Wall clock time and date at job start Wed Apr 1 2020 03:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47364 * 2 1 4 4 N 1.46499 * 109.47728 * 240.00150 * 2 1 3 5 5 C 1.36943 * 120.00240 * 84.99651 * 4 2 1 6 6 H 1.08004 * 119.99427 * 0.02562 * 5 4 2 7 7 C 1.38803 * 120.00430 * 180.02562 * 5 4 2 8 8 N 1.31627 * 120.00064 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00343 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.46774 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47101 * 119.99869 * 9 7 5 12 12 H 1.48499 * 109.47027 * 239.99809 * 9 7 5 13 13 C 1.50701 * 109.46931 * 119.99988 * 2 1 3 14 14 C 1.38228 * 120.00210 * 260.00143 * 13 2 1 15 15 C 1.38240 * 120.00098 * 180.02562 * 14 13 2 16 16 C 1.38230 * 120.00174 * 359.95674 * 15 14 13 17 17 C 1.50698 * 120.00434 * 180.02562 * 16 15 14 18 18 N 1.46493 * 109.47082 * 89.99576 * 17 16 15 19 19 C 1.34784 * 119.99864 * 180.02562 * 18 17 16 20 20 O 1.21283 * 119.99649 * 359.72839 * 19 18 17 21 21 C 1.50694 * 119.99988 * 179.72721 * 19 18 17 22 22 C 1.53006 * 110.21750 * 276.92902 * 21 19 18 23 23 C 1.54485 * 110.24533 * 155.00145 * 21 19 18 24 24 C 1.54630 * 101.76140 * 266.41375 * 23 21 19 25 25 C 1.51274 * 104.19882 * 335.20183 * 24 23 21 26 26 O 1.21287 * 124.94607 * 196.28823 * 25 24 23 27 27 N 1.34418 * 110.11984 * 16.25318 * 25 24 23 28 28 C 1.38239 * 119.99581 * 0.27697 * 16 15 14 29 29 C 1.38235 * 119.99703 * 80.02506 * 13 2 1 30 30 H 1.08996 * 109.47417 * 300.00152 * 1 2 3 31 31 H 1.09000 * 109.46971 * 60.00057 * 1 2 3 32 32 H 1.09001 * 109.46964 * 179.97438 * 1 2 3 33 33 H 0.96999 * 120.00345 * 265.00537 * 4 2 1 34 34 H 0.96997 * 120.00306 * 179.97438 * 8 7 5 35 35 H 1.08006 * 120.00175 * 0.02562 * 14 13 2 36 36 H 1.08002 * 119.99603 * 179.97438 * 15 14 13 37 37 H 1.09007 * 109.46606 * 329.99826 * 17 16 15 38 38 H 1.09006 * 109.47204 * 210.00283 * 17 16 15 39 39 H 0.97000 * 120.00740 * 359.72841 * 18 17 16 40 40 H 1.08996 * 109.46608 * 59.29880 * 22 21 19 41 41 H 1.09001 * 109.46848 * 179.29986 * 22 21 19 42 42 H 1.08994 * 109.46680 * 299.30163 * 22 21 19 43 43 H 1.09000 * 110.96893 * 24.53063 * 23 21 19 44 44 H 1.08998 * 110.97055 * 148.26154 * 23 21 19 45 45 H 1.08998 * 110.48579 * 93.88517 * 24 23 21 46 46 H 1.09002 * 110.48448 * 216.51940 * 24 23 21 47 47 H 0.96995 * 124.35821 * 180.40642 * 27 25 24 48 48 H 1.08009 * 119.99658 * 179.72932 * 28 16 15 49 49 H 1.08005 * 120.00287 * 0.02562 * 29 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0185 -0.6905 -1.1961 5 6 2.1493 -0.0074 -2.3758 6 1 1.8927 1.0406 -2.4241 7 6 2.6116 -0.6618 -3.5092 8 7 2.9248 -1.9389 -3.4502 9 14 2.7907 0.2703 -5.1181 10 1 2.3777 1.6829 -4.9204 11 1 4.2076 0.2265 -5.5605 12 1 1.9297 -0.3576 -6.1524 13 6 2.0323 -0.7104 1.2305 14 6 2.4586 0.0193 2.3243 15 6 2.9198 -0.6324 3.4528 16 6 2.9539 -2.0138 3.4878 17 6 3.4562 -2.7243 4.7182 18 7 2.3366 -2.9730 5.6297 19 6 2.5497 -3.6006 6.8033 20 8 3.6675 -3.9638 7.1025 21 6 1.3991 -3.8511 7.7436 22 6 1.1274 -2.6058 8.5902 23 6 1.7067 -5.0602 8.6547 24 6 1.0567 -6.2215 7.8673 25 6 -0.0151 -5.5520 7.0359 26 8 -0.9336 -6.1280 6.4921 27 7 0.1979 -4.2257 6.9880 28 6 2.5321 -2.7435 2.3921 29 6 2.0671 -2.0919 1.2651 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.2491 -1.6317 -1.1527 34 1 3.2475 -2.3963 -4.2423 35 1 2.4314 1.0987 2.2973 36 1 3.2533 -0.0621 4.3072 37 1 4.2004 -2.1038 5.2177 38 1 3.9085 -3.6735 4.4306 39 1 1.4426 -2.6823 5.3906 40 1 0.8908 -1.7666 7.9363 41 1 0.2859 -2.7960 9.2565 42 1 2.0121 -2.3681 9.1809 43 1 2.7817 -5.2100 8.7544 44 1 1.2391 -4.9411 9.6321 45 1 1.7921 -6.7049 7.2242 46 1 0.6128 -6.9448 8.5514 47 1 -0.3693 -3.5969 6.5150 48 1 2.5628 -3.8229 2.4178 49 1 1.7348 -2.6621 0.4102 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484560132.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:52 Heat of formation + Delta-G solvation = -64.411173 kcal Electronic energy + Delta-G solvation = -29579.196711 eV Core-core repulsion = 25504.868332 eV Total energy + Delta-G solvation = -4074.328380 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.19203 -40.71407 -40.00605 -37.72808 -37.35591 -35.86348 -34.15471 -32.43363 -32.09841 -31.87887 -31.44457 -30.02894 -27.39081 -26.01106 -25.70807 -24.05488 -23.62885 -22.83922 -21.80720 -21.19295 -20.97232 -19.45464 -19.33796 -17.87366 -17.43573 -17.08590 -16.80554 -16.65004 -16.18659 -16.13614 -15.71071 -15.52184 -15.11935 -15.05412 -14.94267 -14.74246 -14.47296 -14.39678 -14.25817 -13.86126 -13.68258 -13.57785 -13.46495 -13.32280 -13.18844 -12.99984 -12.82545 -12.74447 -12.50440 -12.14264 -12.10700 -12.03176 -12.00888 -11.62791 -11.59616 -11.51824 -11.05746 -11.03489 -10.24118 -10.19168 -9.81565 -9.55099 -9.04442 -7.96019 -5.24663 0.28189 0.50724 1.36641 1.45548 1.46116 1.46629 1.56610 2.09960 2.24881 2.54523 2.88801 3.18810 3.38701 3.45483 3.59703 3.66889 3.82642 3.85856 3.96552 4.02097 4.07396 4.13363 4.32864 4.34335 4.51771 4.58011 4.65137 4.66899 4.75449 4.77595 4.79102 4.82613 4.99104 4.99889 5.04398 5.06577 5.10233 5.19819 5.20012 5.28751 5.40382 5.49081 5.53846 5.60412 5.63653 5.82172 5.86729 6.07677 6.26429 6.40712 7.05992 7.11459 7.32286 8.07241 8.30544 9.27844 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019000 B = 0.002005 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.364397 B =13964.118859 C =14289.647629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.198 3.802 3 H 0.056 0.944 4 N -0.736 5.736 5 C -0.236 4.236 6 H 0.079 0.921 7 C -0.078 4.078 8 N -0.971 5.971 9 Si 0.972 3.028 10 H -0.264 1.264 11 H -0.295 1.295 12 H -0.295 1.295 13 C -0.073 4.073 14 C -0.120 4.120 15 C -0.090 4.090 16 C -0.116 4.116 17 C 0.171 3.829 18 N -0.709 5.709 19 C 0.509 3.491 20 O -0.563 6.563 21 C 0.146 3.854 22 C -0.148 4.148 23 C -0.109 4.109 24 C -0.157 4.157 25 C 0.517 3.483 26 O -0.578 6.578 27 N -0.711 5.711 28 C -0.102 4.102 29 C -0.125 4.125 30 H 0.072 0.928 31 H 0.042 0.958 32 H 0.038 0.962 33 H 0.373 0.627 34 H 0.250 0.750 35 H 0.140 0.860 36 H 0.153 0.847 37 H 0.086 0.914 38 H 0.066 0.934 39 H 0.409 0.591 40 H 0.075 0.925 41 H 0.094 0.906 42 H 0.088 0.912 43 H 0.104 0.896 44 H 0.122 0.878 45 H 0.101 0.899 46 H 0.123 0.877 47 H 0.417 0.583 48 H 0.124 0.876 49 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.162 -0.074 31.316 31.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.090 3.910 3 H 0.074 0.926 4 N -0.377 5.377 5 C -0.368 4.368 6 H 0.097 0.903 7 C -0.270 4.270 8 N -0.622 5.622 9 Si 0.802 3.198 10 H -0.188 1.188 11 H -0.222 1.222 12 H -0.223 1.223 13 C -0.074 4.074 14 C -0.138 4.138 15 C -0.108 4.108 16 C -0.117 4.117 17 C 0.048 3.952 18 N -0.360 5.360 19 C 0.294 3.706 20 O -0.441 6.441 21 C 0.056 3.944 22 C -0.206 4.206 23 C -0.147 4.147 24 C -0.197 4.197 25 C 0.305 3.695 26 O -0.457 6.457 27 N -0.368 5.368 28 C -0.120 4.120 29 C -0.144 4.144 30 H 0.091 0.909 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.207 0.793 34 H 0.059 0.941 35 H 0.158 0.842 36 H 0.170 0.830 37 H 0.104 0.896 38 H 0.084 0.916 39 H 0.245 0.755 40 H 0.094 0.906 41 H 0.113 0.887 42 H 0.106 0.894 43 H 0.123 0.877 44 H 0.140 0.860 45 H 0.120 0.880 46 H 0.141 0.859 47 H 0.258 0.742 48 H 0.142 0.858 49 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.749 -0.539 31.172 31.298 hybrid contribution -0.404 0.112 -2.281 2.319 sum -3.153 -0.427 28.892 29.066 Atomic orbital electron populations 1.22256 0.96786 1.00782 1.01011 1.19437 0.93047 0.94745 0.83738 0.92573 1.42758 1.78476 1.10447 1.06038 1.19681 1.34681 0.94318 0.88129 0.90343 1.25560 1.03043 0.96911 1.01522 1.69830 1.52783 1.10298 1.29323 0.85084 0.76691 0.78292 0.79777 1.18788 1.22246 1.22258 1.20325 0.97338 0.94028 0.95684 1.21223 0.99214 1.00744 0.92660 1.21237 0.97914 0.93354 0.98269 1.19751 1.02647 0.94115 0.95177 1.20086 0.88716 0.99617 0.86814 1.46050 1.12316 1.59102 1.18521 1.21211 0.90465 0.76776 0.82135 1.90720 1.25616 1.52254 1.75485 1.21334 0.81989 1.00143 0.90931 1.22100 1.04748 0.93813 0.99899 1.22743 1.04202 0.89319 0.98429 1.22453 0.97229 0.99997 1.00052 1.21406 0.85245 0.83258 0.79613 1.90770 1.35878 1.69257 1.49829 1.46342 1.27899 1.08675 1.53925 1.21102 0.98086 1.00027 0.92821 1.20950 1.00810 0.94611 0.97986 0.90934 0.93902 0.94317 0.79338 0.94129 0.84181 0.82968 0.89587 0.91580 0.75521 0.90560 0.88688 0.89358 0.87736 0.86013 0.88044 0.85868 0.74191 0.85761 0.88240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.17 9.47 71.98 0.68 -4.49 16 2 C 0.20 7.70 3.09 44.25 0.14 7.83 16 3 H 0.06 2.16 7.94 -2.39 -0.02 2.14 16 4 N -0.74 -37.07 5.07 -326.51 -1.66 -38.73 16 5 C -0.24 -13.06 9.93 84.03 0.83 -12.22 16 6 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 7 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 8 N -0.97 -60.06 13.06 21.65 0.28 -59.78 16 9 Si 0.97 46.33 29.55 68.60 2.03 48.35 16 10 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 11 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 12 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 13 C -0.07 -2.40 4.95 -19.87 -0.10 -2.49 16 14 C -0.12 -3.04 9.67 22.27 0.22 -2.82 16 15 C -0.09 -1.81 9.70 22.27 0.22 -1.59 16 16 C -0.12 -2.49 5.25 -19.87 -0.10 -2.60 16 17 C 0.17 3.09 5.80 85.63 0.50 3.59 16 18 N -0.71 -10.43 5.46 -466.78 -2.55 -12.97 16 19 C 0.51 7.96 6.75 87.65 0.59 8.55 16 20 O -0.56 -12.62 15.64 -3.04 -0.05 -12.66 16 21 C 0.15 1.37 1.11 3.31 0.00 1.38 16 22 C -0.15 -0.60 8.79 71.98 0.63 0.03 16 23 C -0.11 -0.87 6.14 31.65 0.19 -0.67 16 24 C -0.16 -1.84 6.85 30.59 0.21 -1.63 16 25 C 0.52 9.32 8.43 87.90 0.74 10.06 16 26 O -0.58 -16.31 18.03 -3.05 -0.06 -16.36 16 27 N -0.71 -8.23 4.98 -423.34 -2.11 -10.33 16 28 C -0.10 -2.75 9.70 22.27 0.22 -2.54 16 29 C -0.12 -4.21 9.06 22.27 0.20 -4.00 16 30 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.37 20.30 6.06 -92.71 -0.56 19.74 16 34 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 35 H 0.14 2.99 8.04 -2.91 -0.02 2.96 16 36 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 37 H 0.09 1.46 8.09 -2.38 -0.02 1.44 16 38 H 0.07 1.37 8.08 -2.38 -0.02 1.35 16 39 H 0.41 4.85 7.86 -92.71 -0.73 4.12 16 40 H 0.08 0.24 8.14 -2.39 -0.02 0.22 16 41 H 0.09 0.15 8.14 -2.39 -0.02 0.13 16 42 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 43 H 0.10 1.06 6.88 -2.39 -0.02 1.04 16 44 H 0.12 0.32 7.91 -2.39 -0.02 0.30 16 45 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 46 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 47 H 0.42 3.85 8.79 -92.71 -0.82 3.04 16 48 H 0.12 3.12 8.06 -2.91 -0.02 3.10 16 49 H 0.10 3.86 6.91 -2.91 -0.02 3.84 16 Total: -1.00 -77.01 407.27 0.41 -76.60 By element: Atomic # 1 Polarization: 34.69 SS G_CDS: -1.12 Total: 33.58 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: 5.64 Total: -7.69 kcal Atomic # 7 Polarization: -115.79 SS G_CDS: -6.03 Total: -121.81 kcal Atomic # 8 Polarization: -28.92 SS G_CDS: -0.10 Total: -29.02 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.35 kcal Total: -77.01 0.41 -76.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484560132.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.184 kcal (2) G-P(sol) polarization free energy of solvation -77.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds