Wall clock time and date at job start Wed Apr 1 2020 04:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47033 * 2 1 4 4 N 1.46492 * 109.47271 * 239.99831 * 2 1 3 5 5 C 1.36943 * 120.00333 * 84.99855 * 4 2 1 6 6 H 1.08003 * 119.99342 * 0.02562 * 5 4 2 7 7 C 1.38803 * 120.00425 * 179.97438 * 5 4 2 8 8 N 1.31620 * 119.99949 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00039 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47268 * 60.00240 * 9 7 5 11 11 H 1.48506 * 109.47194 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47334 * 299.99964 * 9 7 5 13 13 C 1.52998 * 109.47050 * 119.99911 * 2 1 3 14 14 H 1.08997 * 109.52497 * 60.08108 * 13 2 1 15 15 C 1.53042 * 109.49896 * 300.00206 * 13 2 1 16 16 C 1.53034 * 109.54146 * 178.68489 * 15 13 2 17 17 C 1.53191 * 109.31500 * 61.36075 * 16 15 13 18 18 N 1.46921 * 108.77742 * 305.37023 * 17 16 15 19 19 C 1.34779 * 120.63161 * 233.58522 * 18 17 16 20 20 O 1.21553 * 119.99796 * 183.81447 * 19 18 17 21 21 C 1.47856 * 119.99667 * 3.80971 * 19 18 17 22 22 C 1.39707 * 120.07505 * 309.21710 * 21 19 18 23 23 C 1.38060 * 120.14314 * 179.97438 * 22 21 19 24 24 C 1.38099 * 120.29612 * 0.03889 * 23 22 21 25 25 C 1.39659 * 120.14848 * 359.96149 * 24 23 22 26 26 C 1.47860 * 120.07466 * 180.29573 * 25 24 23 27 27 N 1.34768 * 119.99825 * 359.72578 * 26 25 24 28 28 O 1.21554 * 119.99716 * 179.72496 * 26 25 24 29 29 C 1.39294 * 120.07341 * 129.20046 * 21 19 18 30 30 C 1.46930 * 118.73901 * 53.85796 * 18 17 16 31 31 H 1.09000 * 109.46648 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47268 * 299.99880 * 1 2 3 33 33 H 1.09002 * 109.46836 * 60.00401 * 1 2 3 34 34 H 0.97005 * 120.00225 * 265.00056 * 4 2 1 35 35 H 0.97003 * 119.99930 * 180.02562 * 8 7 5 36 36 H 1.08995 * 109.46267 * 58.66036 * 15 13 2 37 37 H 1.09005 * 109.45881 * 298.70553 * 15 13 2 38 38 H 1.09006 * 109.49692 * 301.41132 * 16 15 13 39 39 H 1.08998 * 109.52662 * 181.33482 * 16 15 13 40 40 H 1.09003 * 109.59097 * 185.57878 * 17 16 15 41 41 H 1.09003 * 109.70092 * 65.22589 * 17 16 15 42 42 H 1.07995 * 119.92918 * 359.97438 * 22 21 19 43 43 H 1.07995 * 119.84706 * 180.02562 * 23 22 21 44 44 H 1.08003 * 119.92270 * 180.02562 * 24 23 22 45 45 H 0.96999 * 120.00845 * 359.97438 * 27 26 25 46 46 H 0.97000 * 119.99792 * 180.02562 * 27 26 25 47 47 H 1.08007 * 120.14479 * 0.03654 * 29 21 19 48 48 H 1.08996 * 109.58992 * 65.92491 * 30 18 17 49 49 H 1.09000 * 109.58678 * 186.35737 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1492 -0.0075 -2.3758 6 1 1.8927 1.0405 -2.4241 7 6 2.6124 -0.6617 -3.5089 8 7 2.9255 -1.9388 -3.4498 9 14 2.7915 0.2703 -5.1179 10 1 3.7466 1.3927 -4.9361 11 1 3.3016 -0.6479 -6.1677 12 1 1.4693 0.8070 -5.5289 13 6 2.0400 -0.7212 1.2492 14 1 1.6784 -1.7494 1.2494 15 6 1.5302 -0.0003 2.4992 16 6 2.0125 -0.7398 3.7492 17 6 3.5441 -0.7369 3.7802 18 7 4.0438 -1.2970 2.5172 19 6 4.9188 -2.3222 2.5192 20 8 5.3779 -2.7313 1.4707 21 6 5.3200 -2.9491 3.7968 22 6 5.7670 -2.1554 4.8561 23 6 6.1415 -2.7393 6.0498 24 6 6.0780 -4.1100 6.2050 25 6 5.6331 -4.9151 5.1541 26 6 5.5595 -6.3820 5.3243 27 7 5.9273 -6.9441 6.4927 28 8 5.1673 -7.0809 4.4104 29 6 5.2530 -4.3323 3.9469 30 6 3.5763 -0.7143 1.2520 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 2.2491 -1.6318 -1.1525 35 1 3.2496 -2.3959 -4.2416 36 1 0.4405 0.0205 2.4875 37 1 1.9125 1.0205 2.5110 38 1 1.6511 -1.7679 3.7258 39 1 1.6296 -0.2398 4.6388 40 1 3.8940 -1.3459 4.6138 41 1 3.9074 0.2843 3.8962 42 1 5.8196 -1.0829 4.7410 43 1 6.4859 -2.1212 6.8657 44 1 6.3721 -4.5604 7.1416 45 1 6.2406 -6.3864 7.2219 46 1 5.8794 -7.9064 6.6042 47 1 4.9084 -4.9504 3.1310 48 1 3.9399 0.3095 1.1648 49 1 3.9472 -1.3085 0.4170 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482470823.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:34 Heat of formation + Delta-G solvation = -34.938877 kcal Electronic energy + Delta-G solvation = -30429.974394 eV Core-core repulsion = 26356.924029 eV Total energy + Delta-G solvation = -4073.050365 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.84474 -39.88657 -38.38175 -37.49810 -35.44399 -34.24595 -33.01336 -31.74027 -31.57081 -31.46282 -29.68838 -28.14562 -25.72099 -24.55904 -24.36895 -23.25313 -22.71690 -21.52003 -20.80343 -19.60804 -19.35966 -18.31594 -17.28722 -17.05174 -16.80450 -16.42630 -15.90673 -15.41870 -15.04298 -14.85777 -14.78255 -14.53378 -14.32399 -14.10237 -13.92461 -13.66569 -13.46852 -13.04586 -12.99731 -12.79954 -12.54931 -12.44702 -12.18887 -11.98485 -11.74224 -11.30973 -11.07745 -10.97319 -10.80844 -10.67730 -10.57985 -10.44404 -10.25632 -10.13787 -10.10533 -9.89723 -9.68508 -9.50668 -9.38527 -9.24757 -8.83869 -8.45143 -6.87171 -5.66056 -2.95749 0.34271 0.79910 2.36564 2.76005 3.02888 3.15852 3.49797 3.50044 3.53860 3.55766 4.23234 4.32181 4.41627 4.61439 4.64630 4.71853 4.81720 4.91545 5.01142 5.03128 5.20703 5.26060 5.36009 5.45419 5.51534 5.64792 5.69918 5.78386 5.81204 5.83262 5.86040 5.93386 5.96690 6.03883 6.14173 6.22666 6.24937 6.30824 6.41217 6.46160 6.51298 6.54292 6.74378 6.76835 6.90780 6.95480 7.14377 7.50364 7.77372 7.87503 8.25614 8.51334 9.62224 10.20123 10.54342 11.56001 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013380 B = 0.002662 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.116219 B =10517.364502 C =11568.486547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.180 3.820 3 H 0.047 0.953 4 N -0.724 5.724 5 C -0.240 4.240 6 H 0.068 0.932 7 C -0.012 4.012 8 N -0.929 5.929 9 Si 0.904 3.096 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.287 1.287 13 C -0.103 4.103 14 H 0.070 0.930 15 C -0.115 4.115 16 C -0.134 4.134 17 C 0.097 3.903 18 N -0.603 5.603 19 C 0.552 3.448 20 O -0.516 6.516 21 C -0.121 4.121 22 C -0.065 4.065 23 C -0.131 4.131 24 C -0.072 4.072 25 C -0.143 4.143 26 C 0.563 3.437 27 N -0.852 5.852 28 O -0.531 6.531 29 C -0.011 4.011 30 C 0.123 3.877 31 H 0.045 0.955 32 H 0.038 0.962 33 H 0.052 0.948 34 H 0.384 0.616 35 H 0.256 0.744 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.086 0.914 41 H 0.069 0.931 42 H 0.136 0.864 43 H 0.136 0.864 44 H 0.129 0.871 45 H 0.400 0.600 46 H 0.406 0.594 47 H 0.146 0.854 48 H 0.066 0.934 49 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.595 -0.721 29.754 30.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.070 3.930 3 H 0.065 0.935 4 N -0.366 5.366 5 C -0.371 4.371 6 H 0.086 0.914 7 C -0.208 4.208 8 N -0.576 5.576 9 Si 0.735 3.265 10 H -0.214 1.214 11 H -0.218 1.218 12 H -0.214 1.214 13 C -0.123 4.123 14 H 0.089 0.911 15 C -0.153 4.153 16 C -0.172 4.172 17 C -0.026 4.026 18 N -0.336 5.336 19 C 0.338 3.662 20 O -0.391 6.391 21 C -0.125 4.125 22 C -0.084 4.084 23 C -0.149 4.149 24 C -0.091 4.091 25 C -0.147 4.147 26 C 0.349 3.651 27 N -0.417 5.417 28 O -0.407 6.407 29 C -0.030 4.030 30 C 0.002 3.998 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.218 0.782 35 H 0.065 0.935 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.104 0.896 41 H 0.088 0.912 42 H 0.154 0.846 43 H 0.154 0.846 44 H 0.147 0.853 45 H 0.229 0.771 46 H 0.237 0.763 47 H 0.163 0.837 48 H 0.085 0.915 49 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 4.593 -1.128 28.306 28.699 hybrid contribution 0.248 0.104 -0.404 0.485 sum 4.840 -1.024 27.902 28.337 Atomic orbital electron populations 1.22486 0.99346 1.00807 0.99840 1.20165 0.91814 0.95224 0.85800 0.93544 1.42449 1.78083 1.10764 1.05268 1.19133 1.36890 0.93726 0.87374 0.91373 1.24737 1.02179 0.95924 0.97965 1.69658 1.50455 1.08591 1.28933 0.86319 0.77635 0.78618 0.83884 1.21357 1.21770 1.21418 1.21847 0.94540 1.00576 0.95350 0.91121 1.21630 1.01096 0.99011 0.93537 1.21919 0.94806 1.01657 0.98815 1.22023 0.95067 0.99085 0.86424 1.48125 1.43835 1.33504 1.08145 1.18262 0.79613 0.79895 0.88399 1.90901 1.53637 1.62156 1.32402 1.19996 1.03522 0.94065 0.94879 1.21577 0.94703 1.00299 0.91833 1.21030 1.01376 0.94609 0.97901 1.21395 0.96173 0.93999 0.97537 1.19787 1.06144 0.92960 0.95766 1.18227 0.76697 0.87775 0.82383 1.43722 1.70040 1.12116 1.15775 1.90877 1.45762 1.63664 1.40409 1.21327 0.92187 0.93145 0.96377 1.21846 0.93918 0.98945 0.85107 0.93615 0.94316 0.92893 0.78168 0.93455 0.91172 0.91858 0.91550 0.91002 0.89582 0.91229 0.84599 0.84594 0.85287 0.77067 0.76296 0.83654 0.91536 0.87370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.94 9.14 37.16 0.34 -2.60 16 2 C 0.18 3.51 2.47 -67.93 -0.17 3.34 16 3 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 4 N -0.72 -18.24 4.52 -53.43 -0.24 -18.48 16 5 C -0.24 -6.72 9.93 -15.06 -0.15 -6.87 16 6 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 7 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 8 N -0.93 -29.09 13.06 55.49 0.72 -28.36 16 9 Si 0.90 22.99 29.55 -169.99 -5.02 17.97 16 10 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 11 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 12 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 13 C -0.10 -1.67 1.99 -90.27 -0.18 -1.85 16 14 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 15 C -0.11 -1.38 4.85 -26.69 -0.13 -1.51 16 16 C -0.13 -1.32 6.08 -26.62 -0.16 -1.48 16 17 C 0.10 0.96 5.37 -3.71 -0.02 0.94 16 18 N -0.60 -8.70 2.97 -173.61 -0.51 -9.21 16 19 C 0.55 9.01 7.23 -12.32 -0.09 8.92 16 20 O -0.52 -11.11 16.47 5.32 0.09 -11.02 16 21 C -0.12 -1.51 5.00 -105.02 -0.52 -2.03 16 22 C -0.07 -0.55 7.36 -39.10 -0.29 -0.84 16 23 C -0.13 -0.79 10.02 -39.70 -0.40 -1.19 16 24 C -0.07 -0.45 9.54 -39.10 -0.37 -0.82 16 25 C -0.14 -1.42 5.87 -105.02 -0.62 -2.04 16 26 C 0.56 5.96 8.05 -12.33 -0.10 5.87 16 27 N -0.85 -4.66 8.82 30.53 0.27 -4.40 16 28 O -0.53 -8.21 17.18 5.32 0.09 -8.11 16 29 C -0.01 -0.14 9.28 -38.78 -0.36 -0.50 16 30 C 0.12 2.13 5.49 -3.48 -0.02 2.11 16 31 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.04 0.56 6.40 -51.93 -0.33 0.23 16 33 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.38 10.59 7.64 -40.82 -0.31 10.28 16 35 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 36 H 0.07 0.82 6.36 -51.93 -0.33 0.49 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.09 0.70 4.56 -51.93 -0.24 0.47 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.14 0.93 7.07 -52.49 -0.37 0.56 16 43 H 0.14 0.40 8.06 -52.49 -0.42 -0.02 16 44 H 0.13 0.31 6.39 -52.48 -0.34 -0.03 16 45 H 0.40 0.84 6.85 -40.82 -0.28 0.56 16 46 H 0.41 1.79 8.93 -40.82 -0.36 1.42 16 47 H 0.15 2.22 7.65 -52.48 -0.40 1.81 16 48 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 49 H 0.11 2.40 6.56 -51.93 -0.34 2.06 16 LS Contribution 392.85 15.07 5.92 5.92 Total: -1.00 -37.60 392.85 -9.09 -46.69 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: -7.07 Total: 10.01 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: -3.33 Total: -1.00 kcal Atomic # 7 Polarization: -60.69 SS G_CDS: 0.24 Total: -60.45 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: 0.18 Total: -19.14 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -5.02 Total: 17.97 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -37.60 -9.09 -46.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482470823.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.756 kcal (2) G-P(sol) polarization free energy of solvation -37.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds