Wall clock time and date at job start Wed Apr 1 2020 03:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 5 5 C 1.36930 * 119.99841 * 275.00145 * 4 2 1 6 6 H 1.07999 * 120.00622 * 359.97438 * 5 4 2 7 7 C 1.38817 * 119.99916 * 179.97438 * 5 4 2 8 8 N 1.31620 * 119.99831 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00233 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47381 * 60.00163 * 9 7 5 11 11 H 1.48499 * 109.47297 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47076 * 299.99885 * 9 7 5 13 13 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 14 14 C 1.38229 * 119.99649 * 279.72729 * 13 2 1 15 15 C 1.38241 * 120.00138 * 179.78876 * 14 13 2 16 16 C 1.38233 * 119.99694 * 0.45883 * 15 14 13 17 17 C 1.50696 * 120.00427 * 179.79289 * 16 15 14 18 18 N 1.46504 * 109.46969 * 269.98175 * 17 16 15 19 19 C 1.34781 * 119.99822 * 179.97438 * 18 17 16 20 20 O 1.21281 * 119.99719 * 0.02562 * 19 18 17 21 21 C 1.50697 * 119.99855 * 179.97438 * 19 18 17 22 22 C 1.52999 * 110.21778 * 276.93393 * 21 19 18 23 23 C 1.54477 * 110.24494 * 155.00083 * 21 19 18 24 24 C 1.54625 * 101.76690 * 266.42088 * 23 21 19 25 25 C 1.51284 * 104.19397 * 335.19706 * 24 23 21 26 26 O 1.21281 * 124.94084 * 196.28386 * 25 24 23 27 27 N 1.34418 * 110.11368 * 16.25665 * 25 24 23 28 28 C 1.38239 * 120.00058 * 359.77140 * 16 15 14 29 29 C 1.38235 * 120.00032 * 0.02562 * 28 16 15 30 30 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 33 33 H 0.97001 * 119.99547 * 95.00125 * 4 2 1 34 34 H 0.97006 * 120.00314 * 179.97438 * 8 7 5 35 35 H 1.08005 * 120.00524 * 359.97438 * 14 13 2 36 36 H 1.08000 * 120.00457 * 180.25292 * 15 14 13 37 37 H 1.09007 * 109.46656 * 29.97750 * 17 16 15 38 38 H 1.08994 * 109.47412 * 149.97796 * 17 16 15 39 39 H 0.96998 * 120.00019 * 359.97438 * 18 17 16 40 40 H 1.08993 * 109.47415 * 59.30179 * 22 21 19 41 41 H 1.09004 * 109.46923 * 179.30016 * 22 21 19 42 42 H 1.09004 * 109.46833 * 299.29746 * 22 21 19 43 43 H 1.09004 * 110.97097 * 24.53788 * 23 21 19 44 44 H 1.09001 * 110.97176 * 148.25696 * 23 21 19 45 45 H 1.08998 * 110.49150 * 93.88407 * 24 23 21 46 46 H 1.09002 * 110.48404 * 216.52437 * 24 23 21 47 47 H 0.97002 * 124.34884 * 180.39867 * 27 25 24 48 48 H 1.07996 * 120.00033 * 179.97438 * 28 16 15 49 49 H 1.08000 * 120.00274 * 179.97438 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1492 -0.0075 2.3756 6 1 1.8927 1.0404 2.4242 7 6 2.6115 -0.6620 3.5092 8 7 2.9246 -1.9391 3.4500 9 14 2.7892 0.2696 5.1185 10 1 1.4667 0.8062 5.5285 11 1 3.2984 -0.6488 6.1685 12 1 3.7445 1.3921 4.9377 13 6 2.0324 -0.7103 -1.2306 14 6 2.0720 -2.0917 -1.2634 15 6 2.5287 -2.7434 -2.3937 16 6 2.9547 -2.0136 -3.4877 17 6 3.4569 -2.7238 -4.7182 18 7 4.9023 -2.9341 -4.6048 19 6 5.5726 -3.5556 -5.5953 20 8 4.9792 -3.9403 -6.5806 21 6 7.0595 -3.7715 -5.4790 22 6 7.8122 -2.5128 -5.9148 23 6 7.4933 -4.9788 -6.3395 24 6 7.4458 -6.1324 -5.3110 25 6 7.6319 -5.4466 -3.9755 26 8 7.9335 -6.0069 -2.9430 27 7 7.4149 -4.1259 -4.0998 28 6 2.9194 -0.6320 -3.4531 29 6 2.4588 0.0196 -2.3243 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 2.2491 -1.6318 1.1525 34 1 3.2480 -2.3964 4.2420 35 1 1.7434 -2.6619 -0.4070 36 1 2.5559 -3.8227 -2.4209 37 1 2.9557 -3.6873 -4.8115 38 1 3.2459 -2.1177 -5.5992 39 1 5.3769 -2.6262 -3.8169 40 1 7.5131 -1.6744 -5.2859 41 1 8.8850 -2.6778 -5.8141 42 1 7.5750 -2.2895 -6.9550 43 1 6.7882 -5.1518 -7.1526 44 1 8.5035 -4.8402 -6.7249 45 1 6.4810 -6.6381 -5.3492 46 1 8.2555 -6.8392 -5.4930 47 1 7.4841 -3.4889 -3.3715 48 1 3.2526 -0.0618 -4.3076 49 1 2.4317 1.0989 -2.2971 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484560128.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:48 Heat of formation + Delta-G solvation = -64.052700 kcal Electronic energy + Delta-G solvation = -29721.059286 eV Core-core repulsion = 25646.746451 eV Total energy + Delta-G solvation = -4074.312835 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.19570 -40.71337 -40.00985 -37.73504 -37.35576 -35.85660 -34.15147 -32.43378 -32.10328 -31.88021 -31.44650 -30.02931 -27.38909 -26.00919 -25.70902 -24.05360 -23.62897 -22.83401 -21.81044 -21.18365 -20.97192 -19.45262 -19.33355 -17.87823 -17.45195 -17.07718 -16.79780 -16.65084 -16.18374 -16.14715 -15.71513 -15.52885 -15.11281 -15.08103 -14.90366 -14.78820 -14.52792 -14.35587 -14.25174 -13.79264 -13.69178 -13.57829 -13.44423 -13.32226 -13.19653 -13.06586 -12.83763 -12.71753 -12.44560 -12.20678 -12.13753 -12.03572 -12.01288 -11.62402 -11.61390 -11.51441 -11.06392 -11.00638 -10.24546 -10.19225 -9.81570 -9.55083 -9.04348 -7.95402 -5.24100 0.28269 0.50843 1.35945 1.44987 1.46017 1.48761 1.54872 2.10074 2.24615 2.54957 2.89655 3.18183 3.38893 3.44789 3.58578 3.67161 3.82227 3.85971 3.96686 4.02574 4.07061 4.12836 4.33154 4.34159 4.51771 4.57787 4.64495 4.66006 4.75392 4.77172 4.78072 4.81482 4.99022 4.99509 5.04245 5.05898 5.10210 5.18514 5.19762 5.28624 5.40165 5.48755 5.53605 5.60513 5.63412 5.82172 5.85307 6.07749 6.26330 6.38832 7.04081 7.10099 7.32577 8.07617 8.31238 9.27879 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011970 B = 0.002426 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.695897 B =11538.853757 C =13067.475880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.199 3.801 3 H 0.057 0.943 4 N -0.735 5.735 5 C -0.239 4.239 6 H 0.078 0.922 7 C -0.076 4.076 8 N -0.971 5.971 9 Si 0.972 3.028 10 H -0.278 1.278 11 H -0.298 1.298 12 H -0.277 1.277 13 C -0.073 4.073 14 C -0.125 4.125 15 C -0.102 4.102 16 C -0.117 4.117 17 C 0.171 3.829 18 N -0.712 5.712 19 C 0.511 3.489 20 O -0.561 6.561 21 C 0.144 3.856 22 C -0.148 4.148 23 C -0.108 4.108 24 C -0.155 4.155 25 C 0.514 3.486 26 O -0.580 6.580 27 N -0.714 5.714 28 C -0.089 4.089 29 C -0.120 4.120 30 H 0.042 0.958 31 H 0.038 0.962 32 H 0.070 0.930 33 H 0.374 0.626 34 H 0.250 0.750 35 H 0.099 0.901 36 H 0.125 0.875 37 H 0.069 0.931 38 H 0.089 0.911 39 H 0.407 0.593 40 H 0.073 0.927 41 H 0.093 0.907 42 H 0.090 0.910 43 H 0.107 0.893 44 H 0.121 0.879 45 H 0.103 0.897 46 H 0.124 0.876 47 H 0.416 0.584 48 H 0.153 0.847 49 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.241 -0.064 -26.820 28.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.091 3.909 3 H 0.075 0.925 4 N -0.376 5.376 5 C -0.371 4.371 6 H 0.096 0.904 7 C -0.269 4.269 8 N -0.622 5.622 9 Si 0.801 3.199 10 H -0.204 1.204 11 H -0.225 1.225 12 H -0.203 1.203 13 C -0.074 4.074 14 C -0.144 4.144 15 C -0.120 4.120 16 C -0.117 4.117 17 C 0.048 3.952 18 N -0.363 5.363 19 C 0.296 3.704 20 O -0.439 6.439 21 C 0.054 3.946 22 C -0.206 4.206 23 C -0.145 4.145 24 C -0.195 4.195 25 C 0.303 3.697 26 O -0.459 6.459 27 N -0.371 5.371 28 C -0.108 4.108 29 C -0.139 4.139 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.089 0.911 33 H 0.207 0.793 34 H 0.059 0.941 35 H 0.117 0.883 36 H 0.143 0.857 37 H 0.087 0.913 38 H 0.107 0.893 39 H 0.242 0.758 40 H 0.092 0.908 41 H 0.112 0.888 42 H 0.109 0.891 43 H 0.125 0.875 44 H 0.140 0.860 45 H 0.121 0.879 46 H 0.142 0.858 47 H 0.256 0.744 48 H 0.170 0.830 49 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 7.932 -0.554 -26.963 28.111 hybrid contribution -0.018 0.177 2.496 2.502 sum 7.914 -0.377 -24.467 25.718 Atomic orbital electron populations 1.22267 0.96921 1.00785 1.00964 1.19430 0.92966 0.94772 0.83768 0.92532 1.42730 1.78496 1.10431 1.05990 1.19603 1.35007 0.94315 0.88180 0.90403 1.25550 1.02966 0.96866 1.01472 1.69817 1.52585 1.10285 1.29466 0.85231 0.77997 0.77308 0.79356 1.20364 1.22484 1.20280 1.20326 0.97326 0.94034 0.95698 1.20948 1.00855 0.94611 0.97964 1.21101 0.98241 1.00032 0.92651 1.19763 1.02606 0.94110 0.95237 1.20123 0.80040 0.99926 0.95128 1.46114 1.08930 1.59207 1.22023 1.21146 0.90113 0.76747 0.82413 1.90708 1.69916 1.51417 1.31813 1.21362 0.89994 1.00392 0.82828 1.22099 1.01341 0.93577 1.03566 1.22741 1.05488 0.89296 0.97006 1.22450 1.06160 0.99865 0.91062 1.21493 0.74007 0.83278 0.90965 1.90776 1.49854 1.69996 1.35288 1.46403 1.70005 1.09138 1.11536 1.21240 0.97945 0.93369 0.98215 1.21224 0.99228 1.00739 0.92673 0.93859 0.94312 0.91065 0.79320 0.94142 0.88256 0.85746 0.91279 0.89294 0.75755 0.90815 0.88828 0.89093 0.87455 0.86048 0.87862 0.85829 0.74419 0.82966 0.84204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.28 9.47 71.98 0.68 -4.60 16 2 C 0.20 7.73 3.09 44.25 0.14 7.87 16 3 H 0.06 2.17 7.94 -2.39 -0.02 2.15 16 4 N -0.74 -36.97 5.07 -326.50 -1.66 -38.62 16 5 C -0.24 -13.21 9.93 84.04 0.83 -12.37 16 6 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 7 C -0.08 -4.40 5.50 84.86 0.47 -3.93 16 8 N -0.97 -60.01 13.06 21.65 0.28 -59.73 16 9 Si 0.97 46.25 29.55 68.60 2.03 48.27 16 10 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 11 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 12 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 13 C -0.07 -2.41 4.96 -19.86 -0.10 -2.51 16 14 C -0.13 -4.22 9.06 22.27 0.20 -4.02 16 15 C -0.10 -2.75 9.70 22.27 0.22 -2.53 16 16 C -0.12 -2.50 5.25 -19.87 -0.10 -2.60 16 17 C 0.17 3.06 5.80 85.63 0.50 3.56 16 18 N -0.71 -11.61 5.46 -466.78 -2.55 -14.16 16 19 C 0.51 8.59 6.75 87.66 0.59 9.18 16 20 O -0.56 -12.68 15.64 -3.03 -0.05 -12.73 16 21 C 0.14 1.63 1.11 3.31 0.00 1.64 16 22 C -0.15 -0.91 8.79 71.98 0.63 -0.28 16 23 C -0.11 -0.99 6.14 31.65 0.19 -0.80 16 24 C -0.16 -2.06 6.85 30.59 0.21 -1.85 16 25 C 0.51 10.70 8.43 87.90 0.74 11.44 16 26 O -0.58 -18.32 18.03 -3.03 -0.05 -18.38 16 27 N -0.71 -10.49 4.98 -423.36 -2.11 -12.59 16 28 C -0.09 -1.81 9.70 22.27 0.22 -1.60 16 29 C -0.12 -3.06 9.67 22.27 0.22 -2.84 16 30 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 33 H 0.37 20.26 6.05 -92.71 -0.56 19.70 16 34 H 0.25 15.09 8.31 -92.70 -0.77 14.32 16 35 H 0.10 3.87 6.90 -2.91 -0.02 3.85 16 36 H 0.12 3.12 8.06 -2.91 -0.02 3.10 16 37 H 0.07 1.36 8.09 -2.38 -0.02 1.34 16 38 H 0.09 1.43 8.08 -2.39 -0.02 1.41 16 39 H 0.41 6.10 7.86 -92.71 -0.73 5.37 16 40 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 41 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 42 H 0.09 0.47 8.14 -2.38 -0.02 0.45 16 43 H 0.11 1.15 6.88 -2.38 -0.02 1.13 16 44 H 0.12 0.48 7.91 -2.39 -0.02 0.46 16 45 H 0.10 1.46 8.14 -2.39 -0.02 1.45 16 46 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 47 H 0.42 5.60 8.79 -92.71 -0.82 4.79 16 48 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 49 H 0.14 3.00 8.04 -2.91 -0.02 2.97 16 Total: -1.00 -76.64 407.24 0.42 -76.22 By element: Atomic # 1 Polarization: 39.07 SS G_CDS: -1.12 Total: 37.95 kcal Atomic # 6 Polarization: -11.87 SS G_CDS: 5.64 Total: -6.23 kcal Atomic # 7 Polarization: -119.08 SS G_CDS: -6.03 Total: -125.10 kcal Atomic # 8 Polarization: -31.01 SS G_CDS: -0.10 Total: -31.11 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.27 kcal Total: -76.64 0.42 -76.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484560128.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.167 kcal (2) G-P(sol) polarization free energy of solvation -76.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds