Wall clock time and date at job start Wed Apr 1 2020 04:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47328 * 2 1 4 4 N 1.46500 * 109.46979 * 119.99650 * 2 1 3 5 5 C 1.36936 * 120.00193 * 274.99832 * 4 2 1 6 6 H 1.08002 * 119.99599 * 0.02562 * 5 4 2 7 7 C 1.38809 * 119.99999 * 179.97438 * 5 4 2 8 8 N 1.31619 * 119.99883 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 120.00219 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.47682 * 89.99368 * 9 7 5 11 11 H 1.48500 * 109.47228 * 209.99743 * 9 7 5 12 12 H 1.48502 * 109.47231 * 329.99484 * 9 7 5 13 13 C 1.53004 * 109.47321 * 239.99879 * 2 1 3 14 14 H 1.09006 * 109.49534 * 300.06445 * 13 2 1 15 15 C 1.53033 * 109.49853 * 60.15962 * 13 2 1 16 16 C 1.53044 * 109.54019 * 181.31843 * 15 13 2 17 17 C 1.53188 * 109.31090 * 298.63839 * 16 15 13 18 18 N 1.46925 * 108.77908 * 54.63239 * 17 16 15 19 19 C 1.34773 * 120.63182 * 126.40980 * 18 17 16 20 20 O 1.21553 * 119.99950 * 176.21071 * 19 18 17 21 21 C 1.47859 * 120.00008 * 356.21533 * 19 18 17 22 22 C 1.39707 * 120.07556 * 50.78915 * 21 19 18 23 23 C 1.38051 * 120.14687 * 179.97438 * 22 21 19 24 24 C 1.38099 * 120.29497 * 0.02562 * 23 22 21 25 25 C 1.39664 * 120.14513 * 0.02562 * 24 23 22 26 26 C 1.47866 * 120.07290 * 180.02562 * 25 24 23 27 27 N 1.34781 * 119.99996 * 0.02562 * 26 25 24 28 28 O 1.21551 * 119.99978 * 180.02562 * 26 25 24 29 29 C 1.39293 * 120.06934 * 230.52035 * 21 19 18 30 30 C 1.46930 * 118.73818 * 306.39216 * 18 17 16 31 31 H 1.09003 * 109.47080 * 60.00157 * 1 2 3 32 32 H 1.09003 * 109.47328 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47461 * 300.00446 * 1 2 3 34 34 H 0.97004 * 119.99663 * 95.00286 * 4 2 1 35 35 H 0.97008 * 120.00030 * 180.02562 * 8 7 5 36 36 H 1.09001 * 109.46092 * 61.30007 * 15 13 2 37 37 H 1.09003 * 109.46361 * 301.34284 * 15 13 2 38 38 H 1.08997 * 109.49542 * 178.68563 * 16 15 13 39 39 H 1.09000 * 109.49152 * 58.58698 * 16 15 13 40 40 H 1.08998 * 109.58503 * 174.42454 * 17 16 15 41 41 H 1.09004 * 109.58599 * 294.84689 * 17 16 15 42 42 H 1.08002 * 119.92445 * 0.02562 * 22 21 19 43 43 H 1.07997 * 119.85532 * 180.02562 * 23 22 21 44 44 H 1.08003 * 119.92702 * 180.02562 * 24 23 22 45 45 H 0.97000 * 120.00071 * 359.97438 * 27 26 25 46 46 H 0.96996 * 119.99569 * 180.02562 * 27 26 25 47 47 H 1.07993 * 120.14921 * 0.02562 * 29 21 19 48 48 H 1.09001 * 109.58649 * 173.39334 * 30 18 17 49 49 H 1.08997 * 109.58542 * 293.67869 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1491 -0.0074 2.3758 6 1 1.8919 1.0404 2.4243 7 6 2.6113 -0.6618 3.5093 8 7 2.7365 -0.0053 4.6431 9 14 3.0554 -2.4743 3.4255 10 1 4.4883 -2.6166 3.0622 11 1 2.8153 -3.1044 4.7486 12 1 2.2158 -3.1428 2.3992 13 6 2.0401 -0.7213 -1.2492 14 1 1.6760 -1.7487 -1.2502 15 6 1.5336 0.0019 -2.4992 16 6 2.0159 -0.7377 -3.7492 17 6 3.5476 -0.7382 -3.7781 18 7 4.0442 -1.3006 -2.5149 19 6 4.9167 -2.3278 -2.5166 20 8 5.3732 -2.7392 -1.4679 21 6 5.3188 -2.9542 -3.7942 22 6 5.7695 -2.1605 -4.8518 23 6 6.1458 -2.7439 -6.0451 24 6 6.0789 -4.1143 -6.2022 25 6 5.6291 -4.9193 -5.1533 26 6 5.5588 -6.3865 -5.3230 27 7 5.9294 -6.9484 -6.4907 28 8 5.1667 -7.0859 -4.4095 29 6 5.2542 -4.3376 -3.9440 30 6 3.5720 -0.7217 -1.2498 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3634 0.5139 0.8899 34 1 2.2490 -1.6317 1.1527 35 1 3.0598 -0.4626 5.4352 36 1 1.9183 1.0217 -2.5096 37 1 0.4439 0.0252 -2.4889 38 1 1.6354 -0.2354 -4.6386 39 1 1.6521 -1.7649 -3.7272 40 1 3.8971 -1.3473 -4.6118 41 1 3.9113 0.2831 -3.8914 42 1 5.8246 -1.0882 -4.7353 43 1 6.4939 -2.1258 -6.8595 44 1 6.3751 -4.5644 -7.1382 45 1 6.2420 -6.3903 -7.2199 46 1 5.8829 -7.9108 -6.6021 47 1 4.9102 -4.9560 -3.1282 48 1 3.9375 -1.3199 -0.4152 49 1 3.9397 0.3001 -1.1557 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482470814.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:25 Heat of formation + Delta-G solvation = -31.915025 kcal Electronic energy + Delta-G solvation = -30561.553243 eV Core-core repulsion = 26488.634002 eV Total energy + Delta-G solvation = -4072.919241 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.95103 -39.99496 -38.49609 -37.63823 -35.63422 -34.32023 -33.09718 -31.83444 -31.66302 -31.55021 -30.08532 -28.53672 -25.85553 -24.64279 -24.42556 -23.10395 -22.80153 -21.55673 -20.80755 -19.82381 -19.47579 -18.42400 -17.57776 -17.24085 -16.95161 -16.51031 -16.03487 -15.52822 -15.12089 -14.98468 -14.80025 -14.64048 -14.43924 -14.19076 -14.02189 -13.92392 -13.38977 -13.11177 -12.99792 -12.96816 -12.68056 -12.46959 -12.36841 -12.17652 -11.83763 -11.55916 -11.19502 -11.12522 -10.93657 -10.77851 -10.65550 -10.52364 -10.34674 -10.17519 -10.08539 -9.99531 -9.78018 -9.50074 -9.47005 -9.34257 -8.87311 -8.58638 -7.20264 -5.70253 -3.05535 0.26007 0.71121 2.27622 2.64108 2.91697 3.06952 3.40958 3.49455 3.53392 3.59043 4.13289 4.24623 4.33938 4.53409 4.61022 4.68608 4.71864 4.82199 4.87372 4.94388 5.09636 5.14554 5.23607 5.34766 5.42925 5.51888 5.57389 5.64544 5.70206 5.74277 5.75543 5.81854 5.85542 5.91424 6.03542 6.05696 6.14565 6.22636 6.30828 6.33675 6.35934 6.41798 6.53756 6.61145 6.83717 6.84360 7.03509 7.36104 7.80132 8.05256 8.11125 8.48911 9.27494 10.00829 10.19954 11.47971 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012440 B = 0.002983 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.236427 B = 9383.803615 C =10648.971872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.186 3.814 3 H 0.056 0.944 4 N -0.749 5.749 5 C -0.241 4.241 6 H 0.090 0.910 7 C 0.007 3.993 8 N -0.935 5.935 9 Si 0.879 3.121 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.278 1.278 13 C -0.107 4.107 14 H 0.069 0.931 15 C -0.114 4.114 16 C -0.134 4.134 17 C 0.096 3.904 18 N -0.603 5.603 19 C 0.553 3.447 20 O -0.521 6.521 21 C -0.123 4.123 22 C -0.064 4.064 23 C -0.130 4.130 24 C -0.071 4.071 25 C -0.143 4.143 26 C 0.564 3.436 27 N -0.852 5.852 28 O -0.532 6.532 29 C -0.011 4.011 30 C 0.121 3.879 31 H 0.041 0.959 32 H 0.044 0.956 33 H 0.057 0.943 34 H 0.361 0.639 35 H 0.259 0.741 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.087 0.913 41 H 0.072 0.928 42 H 0.137 0.863 43 H 0.137 0.863 44 H 0.130 0.870 45 H 0.400 0.600 46 H 0.406 0.594 47 H 0.145 0.855 48 H 0.101 0.899 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.918 -4.713 -32.784 33.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.076 3.924 3 H 0.074 0.926 4 N -0.392 5.392 5 C -0.371 4.371 6 H 0.108 0.892 7 C -0.189 4.189 8 N -0.583 5.583 9 Si 0.710 3.290 10 H -0.207 1.207 11 H -0.219 1.219 12 H -0.204 1.204 13 C -0.127 4.127 14 H 0.088 0.912 15 C -0.152 4.152 16 C -0.172 4.172 17 C -0.026 4.026 18 N -0.336 5.336 19 C 0.340 3.660 20 O -0.397 6.397 21 C -0.126 4.126 22 C -0.083 4.083 23 C -0.148 4.148 24 C -0.090 4.090 25 C -0.147 4.147 26 C 0.349 3.651 27 N -0.416 5.416 28 O -0.408 6.408 29 C -0.031 4.031 30 C 0.000 4.000 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.194 0.806 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.105 0.895 41 H 0.090 0.910 42 H 0.155 0.845 43 H 0.155 0.845 44 H 0.148 0.852 45 H 0.230 0.770 46 H 0.237 0.763 47 H 0.162 0.838 48 H 0.119 0.881 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.904 -5.045 -31.304 32.085 hybrid contribution 0.418 -1.407 -0.410 1.524 sum 5.322 -6.452 -31.715 32.799 Atomic orbital electron populations 1.22451 0.98786 1.00844 1.00423 1.20143 0.92022 0.95539 0.84720 0.92558 1.42841 1.79752 1.09437 1.07174 1.19023 1.36954 0.95417 0.85701 0.89234 1.24630 1.01341 0.97366 0.95558 1.69702 1.52725 1.35585 1.00262 0.86631 0.78967 0.86790 0.76647 1.20726 1.21851 1.20388 1.21821 0.94567 1.00607 0.95748 0.91207 1.21619 1.01248 0.99111 0.93243 1.21926 0.94763 1.01642 0.98903 1.22052 0.95132 0.99198 0.86250 1.48123 1.43881 1.33372 1.08189 1.18275 0.79477 0.79794 0.88448 1.90877 1.53909 1.62373 1.32537 1.19961 1.03751 0.94057 0.94846 1.21583 0.94584 1.00335 0.91816 1.21042 1.01263 0.94619 0.97910 1.21412 0.95977 0.94011 0.97583 1.19791 1.06151 0.92986 0.95733 1.18225 0.76684 0.87760 0.82391 1.43725 1.69946 1.12128 1.15809 1.90873 1.45858 1.63657 1.40433 1.21302 0.92306 0.93104 0.96352 1.21750 0.93940 0.99329 0.84991 0.93960 0.93721 0.92369 0.80588 0.93132 0.91580 0.90988 0.90810 0.91576 0.89471 0.91007 0.84520 0.84500 0.85218 0.77031 0.76260 0.83754 0.88088 0.90967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.82 9.14 37.16 0.34 -2.48 16 2 C 0.19 3.44 2.47 -67.93 -0.17 3.27 16 3 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 4 N -0.75 -17.81 4.32 -53.42 -0.23 -18.04 16 5 C -0.24 -6.84 10.41 -15.06 -0.16 -6.99 16 6 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 7 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 8 N -0.93 -30.01 13.97 55.49 0.78 -29.23 16 9 Si 0.88 23.55 27.74 -169.99 -4.71 18.83 16 10 H -0.28 -7.67 7.11 56.52 0.40 -7.27 16 11 H -0.29 -7.87 7.11 56.52 0.40 -7.47 16 12 H -0.28 -7.13 6.52 56.52 0.37 -6.76 16 13 C -0.11 -1.63 1.97 -90.50 -0.18 -1.81 16 14 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 15 C -0.11 -1.27 4.86 -26.69 -0.13 -1.40 16 16 C -0.13 -1.21 6.08 -26.61 -0.16 -1.37 16 17 C 0.10 0.88 5.37 -3.71 -0.02 0.86 16 18 N -0.60 -8.14 2.97 -173.88 -0.52 -8.66 16 19 C 0.55 8.53 7.23 -12.32 -0.09 8.44 16 20 O -0.52 -10.64 16.47 5.32 0.09 -10.55 16 21 C -0.12 -1.44 5.00 -105.02 -0.52 -1.96 16 22 C -0.06 -0.50 7.36 -39.10 -0.29 -0.79 16 23 C -0.13 -0.71 10.02 -39.70 -0.40 -1.11 16 24 C -0.07 -0.40 9.54 -39.10 -0.37 -0.78 16 25 C -0.14 -1.34 5.87 -105.01 -0.62 -1.96 16 26 C 0.56 5.66 8.05 -12.32 -0.10 5.57 16 27 N -0.85 -4.28 8.82 30.53 0.27 -4.01 16 28 O -0.53 -7.92 17.18 5.32 0.09 -7.83 16 29 C -0.01 -0.13 9.28 -38.78 -0.36 -0.49 16 30 C 0.12 1.97 5.46 -3.71 -0.02 1.95 16 31 H 0.04 0.58 6.41 -51.93 -0.33 0.25 16 32 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.36 8.80 5.47 -40.82 -0.22 8.58 16 35 H 0.26 7.96 8.31 -40.82 -0.34 7.62 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.77 6.37 -51.93 -0.33 0.44 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.09 0.65 4.56 -51.93 -0.24 0.41 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.14 0.85 7.07 -52.49 -0.37 0.48 16 43 H 0.14 0.34 8.06 -52.49 -0.42 -0.09 16 44 H 0.13 0.24 6.39 -52.48 -0.34 -0.09 16 45 H 0.40 0.66 6.85 -40.82 -0.28 0.38 16 46 H 0.41 1.62 8.93 -40.82 -0.36 1.26 16 47 H 0.14 2.08 7.64 -52.49 -0.40 1.68 16 48 H 0.10 2.06 6.53 -51.93 -0.34 1.72 16 49 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 389.66 15.07 5.87 5.87 Total: -1.00 -38.60 389.66 -8.73 -47.33 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -7.03 Total: 7.24 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: -3.34 Total: -0.96 kcal Atomic # 7 Polarization: -60.24 SS G_CDS: 0.30 Total: -59.94 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: 0.18 Total: -18.38 kcal Atomic # 14 Polarization: 23.55 SS G_CDS: -4.71 Total: 18.83 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -38.60 -8.73 -47.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482470814.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.416 kcal (2) G-P(sol) polarization free energy of solvation -38.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds