 0.46743 0.55143 1.11714 1.46840 1.48759 1.54700 1.94290 2.31071 2.57732 2.86890 3.08336 3.42351 3.77337 3.80884 3.85360 3.99380 4.06511 4.09783 4.22582 4.32116 4.33616 4.37197 4.50606 4.54149 4.54977 4.57598 4.61043 4.75376 4.82328 4.90992 4.94139 4.99699 5.07001 5.12376 5.13906 5.16744 5.25185 5.28702 5.34313 5.44021 5.49897 5.54519 5.59241 5.63037 5.67592 5.87725 6.05724 6.13140 6.31815 6.53822 6.74265 7.38092 8.16513 8.39427 9.32030 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.023802 B = 0.002016 C = 0.001968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.075638 B =13883.903042 C =14223.835928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.172 3.828 3 H 0.033 0.967 4 N -0.732 5.732 5 C -0.232 4.232 6 H 0.070 0.930 7 C -0.076 4.076 8 N -0.967 5.967 9 Si 0.966 3.034 10 H -0.281 1.281 11 H -0.297 1.297 12 H -0.281 1.281 13 C -0.082 4.082 14 C -0.112 4.112 15 C 0.114 3.886 16 N -0.571 5.571 17 C 0.506 3.494 18 O -0.547 6.547 19 C 0.515 3.485 20 O -0.501 6.501 21 N -0.634 5.634 22 C 0.116 3.884 23 C -0.136 4.136 24 C -0.110 4.110 25 C -0.131 4.131 26 C -0.104 4.104 27 C -0.142 4.142 28 C 0.075 3.925 29 C -0.120 4.120 30 H 0.044 0.956 31 H 0.075 0.925 32 H 0.029 0.971 33 H 0.373 0.627 34 H 0.249 0.751 35 H 0.070 0.930 36 H 0.050 0.950 37 H 0.064 0.936 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.429 0.571 41 H 0.125 0.875 42 H 0.142 0.858 43 H 0.149 0.851 44 H 0.153 0.847 45 H 0.144 0.856 46 H 0.082 0.918 47 H 0.138 0.862 48 H 0.098 0.902 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.338 6.459 -31.130 31.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.064 3.936 3 H 0.052 0.948 4 N -0.372 5.372 5 C -0.364 4.364 6 H 0.087 0.913 7 C -0.269 4.269 8 N -0.618 5.618 9 Si 0.796 3.204 10 H -0.207 1.207 11 H -0.223 1.223 12 H -0.208 1.208 13 C -0.101 4.101 14 C -0.151 4.151 15 C -0.007 4.007 16 N -0.303 5.303 17 C 0.288 3.712 18 O -0.426 6.426 19 C 0.298 3.702 20 O -0.377 6.377 21 N -0.281 5.281 22 C 0.023 3.977 23 C -0.156 4.156 24 C -0.128 4.128 25 C -0.149 4.149 26 C -0.122 4.122 27 C -0.162 4.162 28 C -0.046 4.046 29 C -0.158 4.158 30 H 0.063 0.937 31 H 0.094 0.906 32 H 0.049 0.951 33 H 0.205 0.795 34 H 0.058 0.942 35 H 0.089 0.911 36 H 0.068 0.932 37 H 0.083 0.917 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.268 0.732 41 H 0.142 0.858 42 H 0.160 0.840 43 H 0.166 0.834 44 H 0.171 0.829 45 H 0.161 0.839 46 H 0.100 0.900 47 H 0.155 0.845 48 H 0.116 0.884 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.535 6.500 -30.983 31.661 hybrid contribution 0.782 -0.203 1.810 1.982 sum 0.247 6.297 -29.172 29.845 Atomic orbital electron populations 1.22349 0.97765 1.00901 1.00609 1.20447 0.92691 0.94654 0.85809 0.94843 1.42569 1.78340 1.10240 1.06058 1.19510 1.34459 0.93925 0.88506 0.91252 1.25444 1.03424 0.96879 1.01108 1.69792 1.52840 1.09969 1.29241 0.85323 0.77780 0.77348 0.79990 1.20699 1.22330 1.20770 1.21301 0.94486 0.99975 0.94344 1.21719 0.96312 1.00170 0.96853 1.21788 0.99133 0.97230 0.82576 1.48119 1.08908 1.57285 1.15973 1.19984 0.86700 0.79318 0.85198 1.90756 1.14659 1.54559 1.82585 1.20135 0.86621 0.78474 0.84969 1.90524 1.14768 1.53079 1.79370 1.43105 1.12373 1.57914 1.14671 1.17975 0.97069 0.95602 0.87088 1.21331 0.96918 1.00637 0.96744 1.21341 1.00030 0.97077 0.94398 1.21566 0.96764 0.95625 1.00965 1.21350 0.95650 1.00322 0.94905 1.21231 1.02644 0.94529 0.97760 1.22937 0.76788 1.03275 1.01584 1.21987 1.02314 0.98928 0.92567 0.93723 0.90622 0.95136 0.79486 0.94239 0.91131 0.93152 0.91743 0.89483 0.89565 0.73162 0.85756 0.84029 0.83374 0.82913 0.83862 0.89951 0.84474 0.88351 0.92154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.31 9.14 71.98 0.66 -4.65 16 2 C 0.17 6.52 2.47 44.99 0.11 6.63 16 3 H 0.03 1.34 8.08 -2.38 -0.02 1.32 16 4 N -0.73 -35.84 4.41 -322.95 -1.42 -37.26 16 5 C -0.23 -12.78 9.93 84.03 0.83 -11.94 16 6 H 0.07 3.73 7.83 -2.91 -0.02 3.70 16 7 C -0.08 -4.38 5.50 84.86 0.47 -3.92 16 8 N -0.97 -58.86 13.06 21.65 0.28 -58.58 16 9 Si 0.97 46.55 29.55 68.60 2.03 48.58 16 10 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 11 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 12 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 13 C -0.08 -2.48 1.79 -10.77 -0.02 -2.50 16 14 C -0.11 -3.60 5.22 30.67 0.16 -3.44 16 15 C 0.11 3.11 6.44 86.36 0.56 3.66 16 16 N -0.57 -14.35 2.97 -820.59 -2.44 -16.79 16 17 C 0.51 12.91 7.73 87.24 0.67 13.59 16 18 O -0.55 -16.08 15.92 -3.27 -0.05 -16.13 16 19 C 0.52 11.43 7.57 87.24 0.66 12.09 16 20 O -0.50 -11.88 10.69 -3.33 -0.04 -11.91 16 21 N -0.63 -11.48 5.32 -304.83 -1.62 -13.10 16 22 C 0.12 2.01 6.28 38.22 0.24 2.25 16 23 C -0.14 -2.46 8.68 22.40 0.19 -2.26 16 24 C -0.11 -1.50 10.04 22.25 0.22 -1.27 16 25 C -0.13 -1.38 10.04 22.30 0.22 -1.16 16 26 C -0.10 -1.08 10.04 22.25 0.22 -0.85 16 27 C -0.14 -1.85 9.97 22.40 0.22 -1.63 16 28 C 0.07 1.65 5.98 86.36 0.52 2.17 16 29 C -0.12 -2.85 5.04 30.67 0.15 -2.70 16 30 H 0.04 1.51 8.14 -2.39 -0.02 1.50 16 31 H 0.08 2.00 6.40 -2.38 -0.02 1.98 16 32 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.37 19.59 7.58 -92.71 -0.70 18.88 16 34 H 0.25 14.82 8.31 -92.70 -0.77 14.05 16 35 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.06 2.47 7.41 -2.39 -0.02 2.45 16 38 H 0.09 2.16 8.14 -2.38 -0.02 2.14 16 39 H 0.09 2.46 7.01 -2.39 -0.02 2.45 16 40 H 0.43 6.50 8.30 -92.71 -0.77 5.73 16 41 H 0.12 2.54 6.31 -2.91 -0.02 2.52 16 42 H 0.14 1.38 8.06 -2.91 -0.02 1.35 16 43 H 0.15 0.79 8.06 -2.91 -0.02 0.77 16 44 H 0.15 0.75 8.06 -2.91 -0.02 0.73 16 45 H 0.14 1.33 8.06 -2.91 -0.02 1.31 16 46 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 47 H 0.14 3.05 4.32 -47.55 -0.21 2.84 16 48 H 0.10 2.03 6.36 -2.38 -0.02 2.02 16 49 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -68.05 392.23 2.16 -65.89 By element: Atomic # 1 Polarization: 35.92 SS G_CDS: -0.68 Total: 35.24 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: 6.10 Total: 4.07 kcal Atomic # 7 Polarization: -120.53 SS G_CDS: -5.20 Total: -125.73 kcal Atomic # 8 Polarization: -27.96 SS G_CDS: -0.09 Total: -28.05 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -68.05 2.16 -65.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481333420.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.420 kcal (2) G-P(sol) polarization free energy of solvation -68.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds