Wall clock time and date at job start Wed Apr 1 2020 03:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 5 5 C 1.36930 * 119.99841 * 275.00145 * 4 2 1 6 6 H 1.07999 * 120.00622 * 359.97438 * 5 4 2 7 7 C 1.38817 * 119.99916 * 179.97438 * 5 4 2 8 8 N 1.31620 * 119.99831 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00233 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47381 * 60.00163 * 9 7 5 11 11 H 1.48499 * 109.47297 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47076 * 299.99885 * 9 7 5 13 13 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 14 14 C 1.38229 * 119.99649 * 279.72729 * 13 2 1 15 15 C 1.38241 * 120.00138 * 179.78876 * 14 13 2 16 16 C 1.38233 * 119.99694 * 0.45883 * 15 14 13 17 17 C 1.50696 * 120.00427 * 179.79289 * 16 15 14 18 18 N 1.46504 * 109.46969 * 269.98175 * 17 16 15 19 19 C 1.34781 * 119.99822 * 179.97438 * 18 17 16 20 20 O 1.21281 * 119.99719 * 0.02562 * 19 18 17 21 21 C 1.50697 * 119.99855 * 179.97438 * 19 18 17 22 22 C 1.52999 * 110.21778 * 276.93393 * 21 19 18 23 23 C 1.54477 * 110.24494 * 155.00083 * 21 19 18 24 24 C 1.54625 * 101.76690 * 266.42088 * 23 21 19 25 25 C 1.51284 * 104.19397 * 335.19706 * 24 23 21 26 26 O 1.21281 * 124.94084 * 196.28386 * 25 24 23 27 27 N 1.34418 * 110.11368 * 16.25665 * 25 24 23 28 28 C 1.38239 * 120.00058 * 359.77140 * 16 15 14 29 29 C 1.38235 * 120.00032 * 0.02562 * 28 16 15 30 30 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 33 33 H 0.97001 * 119.99547 * 95.00125 * 4 2 1 34 34 H 0.97006 * 120.00314 * 179.97438 * 8 7 5 35 35 H 1.08005 * 120.00524 * 359.97438 * 14 13 2 36 36 H 1.08000 * 120.00457 * 180.25292 * 15 14 13 37 37 H 1.09007 * 109.46656 * 29.97750 * 17 16 15 38 38 H 1.08994 * 109.47412 * 149.97796 * 17 16 15 39 39 H 0.96998 * 120.00019 * 359.97438 * 18 17 16 40 40 H 1.08993 * 109.47415 * 59.30179 * 22 21 19 41 41 H 1.09004 * 109.46923 * 179.30016 * 22 21 19 42 42 H 1.09004 * 109.46833 * 299.29746 * 22 21 19 43 43 H 1.09004 * 110.97097 * 24.53788 * 23 21 19 44 44 H 1.09001 * 110.97176 * 148.25696 * 23 21 19 45 45 H 1.08998 * 110.49150 * 93.88407 * 24 23 21 46 46 H 1.09002 * 110.48404 * 216.52437 * 24 23 21 47 47 H 0.97002 * 124.34884 * 180.39867 * 27 25 24 48 48 H 1.07996 * 120.00033 * 179.97438 * 28 16 15 49 49 H 1.08000 * 120.00274 * 179.97438 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1492 -0.0075 2.3756 6 1 1.8927 1.0404 2.4242 7 6 2.6115 -0.6620 3.5092 8 7 2.9246 -1.9391 3.4500 9 14 2.7892 0.2696 5.1185 10 1 1.4667 0.8062 5.5285 11 1 3.2984 -0.6488 6.1685 12 1 3.7445 1.3921 4.9377 13 6 2.0324 -0.7103 -1.2306 14 6 2.0720 -2.0917 -1.2634 15 6 2.5287 -2.7434 -2.3937 16 6 2.9547 -2.0136 -3.4877 17 6 3.4569 -2.7238 -4.7182 18 7 4.9023 -2.9341 -4.6048 19 6 5.5726 -3.5556 -5.5953 20 8 4.9792 -3.9403 -6.5806 21 6 7.0595 -3.7715 -5.4790 22 6 7.8122 -2.5128 -5.9148 23 6 7.4933 -4.9788 -6.3395 24 6 7.4458 -6.1324 -5.3110 25 6 7.6319 -5.4466 -3.9755 26 8 7.9335 -6.0069 -2.9430 27 7 7.4149 -4.1259 -4.0998 28 6 2.9194 -0.6320 -3.4531 29 6 2.4588 0.0196 -2.3243 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 2.2491 -1.6318 1.1525 34 1 3.2480 -2.3964 4.2420 35 1 1.7434 -2.6619 -0.4070 36 1 2.5559 -3.8227 -2.4209 37 1 2.9557 -3.6873 -4.8115 38 1 3.2459 -2.1177 -5.5992 39 1 5.3769 -2.6262 -3.8169 40 1 7.5131 -1.6744 -5.2859 41 1 8.8850 -2.6778 -5.8141 42 1 7.5750 -2.2895 -6.9550 43 1 6.7882 -5.1518 -7.1526 44 1 8.5035 -4.8402 -6.7249 45 1 6.4810 -6.6381 -5.3492 46 1 8.2555 -6.8392 -5.4930 47 1 7.4841 -3.4889 -3.3715 48 1 3.2526 -0.0618 -4.3076 49 1 2.4317 1.0989 -2.2971 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484560128.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:49 Heat of formation + Delta-G solvation = -40.142543 kcal Electronic energy + Delta-G solvation = -29720.022464 eV Core-core repulsion = 25646.746451 eV Total energy + Delta-G solvation = -4073.276013 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.48373 -39.67161 -39.05339 -36.83188 -36.05001 -34.69399 -32.45436 -31.69298 -31.39392 -30.77670 -30.24255 -28.38580 -26.39909 -25.25911 -23.98815 -23.11440 -22.57983 -21.66017 -21.07842 -20.35213 -19.76744 -18.63912 -17.47714 -17.11931 -16.44406 -16.05706 -15.77027 -15.50678 -15.14124 -14.81896 -14.65106 -14.38156 -14.30874 -14.08636 -13.78305 -13.52458 -13.42837 -13.24265 -13.02578 -12.99424 -12.95594 -12.76874 -12.49920 -12.29111 -12.01576 -11.74116 -11.59481 -11.50961 -11.20685 -10.96290 -10.85271 -10.77841 -10.66090 -10.34984 -10.19563 -10.05234 -9.71546 -9.46673 -9.38201 -9.00676 -8.71005 -8.38529 -7.03676 -5.81474 -3.10740 1.38471 1.61951 2.11225 2.25294 2.85892 2.93455 3.41006 3.45536 3.46787 3.77316 3.97581 4.02870 4.20599 4.39046 4.55203 4.58963 4.64072 4.83982 4.90553 5.03102 5.12862 5.14086 5.23484 5.30235 5.33327 5.43756 5.48015 5.52179 5.52489 5.55868 5.66443 5.72656 5.90213 5.96948 6.06165 6.18933 6.25844 6.30017 6.31086 6.45450 6.56666 6.57635 6.65260 6.71352 6.90846 7.10792 7.14169 7.21547 7.64820 7.79696 7.87359 8.36518 9.47852 10.02949 10.38105 11.40945 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011970 B = 0.002426 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.695897 B =11538.853757 C =13067.475880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.203 3.797 3 H 0.056 0.944 4 N -0.721 5.721 5 C -0.242 4.242 6 H 0.071 0.929 7 C -0.011 4.011 8 N -0.932 5.932 9 Si 0.908 3.092 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.286 1.286 13 C -0.051 4.051 14 C -0.105 4.105 15 C -0.098 4.098 16 C -0.134 4.134 17 C 0.166 3.834 18 N -0.714 5.714 19 C 0.511 3.489 20 O -0.534 6.534 21 C 0.141 3.859 22 C -0.151 4.151 23 C -0.115 4.115 24 C -0.159 4.159 25 C 0.523 3.477 26 O -0.522 6.522 27 N -0.724 5.724 28 C -0.102 4.102 29 C -0.122 4.122 30 H 0.057 0.943 31 H 0.048 0.952 32 H 0.038 0.962 33 H 0.385 0.615 34 H 0.257 0.743 35 H 0.129 0.871 36 H 0.118 0.882 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.403 0.597 40 H 0.069 0.931 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.110 0.890 44 H 0.093 0.907 45 H 0.107 0.893 46 H 0.107 0.893 47 H 0.413 0.587 48 H 0.117 0.883 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.362 -1.892 -23.966 25.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.094 3.906 3 H 0.074 0.926 4 N -0.364 5.364 5 C -0.373 4.373 6 H 0.089 0.911 7 C -0.208 4.208 8 N -0.579 5.579 9 Si 0.739 3.261 10 H -0.212 1.212 11 H -0.217 1.217 12 H -0.212 1.212 13 C -0.052 4.052 14 C -0.123 4.123 15 C -0.117 4.117 16 C -0.134 4.134 17 C 0.044 3.956 18 N -0.365 5.365 19 C 0.295 3.705 20 O -0.410 6.410 21 C 0.051 3.949 22 C -0.210 4.210 23 C -0.153 4.153 24 C -0.199 4.199 25 C 0.309 3.691 26 O -0.397 6.397 27 N -0.383 5.383 28 C -0.121 4.121 29 C -0.140 4.140 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.220 0.780 34 H 0.067 0.933 35 H 0.147 0.853 36 H 0.136 0.864 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.238 0.762 40 H 0.088 0.912 41 H 0.097 0.903 42 H 0.100 0.900 43 H 0.128 0.872 44 H 0.111 0.889 45 H 0.125 0.875 46 H 0.125 0.875 47 H 0.253 0.747 48 H 0.135 0.865 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 7.083 -2.460 -24.054 25.196 hybrid contribution 0.307 0.718 1.773 1.937 sum 7.390 -1.742 -22.282 23.540 Atomic orbital electron populations 1.22425 0.98216 1.01187 1.00177 1.19255 0.92184 0.94988 0.84204 0.92618 1.42513 1.78237 1.10707 1.04906 1.19184 1.37020 0.93968 0.87148 0.91128 1.24747 1.01921 0.95992 0.98103 1.69645 1.50511 1.08664 1.29129 0.86262 0.77798 0.78607 0.83469 1.21221 1.21660 1.21249 1.20551 0.95038 0.94032 0.95623 1.21102 0.99026 0.94462 0.97736 1.21025 0.98295 0.99497 0.92836 1.19624 1.04319 0.93865 0.95614 1.20189 0.79541 1.00145 0.95752 1.46145 1.09291 1.59252 1.21806 1.20724 0.89181 0.77581 0.83044 1.90713 1.69157 1.50343 1.30746 1.21225 0.91509 0.98667 0.83519 1.22071 1.00880 0.94921 1.03091 1.22672 1.03946 0.90794 0.97876 1.22416 1.05720 0.99155 0.92622 1.20917 0.75031 0.82512 0.90646 1.90809 1.47047 1.68768 1.33107 1.46373 1.71444 1.09760 1.10702 1.20908 0.99718 0.93416 0.98032 1.21020 1.00032 0.99820 0.93142 0.92344 0.93313 0.94316 0.77993 0.93349 0.85334 0.86385 0.90720 0.90637 0.76248 0.91228 0.90258 0.89971 0.87198 0.88853 0.87520 0.87472 0.74705 0.86490 0.86082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.83 9.47 37.16 0.35 -2.48 16 2 C 0.20 3.94 3.09 -69.08 -0.21 3.73 16 3 H 0.06 1.08 7.94 -51.93 -0.41 0.67 16 4 N -0.72 -17.61 5.07 -54.55 -0.28 -17.89 16 5 C -0.24 -6.58 9.93 -15.06 -0.15 -6.73 16 6 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 7 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 8 N -0.93 -27.81 13.06 55.49 0.72 -27.09 16 9 Si 0.91 22.14 29.55 -169.99 -5.02 17.12 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 13 C -0.05 -0.85 4.96 -104.62 -0.52 -1.37 16 14 C -0.10 -1.72 9.06 -39.58 -0.36 -2.08 16 15 C -0.10 -1.34 9.70 -39.58 -0.38 -1.72 16 16 C -0.13 -1.58 5.25 -104.62 -0.55 -2.13 16 17 C 0.17 1.70 5.80 -5.19 -0.03 1.67 16 18 N -0.71 -6.62 5.46 -61.47 -0.34 -6.95 16 19 C 0.51 4.86 6.75 -10.98 -0.07 4.79 16 20 O -0.53 -6.59 15.64 5.56 0.09 -6.50 16 21 C 0.14 0.97 1.11 -132.05 -0.15 0.82 16 22 C -0.15 -0.72 8.79 37.16 0.33 -0.40 16 23 C -0.11 -0.68 6.14 -25.10 -0.15 -0.84 16 24 C -0.16 -1.17 6.85 -26.74 -0.18 -1.35 16 25 C 0.52 5.55 8.43 -10.86 -0.09 5.46 16 26 O -0.52 -8.03 18.03 5.56 0.10 -7.93 16 27 N -0.72 -5.80 4.98 -47.68 -0.24 -6.04 16 28 C -0.10 -1.21 9.70 -39.58 -0.38 -1.59 16 29 C -0.12 -1.69 9.67 -39.58 -0.38 -2.07 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.38 9.92 6.05 -40.82 -0.25 9.68 16 34 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 35 H 0.13 2.30 6.90 -52.48 -0.36 1.94 16 36 H 0.12 1.47 8.06 -52.49 -0.42 1.04 16 37 H 0.07 0.80 8.09 -51.93 -0.42 0.38 16 38 H 0.08 0.74 8.08 -51.93 -0.42 0.32 16 39 H 0.40 3.44 7.86 -40.82 -0.32 3.12 16 40 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 41 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.11 0.73 6.88 -51.93 -0.36 0.37 16 44 H 0.09 0.36 7.91 -51.93 -0.41 -0.05 16 45 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.11 0.63 8.14 -51.93 -0.42 0.20 16 47 H 0.41 3.01 8.79 -40.82 -0.36 2.65 16 48 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 49 H 0.12 1.49 8.04 -52.49 -0.42 1.07 16 LS Contribution 407.24 15.07 6.14 6.14 Total: -1.00 -34.12 407.24 -9.37 -43.48 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: -7.50 Total: 12.36 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: -3.04 Total: -6.71 kcal Atomic # 7 Polarization: -57.84 SS G_CDS: -0.12 Total: -57.96 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: 0.19 Total: -14.43 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -34.12 -9.37 -43.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484560128.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.341 kcal (2) G-P(sol) polarization free energy of solvation -34.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds