Wall clock time and date at job start Wed Apr 1 2020 03:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47364 * 2 1 4 4 N 1.46499 * 109.47728 * 240.00150 * 2 1 3 5 5 C 1.36943 * 120.00240 * 84.99651 * 4 2 1 6 6 H 1.08004 * 119.99427 * 0.02562 * 5 4 2 7 7 C 1.38803 * 120.00430 * 180.02562 * 5 4 2 8 8 N 1.31627 * 120.00064 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00343 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.46774 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47101 * 119.99869 * 9 7 5 12 12 H 1.48499 * 109.47027 * 239.99809 * 9 7 5 13 13 C 1.50701 * 109.46931 * 119.99988 * 2 1 3 14 14 C 1.38228 * 120.00210 * 260.00143 * 13 2 1 15 15 C 1.38240 * 120.00098 * 180.02562 * 14 13 2 16 16 C 1.38230 * 120.00174 * 359.95674 * 15 14 13 17 17 C 1.50698 * 120.00434 * 180.02562 * 16 15 14 18 18 N 1.46493 * 109.47082 * 89.99576 * 17 16 15 19 19 C 1.34784 * 119.99864 * 180.02562 * 18 17 16 20 20 O 1.21283 * 119.99649 * 359.72839 * 19 18 17 21 21 C 1.50694 * 119.99988 * 179.72721 * 19 18 17 22 22 C 1.53006 * 110.21750 * 276.92902 * 21 19 18 23 23 C 1.54485 * 110.24533 * 155.00145 * 21 19 18 24 24 C 1.54630 * 101.76140 * 266.41375 * 23 21 19 25 25 C 1.51274 * 104.19882 * 335.20183 * 24 23 21 26 26 O 1.21287 * 124.94607 * 196.28823 * 25 24 23 27 27 N 1.34418 * 110.11984 * 16.25318 * 25 24 23 28 28 C 1.38239 * 119.99581 * 0.27697 * 16 15 14 29 29 C 1.38235 * 119.99703 * 80.02506 * 13 2 1 30 30 H 1.08996 * 109.47417 * 300.00152 * 1 2 3 31 31 H 1.09000 * 109.46971 * 60.00057 * 1 2 3 32 32 H 1.09001 * 109.46964 * 179.97438 * 1 2 3 33 33 H 0.96999 * 120.00345 * 265.00537 * 4 2 1 34 34 H 0.96997 * 120.00306 * 179.97438 * 8 7 5 35 35 H 1.08006 * 120.00175 * 0.02562 * 14 13 2 36 36 H 1.08002 * 119.99603 * 179.97438 * 15 14 13 37 37 H 1.09007 * 109.46606 * 329.99826 * 17 16 15 38 38 H 1.09006 * 109.47204 * 210.00283 * 17 16 15 39 39 H 0.97000 * 120.00740 * 359.72841 * 18 17 16 40 40 H 1.08996 * 109.46608 * 59.29880 * 22 21 19 41 41 H 1.09001 * 109.46848 * 179.29986 * 22 21 19 42 42 H 1.08994 * 109.46680 * 299.30163 * 22 21 19 43 43 H 1.09000 * 110.96893 * 24.53063 * 23 21 19 44 44 H 1.08998 * 110.97055 * 148.26154 * 23 21 19 45 45 H 1.08998 * 110.48579 * 93.88517 * 24 23 21 46 46 H 1.09002 * 110.48448 * 216.51940 * 24 23 21 47 47 H 0.96995 * 124.35821 * 180.40642 * 27 25 24 48 48 H 1.08009 * 119.99658 * 179.72932 * 28 16 15 49 49 H 1.08005 * 120.00287 * 0.02562 * 29 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0185 -0.6905 -1.1961 5 6 2.1493 -0.0074 -2.3758 6 1 1.8927 1.0406 -2.4241 7 6 2.6116 -0.6618 -3.5092 8 7 2.9248 -1.9389 -3.4502 9 14 2.7907 0.2703 -5.1181 10 1 2.3777 1.6829 -4.9204 11 1 4.2076 0.2265 -5.5605 12 1 1.9297 -0.3576 -6.1524 13 6 2.0323 -0.7104 1.2305 14 6 2.4586 0.0193 2.3243 15 6 2.9198 -0.6324 3.4528 16 6 2.9539 -2.0138 3.4878 17 6 3.4562 -2.7243 4.7182 18 7 2.3366 -2.9730 5.6297 19 6 2.5497 -3.6006 6.8033 20 8 3.6675 -3.9638 7.1025 21 6 1.3991 -3.8511 7.7436 22 6 1.1274 -2.6058 8.5902 23 6 1.7067 -5.0602 8.6547 24 6 1.0567 -6.2215 7.8673 25 6 -0.0151 -5.5520 7.0359 26 8 -0.9336 -6.1280 6.4921 27 7 0.1979 -4.2257 6.9880 28 6 2.5321 -2.7435 2.3921 29 6 2.0671 -2.0919 1.2651 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.2491 -1.6317 -1.1527 34 1 3.2475 -2.3963 -4.2423 35 1 2.4314 1.0987 2.2973 36 1 3.2533 -0.0621 4.3072 37 1 4.2004 -2.1038 5.2177 38 1 3.9085 -3.6735 4.4306 39 1 1.4426 -2.6823 5.3906 40 1 0.8908 -1.7666 7.9363 41 1 0.2859 -2.7960 9.2565 42 1 2.0121 -2.3681 9.1809 43 1 2.7817 -5.2100 8.7544 44 1 1.2391 -4.9411 9.6321 45 1 1.7921 -6.7049 7.2242 46 1 0.6128 -6.9448 8.5514 47 1 -0.3693 -3.5969 6.5150 48 1 2.5628 -3.8229 2.4178 49 1 1.7348 -2.6621 0.4102 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484560132.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:53 Heat of formation + Delta-G solvation = -40.349695 kcal Electronic energy + Delta-G solvation = -29578.153327 eV Core-core repulsion = 25504.868332 eV Total energy + Delta-G solvation = -4073.284996 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.54838 -39.70001 -39.08972 -36.90105 -36.06783 -34.71829 -32.46795 -31.75726 -31.46020 -30.77859 -30.25714 -28.39286 -26.42117 -25.31407 -24.00133 -23.15361 -22.58706 -21.67425 -21.15816 -20.41423 -19.77604 -18.69899 -17.48190 -17.20196 -16.45862 -16.09904 -15.80694 -15.54308 -15.17180 -14.84758 -14.68289 -14.42267 -14.34543 -14.13940 -13.83529 -13.47077 -13.42841 -13.25244 -13.09226 -13.07160 -13.00512 -12.82581 -12.51872 -12.35700 -11.99095 -11.70351 -11.58897 -11.56713 -11.28479 -10.96927 -10.89341 -10.82403 -10.66759 -10.32090 -10.28383 -10.01543 -9.72395 -9.53900 -9.41510 -9.01937 -8.71080 -8.38855 -7.03630 -5.82034 -3.11166 1.38015 1.61780 2.06327 2.16757 2.79445 2.87343 3.40200 3.45689 3.48076 3.70822 3.94614 3.98412 4.15060 4.34140 4.52541 4.54937 4.62973 4.78192 4.90530 4.96971 5.06560 5.14194 5.23464 5.25033 5.33112 5.38279 5.44290 5.50100 5.51955 5.52187 5.66240 5.72222 5.89872 5.96542 6.02598 6.18531 6.21967 6.25385 6.29691 6.44627 6.47867 6.56230 6.64857 6.70820 6.90211 7.10031 7.10593 7.21197 7.65611 7.75208 7.78961 8.36104 9.47562 10.02678 10.37681 11.40606 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019000 B = 0.002005 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.364397 B =13964.118859 C =14289.647629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.203 3.797 3 H 0.056 0.944 4 N -0.721 5.721 5 C -0.240 4.240 6 H 0.072 0.928 7 C -0.013 4.013 8 N -0.931 5.931 9 Si 0.907 3.093 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.291 1.291 13 C -0.051 4.051 14 C -0.122 4.122 15 C -0.102 4.102 16 C -0.133 4.133 17 C 0.165 3.835 18 N -0.714 5.714 19 C 0.510 3.490 20 O -0.532 6.532 21 C 0.141 3.859 22 C -0.151 4.151 23 C -0.115 4.115 24 C -0.159 4.159 25 C 0.523 3.477 26 O -0.525 6.525 27 N -0.724 5.724 28 C -0.098 4.098 29 C -0.105 4.105 30 H 0.037 0.963 31 H 0.057 0.943 32 H 0.048 0.952 33 H 0.385 0.615 34 H 0.255 0.745 35 H 0.121 0.879 36 H 0.117 0.883 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.401 0.599 40 H 0.068 0.932 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.110 0.890 44 H 0.093 0.907 45 H 0.107 0.893 46 H 0.107 0.893 47 H 0.412 0.588 48 H 0.118 0.882 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.200 -1.980 28.274 28.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.094 3.906 3 H 0.074 0.926 4 N -0.364 5.364 5 C -0.371 4.371 6 H 0.090 0.910 7 C -0.209 4.209 8 N -0.580 5.580 9 Si 0.739 3.261 10 H -0.205 1.205 11 H -0.218 1.218 12 H -0.218 1.218 13 C -0.052 4.052 14 C -0.140 4.140 15 C -0.121 4.121 16 C -0.134 4.134 17 C 0.043 3.957 18 N -0.365 5.365 19 C 0.294 3.706 20 O -0.407 6.407 21 C 0.051 3.949 22 C -0.209 4.209 23 C -0.153 4.153 24 C -0.199 4.199 25 C 0.310 3.690 26 O -0.400 6.400 27 N -0.382 5.382 28 C -0.116 4.116 29 C -0.123 4.123 30 H 0.056 0.944 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.220 0.780 34 H 0.065 0.935 35 H 0.139 0.861 36 H 0.135 0.865 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.236 0.764 40 H 0.087 0.913 41 H 0.097 0.903 42 H 0.101 0.899 43 H 0.129 0.871 44 H 0.112 0.888 45 H 0.125 0.875 46 H 0.126 0.874 47 H 0.252 0.748 48 H 0.136 0.864 49 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.763 -2.525 28.084 28.333 hybrid contribution -0.404 0.685 -1.481 1.681 sum -3.166 -1.839 26.604 26.855 Atomic orbital electron populations 1.22423 0.98228 1.01163 1.00159 1.19255 0.92161 0.95008 0.84212 0.92601 1.42534 1.78199 1.10722 1.04924 1.19280 1.36714 0.94016 0.87095 0.91002 1.24752 1.01968 0.96012 0.98147 1.69668 1.50730 1.08683 1.28881 0.86112 0.77344 0.78789 0.83901 1.20522 1.21839 1.21833 1.20548 0.95056 0.94031 0.95600 1.21019 1.00035 0.99819 0.93152 1.20909 0.99676 0.93422 0.98062 1.19615 1.04473 0.93855 0.95449 1.20206 0.88139 1.00097 0.87256 1.46132 1.12353 1.59194 1.18792 1.20715 0.90113 0.77687 0.82133 1.90726 1.24111 1.51037 1.74841 1.21241 0.83638 0.98523 0.91514 1.22069 1.03852 0.95064 0.99955 1.22679 1.04457 0.90632 0.97554 1.22418 0.98204 0.99229 1.00094 1.20924 0.85525 0.82483 0.80060 1.90800 1.33590 1.68087 1.47496 1.46358 1.28011 1.09307 1.54558 1.21029 0.98115 0.99500 0.92984 1.21105 0.99008 0.94460 0.97768 0.94355 0.92347 0.93318 0.77992 0.93470 0.86081 0.86491 0.90580 0.90610 0.76439 0.91269 0.90278 0.89915 0.87138 0.88840 0.87455 0.87442 0.74846 0.86377 0.85335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 9.47 37.16 0.35 -2.44 16 2 C 0.20 3.94 3.09 -69.08 -0.21 3.72 16 3 H 0.06 1.09 7.94 -51.93 -0.41 0.68 16 4 N -0.72 -17.66 5.07 -54.55 -0.28 -17.93 16 5 C -0.24 -6.53 9.93 -15.06 -0.15 -6.68 16 6 H 0.07 1.90 7.83 -52.48 -0.41 1.48 16 7 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 8 N -0.93 -27.83 13.06 55.49 0.72 -27.10 16 9 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 13 C -0.05 -0.85 4.95 -104.63 -0.52 -1.37 16 14 C -0.12 -1.69 9.67 -39.58 -0.38 -2.07 16 15 C -0.10 -1.21 9.70 -39.58 -0.38 -1.59 16 16 C -0.13 -1.57 5.25 -104.63 -0.55 -2.12 16 17 C 0.17 1.69 5.80 -5.20 -0.03 1.66 16 18 N -0.71 -6.09 5.46 -61.47 -0.34 -6.43 16 19 C 0.51 4.54 6.75 -10.98 -0.07 4.47 16 20 O -0.53 -6.42 15.64 5.56 0.09 -6.33 16 21 C 0.14 0.85 1.11 -132.04 -0.15 0.70 16 22 C -0.15 -0.58 8.79 37.16 0.33 -0.26 16 23 C -0.12 -0.61 6.14 -25.10 -0.15 -0.76 16 24 C -0.16 -1.04 6.85 -26.75 -0.18 -1.23 16 25 C 0.52 4.93 8.43 -10.86 -0.09 4.84 16 26 O -0.52 -7.31 18.03 5.55 0.10 -7.21 16 27 N -0.72 -4.84 4.98 -47.68 -0.24 -5.08 16 28 C -0.10 -1.33 9.70 -39.58 -0.38 -1.72 16 29 C -0.11 -1.72 9.06 -39.58 -0.36 -2.08 16 30 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.38 9.95 6.06 -40.82 -0.25 9.71 16 34 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.12 1.49 8.04 -52.48 -0.42 1.07 16 36 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 37 H 0.08 0.77 8.09 -51.93 -0.42 0.35 16 38 H 0.08 0.84 8.08 -51.93 -0.42 0.42 16 39 H 0.40 2.90 7.86 -40.82 -0.32 2.58 16 40 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 41 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 42 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.11 0.68 6.88 -51.93 -0.36 0.32 16 44 H 0.09 0.30 7.91 -51.93 -0.41 -0.11 16 45 H 0.11 0.74 8.14 -51.93 -0.42 0.31 16 46 H 0.11 0.55 8.14 -51.93 -0.42 0.12 16 47 H 0.41 2.28 8.79 -40.82 -0.36 1.92 16 48 H 0.12 1.47 8.06 -52.48 -0.42 1.05 16 49 H 0.13 2.30 6.91 -52.48 -0.36 1.94 16 LS Contribution 407.27 15.07 6.14 6.14 Total: -1.00 -34.25 407.27 -9.37 -43.61 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: -7.51 Total: 10.58 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: -3.04 Total: -7.39 kcal Atomic # 7 Polarization: -56.42 SS G_CDS: -0.12 Total: -56.54 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: 0.19 Total: -13.54 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -34.25 -9.37 -43.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484560132.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.265 kcal (2) G-P(sol) polarization free energy of solvation -34.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds