Wall clock time and date at job start Wed Apr 1 2020 04:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47033 * 2 1 4 4 N 1.46492 * 109.47271 * 239.99831 * 2 1 3 5 5 C 1.36943 * 120.00333 * 84.99855 * 4 2 1 6 6 H 1.08003 * 119.99342 * 0.02562 * 5 4 2 7 7 C 1.38803 * 120.00425 * 179.97438 * 5 4 2 8 8 N 1.31620 * 119.99949 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00039 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47268 * 60.00240 * 9 7 5 11 11 H 1.48506 * 109.47194 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47334 * 299.99964 * 9 7 5 13 13 C 1.52998 * 109.47050 * 119.99911 * 2 1 3 14 14 H 1.08997 * 109.52497 * 60.08108 * 13 2 1 15 15 C 1.53042 * 109.49896 * 300.00206 * 13 2 1 16 16 C 1.53034 * 109.54146 * 178.68489 * 15 13 2 17 17 C 1.53191 * 109.31500 * 61.36075 * 16 15 13 18 18 N 1.46921 * 108.77742 * 305.37023 * 17 16 15 19 19 C 1.34779 * 120.63161 * 233.58522 * 18 17 16 20 20 O 1.21553 * 119.99796 * 183.81447 * 19 18 17 21 21 C 1.47856 * 119.99667 * 3.80971 * 19 18 17 22 22 C 1.39707 * 120.07505 * 309.21710 * 21 19 18 23 23 C 1.38060 * 120.14314 * 179.97438 * 22 21 19 24 24 C 1.38099 * 120.29612 * 0.03889 * 23 22 21 25 25 C 1.39659 * 120.14848 * 359.96149 * 24 23 22 26 26 C 1.47860 * 120.07466 * 180.29573 * 25 24 23 27 27 N 1.34768 * 119.99825 * 359.72578 * 26 25 24 28 28 O 1.21554 * 119.99716 * 179.72496 * 26 25 24 29 29 C 1.39294 * 120.07341 * 129.20046 * 21 19 18 30 30 C 1.46930 * 118.73901 * 53.85796 * 18 17 16 31 31 H 1.09000 * 109.46648 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47268 * 299.99880 * 1 2 3 33 33 H 1.09002 * 109.46836 * 60.00401 * 1 2 3 34 34 H 0.97005 * 120.00225 * 265.00056 * 4 2 1 35 35 H 0.97003 * 119.99930 * 180.02562 * 8 7 5 36 36 H 1.08995 * 109.46267 * 58.66036 * 15 13 2 37 37 H 1.09005 * 109.45881 * 298.70553 * 15 13 2 38 38 H 1.09006 * 109.49692 * 301.41132 * 16 15 13 39 39 H 1.08998 * 109.52662 * 181.33482 * 16 15 13 40 40 H 1.09003 * 109.59097 * 185.57878 * 17 16 15 41 41 H 1.09003 * 109.70092 * 65.22589 * 17 16 15 42 42 H 1.07995 * 119.92918 * 359.97438 * 22 21 19 43 43 H 1.07995 * 119.84706 * 180.02562 * 23 22 21 44 44 H 1.08003 * 119.92270 * 180.02562 * 24 23 22 45 45 H 0.96999 * 120.00845 * 359.97438 * 27 26 25 46 46 H 0.97000 * 119.99792 * 180.02562 * 27 26 25 47 47 H 1.08007 * 120.14479 * 0.03654 * 29 21 19 48 48 H 1.08996 * 109.58992 * 65.92491 * 30 18 17 49 49 H 1.09000 * 109.58678 * 186.35737 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1492 -0.0075 -2.3758 6 1 1.8927 1.0405 -2.4241 7 6 2.6124 -0.6617 -3.5089 8 7 2.9255 -1.9388 -3.4498 9 14 2.7915 0.2703 -5.1179 10 1 3.7466 1.3927 -4.9361 11 1 3.3016 -0.6479 -6.1677 12 1 1.4693 0.8070 -5.5289 13 6 2.0400 -0.7212 1.2492 14 1 1.6784 -1.7494 1.2494 15 6 1.5302 -0.0003 2.4992 16 6 2.0125 -0.7398 3.7492 17 6 3.5441 -0.7369 3.7802 18 7 4.0438 -1.2970 2.5172 19 6 4.9188 -2.3222 2.5192 20 8 5.3779 -2.7313 1.4707 21 6 5.3200 -2.9491 3.7968 22 6 5.7670 -2.1554 4.8561 23 6 6.1415 -2.7393 6.0498 24 6 6.0780 -4.1100 6.2050 25 6 5.6331 -4.9151 5.1541 26 6 5.5595 -6.3820 5.3243 27 7 5.9273 -6.9441 6.4927 28 8 5.1673 -7.0809 4.4104 29 6 5.2530 -4.3323 3.9469 30 6 3.5763 -0.7143 1.2520 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 2.2491 -1.6318 -1.1525 35 1 3.2496 -2.3959 -4.2416 36 1 0.4405 0.0205 2.4875 37 1 1.9125 1.0205 2.5110 38 1 1.6511 -1.7679 3.7258 39 1 1.6296 -0.2398 4.6388 40 1 3.8940 -1.3459 4.6138 41 1 3.9074 0.2843 3.8962 42 1 5.8196 -1.0829 4.7410 43 1 6.4859 -2.1212 6.8657 44 1 6.3721 -4.5604 7.1416 45 1 6.2406 -6.3864 7.2219 46 1 5.8794 -7.9064 6.6042 47 1 4.9084 -4.9504 3.1310 48 1 3.9399 0.3095 1.1648 49 1 3.9472 -1.3085 0.4170 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482470823.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:33 Heat of formation + Delta-G solvation = -64.718716 kcal Electronic energy + Delta-G solvation = -30431.265745 eV Core-core repulsion = 26356.924029 eV Total energy + Delta-G solvation = -4074.341716 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.83071 -40.86060 -39.41610 -38.68625 -37.00064 -35.04405 -34.66161 -33.19066 -32.45458 -32.18603 -31.21182 -29.77126 -26.85696 -26.03825 -25.33460 -24.64884 -23.78383 -22.48616 -21.82089 -21.05549 -20.36853 -19.23536 -19.05035 -18.05112 -17.82637 -17.15117 -17.02519 -16.75485 -16.48643 -15.91439 -15.87670 -15.64521 -15.38754 -15.34892 -15.15069 -14.81905 -14.74735 -14.34319 -14.17534 -14.03922 -13.89227 -13.58687 -13.34668 -13.07368 -12.94286 -12.75947 -12.57000 -12.52655 -12.38554 -12.19451 -12.01849 -11.82892 -11.69092 -11.42771 -11.32958 -11.21507 -11.00240 -10.89185 -10.79557 -10.11613 -10.02337 -9.66719 -9.00118 -7.92127 -5.21322 -0.36105 0.01261 1.43102 1.45297 1.47512 1.53492 1.72040 1.97751 2.45336 2.55829 2.73279 3.34061 3.41005 3.70172 3.75763 3.81443 3.84951 3.92979 3.99871 4.08609 4.11551 4.18117 4.29731 4.35031 4.42068 4.57929 4.59962 4.63261 4.76899 4.82947 4.85628 4.90990 4.92801 5.02450 5.05089 5.11785 5.16816 5.22167 5.22889 5.27799 5.37526 5.48310 5.49838 5.55236 5.63349 5.70992 5.82967 6.28248 6.33584 6.38239 7.03258 7.24552 7.33007 8.11404 8.33069 9.31450 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013380 B = 0.002662 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.116219 B =10517.364502 C =11568.486547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.172 3.828 3 H 0.052 0.948 4 N -0.739 5.739 5 C -0.232 4.232 6 H 0.080 0.920 7 C -0.084 4.084 8 N -0.975 5.975 9 Si 0.973 3.027 10 H -0.276 1.276 11 H -0.301 1.301 12 H -0.274 1.274 13 C -0.090 4.090 14 H 0.043 0.957 15 C -0.108 4.108 16 C -0.129 4.129 17 C 0.089 3.911 18 N -0.597 5.597 19 C 0.542 3.458 20 O -0.592 6.592 21 C -0.141 4.141 22 C -0.057 4.057 23 C -0.109 4.109 24 C -0.047 4.047 25 C -0.153 4.153 26 C 0.558 3.442 27 N -0.821 5.821 28 O -0.597 6.597 29 C -0.043 4.043 30 C 0.129 3.871 31 H 0.032 0.968 32 H 0.083 0.917 33 H 0.034 0.966 34 H 0.366 0.634 35 H 0.247 0.753 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.050 0.950 39 H 0.116 0.884 40 H 0.110 0.890 41 H 0.100 0.900 42 H 0.160 0.840 43 H 0.190 0.810 44 H 0.181 0.819 45 H 0.421 0.579 46 H 0.414 0.586 47 H 0.095 0.905 48 H 0.073 0.927 49 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.755 2.535 35.780 36.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.064 3.936 3 H 0.070 0.930 4 N -0.378 5.378 5 C -0.364 4.364 6 H 0.098 0.902 7 C -0.276 4.276 8 N -0.626 5.626 9 Si 0.802 3.198 10 H -0.203 1.203 11 H -0.228 1.228 12 H -0.200 1.200 13 C -0.110 4.110 14 H 0.062 0.938 15 C -0.146 4.146 16 C -0.167 4.167 17 C -0.031 4.031 18 N -0.328 5.328 19 C 0.331 3.669 20 O -0.473 6.473 21 C -0.144 4.144 22 C -0.076 4.076 23 C -0.126 4.126 24 C -0.065 4.065 25 C -0.156 4.156 26 C 0.344 3.656 27 N -0.386 5.386 28 O -0.478 6.478 29 C -0.063 4.063 30 C 0.007 3.993 31 H 0.051 0.949 32 H 0.102 0.898 33 H 0.054 0.946 34 H 0.196 0.804 35 H 0.056 0.944 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.069 0.931 39 H 0.134 0.866 40 H 0.128 0.872 41 H 0.118 0.882 42 H 0.177 0.823 43 H 0.207 0.793 44 H 0.199 0.801 45 H 0.255 0.745 46 H 0.246 0.754 47 H 0.113 0.887 48 H 0.092 0.908 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.717 2.210 34.482 34.873 hybrid contribution 0.211 -0.887 -2.085 2.275 sum 4.928 1.324 32.397 32.797 Atomic orbital electron populations 1.22326 0.97422 1.00415 1.01149 1.20491 0.92998 0.95107 0.84993 0.93024 1.42720 1.78396 1.10095 1.06639 1.19599 1.34431 0.94164 0.88201 0.90199 1.25621 1.03335 0.96816 1.01787 1.69870 1.52861 1.10587 1.29290 0.85215 0.78064 0.77205 0.79331 1.20253 1.22790 1.20041 1.21694 0.93467 0.99380 0.96506 0.93842 1.21626 1.01756 0.99476 0.91736 1.21933 0.94485 1.00987 0.99251 1.22479 0.95332 1.00838 0.84461 1.48217 1.42887 1.32840 1.08888 1.19092 0.78988 0.79637 0.89195 1.90847 1.56611 1.64359 1.35496 1.19657 1.06576 0.93879 0.94294 1.21875 0.93388 1.01075 0.91259 1.21615 0.98523 0.94758 0.97709 1.21960 0.92834 0.94056 0.97654 1.19793 1.07046 0.93014 0.95776 1.18488 0.76199 0.88064 0.82843 1.43465 1.67718 1.12894 1.14516 1.90852 1.49064 1.64993 1.42918 1.21061 0.94987 0.93341 0.96942 1.21485 0.94765 0.97961 0.85112 0.94874 0.89822 0.94635 0.80352 0.94429 0.89972 0.89938 0.93134 0.86572 0.87186 0.88151 0.82271 0.79326 0.80138 0.74548 0.75366 0.88673 0.90840 0.93626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.39 9.14 71.98 0.66 -4.74 16 2 C 0.17 6.84 2.47 44.99 0.11 6.95 16 3 H 0.05 2.00 8.08 -2.39 -0.02 1.99 16 4 N -0.74 -39.51 4.52 -322.96 -1.46 -40.97 16 5 C -0.23 -13.46 9.93 84.03 0.83 -12.63 16 6 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 7 C -0.08 -5.15 5.50 84.86 0.47 -4.68 16 8 N -0.97 -65.19 13.06 21.65 0.28 -64.91 16 9 Si 0.97 49.03 29.55 68.60 2.03 51.05 16 10 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 11 H -0.30 -15.52 7.11 99.48 0.71 -14.81 16 12 H -0.27 -13.11 7.11 99.48 0.71 -12.40 16 13 C -0.09 -3.02 1.99 -10.57 -0.02 -3.04 16 14 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 15 C -0.11 -2.29 4.85 30.62 0.15 -2.15 16 16 C -0.13 -2.08 6.08 30.67 0.19 -1.89 16 17 C 0.09 1.50 5.37 86.36 0.46 1.96 16 18 N -0.60 -17.87 2.97 -821.45 -2.44 -20.31 16 19 C 0.54 19.43 7.23 86.79 0.63 20.06 16 20 O -0.59 -29.27 16.47 -3.88 -0.06 -29.34 16 21 C -0.14 -3.63 5.00 -20.12 -0.10 -3.73 16 22 C -0.06 -0.77 7.36 22.58 0.17 -0.61 16 23 C -0.11 -0.63 10.02 22.19 0.22 -0.41 16 24 C -0.05 -0.34 9.54 22.58 0.22 -0.13 16 25 C -0.15 -2.93 5.87 -20.12 -0.12 -3.05 16 26 C 0.56 11.88 8.05 86.79 0.70 12.58 16 27 N -0.82 -7.01 8.82 -175.60 -1.55 -8.55 16 28 O -0.60 -20.22 17.18 -3.89 -0.07 -20.29 16 29 C -0.04 -1.23 9.28 22.79 0.21 -1.02 16 30 C 0.13 4.81 5.49 86.51 0.47 5.29 16 31 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.08 2.18 6.40 -2.39 -0.02 2.17 16 33 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.37 22.05 7.64 -92.70 -0.71 21.34 16 35 H 0.25 16.17 8.31 -92.71 -0.77 15.40 16 36 H 0.08 1.59 6.36 -2.39 -0.02 1.57 16 37 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 38 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 39 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.11 1.36 4.56 -2.39 -0.01 1.35 16 41 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.16 1.40 7.07 -2.91 -0.02 1.38 16 43 H 0.19 -0.65 8.06 -2.91 -0.02 -0.68 16 44 H 0.18 -0.54 6.39 -2.91 -0.02 -0.56 16 45 H 0.42 -0.21 6.85 -92.71 -0.64 -0.85 16 46 H 0.41 2.85 8.93 -92.71 -0.83 2.02 16 47 H 0.09 3.56 7.65 -2.91 -0.02 3.54 16 48 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 49 H 0.05 2.28 6.56 -2.39 -0.02 2.26 16 Total: -1.00 -98.58 392.85 0.82 -97.77 By element: Atomic # 1 Polarization: 27.94 SS G_CDS: -1.16 Total: 26.78 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: 5.25 Total: 8.77 kcal Atomic # 7 Polarization: -129.58 SS G_CDS: -5.16 Total: -134.74 kcal Atomic # 8 Polarization: -49.50 SS G_CDS: -0.13 Total: -49.63 kcal Atomic # 14 Polarization: 49.03 SS G_CDS: 2.03 Total: 51.05 kcal Total: -98.58 0.82 -97.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482470823.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.048 kcal (2) G-P(sol) polarization free energy of solvation -98.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds