Wall clock time and date at job start Wed Apr 1 2020 04:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47328 * 2 1 4 4 N 1.46500 * 109.46979 * 119.99650 * 2 1 3 5 5 C 1.36936 * 120.00193 * 274.99832 * 4 2 1 6 6 H 1.08002 * 119.99599 * 0.02562 * 5 4 2 7 7 C 1.38809 * 119.99999 * 179.97438 * 5 4 2 8 8 N 1.31619 * 119.99883 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 120.00219 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.47682 * 89.99368 * 9 7 5 11 11 H 1.48500 * 109.47228 * 209.99743 * 9 7 5 12 12 H 1.48502 * 109.47231 * 329.99484 * 9 7 5 13 13 C 1.53004 * 109.47321 * 239.99879 * 2 1 3 14 14 H 1.09006 * 109.49534 * 300.06445 * 13 2 1 15 15 C 1.53033 * 109.49853 * 60.15962 * 13 2 1 16 16 C 1.53044 * 109.54019 * 181.31843 * 15 13 2 17 17 C 1.53188 * 109.31090 * 298.63839 * 16 15 13 18 18 N 1.46925 * 108.77908 * 54.63239 * 17 16 15 19 19 C 1.34773 * 120.63182 * 126.40980 * 18 17 16 20 20 O 1.21553 * 119.99950 * 176.21071 * 19 18 17 21 21 C 1.47859 * 120.00008 * 356.21533 * 19 18 17 22 22 C 1.39707 * 120.07556 * 50.78915 * 21 19 18 23 23 C 1.38051 * 120.14687 * 179.97438 * 22 21 19 24 24 C 1.38099 * 120.29497 * 0.02562 * 23 22 21 25 25 C 1.39664 * 120.14513 * 0.02562 * 24 23 22 26 26 C 1.47866 * 120.07290 * 180.02562 * 25 24 23 27 27 N 1.34781 * 119.99996 * 0.02562 * 26 25 24 28 28 O 1.21551 * 119.99978 * 180.02562 * 26 25 24 29 29 C 1.39293 * 120.06934 * 230.52035 * 21 19 18 30 30 C 1.46930 * 118.73818 * 306.39216 * 18 17 16 31 31 H 1.09003 * 109.47080 * 60.00157 * 1 2 3 32 32 H 1.09003 * 109.47328 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47461 * 300.00446 * 1 2 3 34 34 H 0.97004 * 119.99663 * 95.00286 * 4 2 1 35 35 H 0.97008 * 120.00030 * 180.02562 * 8 7 5 36 36 H 1.09001 * 109.46092 * 61.30007 * 15 13 2 37 37 H 1.09003 * 109.46361 * 301.34284 * 15 13 2 38 38 H 1.08997 * 109.49542 * 178.68563 * 16 15 13 39 39 H 1.09000 * 109.49152 * 58.58698 * 16 15 13 40 40 H 1.08998 * 109.58503 * 174.42454 * 17 16 15 41 41 H 1.09004 * 109.58599 * 294.84689 * 17 16 15 42 42 H 1.08002 * 119.92445 * 0.02562 * 22 21 19 43 43 H 1.07997 * 119.85532 * 180.02562 * 23 22 21 44 44 H 1.08003 * 119.92702 * 180.02562 * 24 23 22 45 45 H 0.97000 * 120.00071 * 359.97438 * 27 26 25 46 46 H 0.96996 * 119.99569 * 180.02562 * 27 26 25 47 47 H 1.07993 * 120.14921 * 0.02562 * 29 21 19 48 48 H 1.09001 * 109.58649 * 173.39334 * 30 18 17 49 49 H 1.08997 * 109.58542 * 293.67869 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1491 -0.0074 2.3758 6 1 1.8919 1.0404 2.4243 7 6 2.6113 -0.6618 3.5093 8 7 2.7365 -0.0053 4.6431 9 14 3.0554 -2.4743 3.4255 10 1 4.4883 -2.6166 3.0622 11 1 2.8153 -3.1044 4.7486 12 1 2.2158 -3.1428 2.3992 13 6 2.0401 -0.7213 -1.2492 14 1 1.6760 -1.7487 -1.2502 15 6 1.5336 0.0019 -2.4992 16 6 2.0159 -0.7377 -3.7492 17 6 3.5476 -0.7382 -3.7781 18 7 4.0442 -1.3006 -2.5149 19 6 4.9167 -2.3278 -2.5166 20 8 5.3732 -2.7392 -1.4679 21 6 5.3188 -2.9542 -3.7942 22 6 5.7695 -2.1605 -4.8518 23 6 6.1458 -2.7439 -6.0451 24 6 6.0789 -4.1143 -6.2022 25 6 5.6291 -4.9193 -5.1533 26 6 5.5588 -6.3865 -5.3230 27 7 5.9294 -6.9484 -6.4907 28 8 5.1667 -7.0859 -4.4095 29 6 5.2542 -4.3376 -3.9440 30 6 3.5720 -0.7217 -1.2498 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3634 0.5139 0.8899 34 1 2.2490 -1.6317 1.1527 35 1 3.0598 -0.4626 5.4352 36 1 1.9183 1.0217 -2.5096 37 1 0.4439 0.0252 -2.4889 38 1 1.6354 -0.2354 -4.6386 39 1 1.6521 -1.7649 -3.7272 40 1 3.8971 -1.3473 -4.6118 41 1 3.9113 0.2831 -3.8914 42 1 5.8246 -1.0882 -4.7353 43 1 6.4939 -2.1258 -6.8595 44 1 6.3751 -4.5644 -7.1382 45 1 6.2420 -6.3903 -7.2199 46 1 5.8829 -7.9108 -6.6021 47 1 4.9102 -4.9560 -3.1282 48 1 3.9375 -1.3199 -0.4152 49 1 3.9397 0.3001 -1.1557 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482470814.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:24 Heat of formation + Delta-G solvation = -62.447638 kcal Electronic energy + Delta-G solvation = -30562.877237 eV Core-core repulsion = 26488.634002 eV Total energy + Delta-G solvation = -4074.243234 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.86505 -40.88953 -39.48267 -38.72564 -37.13494 -35.06330 -34.70091 -33.35259 -32.49588 -32.20412 -31.61030 -29.99435 -26.88909 -25.92286 -25.34433 -24.51315 -23.80516 -22.45915 -21.83407 -21.29494 -20.38449 -19.62677 -19.13142 -18.07358 -17.85730 -17.16461 -17.06526 -16.78428 -16.52787 -16.06020 -15.92873 -15.77122 -15.41923 -15.31558 -15.00749 -14.85161 -14.75272 -14.41337 -14.35918 -14.23754 -13.94845 -13.74138 -13.42310 -13.28379 -12.98544 -12.94543 -12.58841 -12.57187 -12.37967 -12.23266 -11.96178 -11.87344 -11.71840 -11.46669 -11.35293 -11.29118 -11.07183 -10.95994 -10.81195 -10.13514 -10.04147 -9.70811 -9.32465 -8.06819 -5.36314 -0.37872 -0.00575 1.27791 1.34798 1.35679 1.41998 1.69625 1.94038 2.41253 2.43787 2.71460 3.26370 3.30978 3.50125 3.72031 3.77303 3.80466 3.89050 3.96502 4.03229 4.08527 4.10328 4.26094 4.33218 4.39129 4.56035 4.56896 4.61566 4.73194 4.79205 4.81740 4.88618 4.88754 4.99399 5.02006 5.10068 5.15469 5.20125 5.21572 5.24605 5.33800 5.45357 5.50045 5.59898 5.69038 5.76441 5.81230 6.19413 6.29440 6.36338 6.98200 7.04957 7.22614 7.83599 7.99463 9.15094 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012440 B = 0.002983 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.236427 B = 9383.803615 C =10648.971872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.176 3.824 3 H 0.054 0.946 4 N -0.756 5.756 5 C -0.213 4.213 6 H 0.068 0.932 7 C -0.056 4.056 8 N -0.980 5.980 9 Si 0.936 3.064 10 H -0.294 1.294 11 H -0.291 1.291 12 H -0.265 1.265 13 C -0.094 4.094 14 H 0.053 0.947 15 C -0.109 4.109 16 C -0.128 4.128 17 C 0.089 3.911 18 N -0.597 5.597 19 C 0.544 3.456 20 O -0.593 6.593 21 C -0.142 4.142 22 C -0.057 4.057 23 C -0.110 4.110 24 C -0.047 4.047 25 C -0.154 4.154 26 C 0.558 3.442 27 N -0.822 5.822 28 O -0.596 6.596 29 C -0.041 4.041 30 C 0.123 3.877 31 H 0.085 0.915 32 H 0.041 0.959 33 H 0.032 0.968 34 H 0.357 0.643 35 H 0.256 0.744 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.115 0.885 39 H 0.053 0.947 40 H 0.111 0.889 41 H 0.099 0.901 42 H 0.159 0.841 43 H 0.188 0.812 44 H 0.180 0.820 45 H 0.421 0.579 46 H 0.414 0.586 47 H 0.098 0.902 48 H 0.048 0.952 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.111 -3.612 -39.620 40.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.069 3.931 3 H 0.072 0.928 4 N -0.398 5.398 5 C -0.344 4.344 6 H 0.086 0.914 7 C -0.248 4.248 8 N -0.632 5.632 9 Si 0.766 3.234 10 H -0.221 1.221 11 H -0.217 1.217 12 H -0.190 1.190 13 C -0.115 4.115 14 H 0.072 0.928 15 C -0.147 4.147 16 C -0.166 4.166 17 C -0.032 4.032 18 N -0.328 5.328 19 C 0.333 3.667 20 O -0.474 6.474 21 C -0.145 4.145 22 C -0.076 4.076 23 C -0.127 4.127 24 C -0.065 4.065 25 C -0.157 4.157 26 C 0.344 3.656 27 N -0.387 5.387 28 O -0.478 6.478 29 C -0.062 4.062 30 C 0.001 3.999 31 H 0.104 0.896 32 H 0.060 0.940 33 H 0.052 0.948 34 H 0.189 0.811 35 H 0.065 0.935 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.133 0.867 39 H 0.072 0.928 40 H 0.129 0.871 41 H 0.117 0.883 42 H 0.177 0.823 43 H 0.205 0.795 44 H 0.197 0.803 45 H 0.254 0.746 46 H 0.246 0.754 47 H 0.116 0.884 48 H 0.067 0.933 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.064 -3.918 -38.304 38.836 hybrid contribution 0.380 -1.664 1.522 2.287 sum 5.444 -5.582 -36.782 37.599 Atomic orbital electron populations 1.22308 0.96902 1.00934 1.01333 1.20479 0.93225 0.95299 0.84143 0.92763 1.42980 1.79965 1.09301 1.07581 1.19053 1.33795 0.94550 0.86993 0.91375 1.25223 1.03057 1.00810 0.95675 1.69826 1.55310 1.37040 1.00985 0.85700 0.77965 0.83046 0.76694 1.22101 1.21736 1.19022 1.21675 0.93537 0.99874 0.96368 0.92844 1.21627 1.01937 0.99458 0.91659 1.21931 0.94375 1.01115 0.99197 1.22487 0.95448 1.00793 0.84426 1.48209 1.42971 1.32706 1.08886 1.19048 0.78892 0.79565 0.89182 1.90824 1.56693 1.64468 1.35408 1.19647 1.06646 0.93867 0.94333 1.21876 0.93310 1.01093 0.91296 1.21605 0.98572 0.94762 0.97747 1.21958 0.92774 0.94066 0.97719 1.19796 1.07106 0.92978 0.95809 1.18491 0.76181 0.88076 0.82817 1.43485 1.67677 1.12888 1.14616 1.90846 1.49116 1.64971 1.42881 1.21056 0.94935 0.93298 0.96877 1.21474 0.94783 0.98431 0.85237 0.89619 0.94029 0.94842 0.81079 0.93475 0.90072 0.89769 0.86710 0.92814 0.87148 0.88254 0.82299 0.79478 0.80263 0.74568 0.75376 0.88421 0.93296 0.90616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.13 9.14 71.98 0.66 -4.47 16 2 C 0.18 6.55 2.47 44.99 0.11 6.66 16 3 H 0.05 2.05 8.08 -2.39 -0.02 2.03 16 4 N -0.76 -37.20 4.32 -322.93 -1.40 -38.59 16 5 C -0.21 -12.53 10.41 84.03 0.87 -11.65 16 6 H 0.07 4.27 8.06 -2.91 -0.02 4.24 16 7 C -0.06 -3.51 5.50 84.86 0.47 -3.04 16 8 N -0.98 -65.54 13.97 21.65 0.30 -65.24 16 9 Si 0.94 51.35 27.74 68.60 1.90 53.26 16 10 H -0.29 -16.60 7.11 99.48 0.71 -15.89 16 11 H -0.29 -15.78 7.11 99.48 0.71 -15.07 16 12 H -0.26 -13.74 6.52 99.48 0.65 -13.09 16 13 C -0.09 -2.84 1.97 -10.72 -0.02 -2.86 16 14 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 15 C -0.11 -2.06 4.86 30.62 0.15 -1.91 16 16 C -0.13 -1.78 6.08 30.67 0.19 -1.60 16 17 C 0.09 1.30 5.37 86.36 0.46 1.76 16 18 N -0.60 -16.12 2.97 -822.30 -2.44 -18.57 16 19 C 0.54 17.81 7.23 86.79 0.63 18.44 16 20 O -0.59 -26.92 16.47 -3.88 -0.06 -26.98 16 21 C -0.14 -3.31 5.00 -20.12 -0.10 -3.41 16 22 C -0.06 -0.67 7.36 22.58 0.17 -0.51 16 23 C -0.11 -0.50 10.02 22.19 0.22 -0.27 16 24 C -0.05 -0.28 9.54 22.58 0.22 -0.07 16 25 C -0.15 -2.68 5.87 -20.12 -0.12 -2.79 16 26 C 0.56 10.99 8.05 86.79 0.70 11.68 16 27 N -0.82 -6.03 8.82 -175.58 -1.55 -7.58 16 28 O -0.60 -19.09 17.18 -3.88 -0.07 -19.15 16 29 C -0.04 -1.08 9.28 22.79 0.21 -0.87 16 30 C 0.12 4.16 5.46 86.36 0.47 4.63 16 31 H 0.09 2.09 6.41 -2.39 -0.02 2.07 16 32 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.36 18.16 5.47 -92.71 -0.51 17.65 16 35 H 0.26 16.47 8.31 -92.70 -0.77 15.69 16 36 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.08 1.43 6.37 -2.39 -0.02 1.42 16 38 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.11 1.14 4.56 -2.39 -0.01 1.13 16 41 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.16 1.16 7.07 -2.91 -0.02 1.14 16 43 H 0.19 -0.81 8.06 -2.91 -0.02 -0.84 16 44 H 0.18 -0.71 6.39 -2.91 -0.02 -0.73 16 45 H 0.42 -0.64 6.85 -92.71 -0.64 -1.28 16 46 H 0.41 2.39 8.93 -92.71 -0.83 1.56 16 47 H 0.10 3.36 7.64 -2.91 -0.02 3.33 16 48 H 0.05 2.17 6.53 -2.39 -0.02 2.15 16 49 H 0.08 2.43 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -97.79 389.66 0.95 -96.84 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -1.02 Total: 16.29 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: 5.28 Total: 9.72 kcal Atomic # 7 Polarization: -124.89 SS G_CDS: -5.09 Total: -129.97 kcal Atomic # 8 Polarization: -46.01 SS G_CDS: -0.13 Total: -46.14 kcal Atomic # 14 Polarization: 51.35 SS G_CDS: 1.90 Total: 53.26 kcal Total: -97.79 0.95 -96.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482470814.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.393 kcal (2) G-P(sol) polarization free energy of solvation -97.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds