Wall clock time and date at job start Wed Apr 1 2020 02:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 110.30671 * 2 1 4 4 C 1.54386 * 110.43199 * 122.23833 * 2 1 3 5 5 N 1.48144 * 104.62005 * 95.04610 * 4 2 1 6 6 C 1.34777 * 127.84056 * 219.58178 * 5 4 2 7 7 O 1.21281 * 119.99886 * 179.97438 * 6 5 4 8 8 C 1.50703 * 119.99981 * 0.02562 * 6 5 4 9 9 C 1.50289 * 109.46345 * 300.00617 * 8 6 5 10 10 C 1.32313 * 121.61032 * 303.33499 * 9 8 6 11 11 C 1.45206 * 123.00117 * 1.00837 * 10 9 8 12 12 C 1.32937 * 125.19774 * 319.53062 * 11 10 9 13 13 C 1.45207 * 125.19972 * 0.02562 * 12 11 10 14 14 C 1.32289 * 123.02208 * 40.42796 * 13 12 11 15 15 C 1.48154 * 104.32110 * 39.58542 * 5 4 2 16 16 C 1.54281 * 110.33853 * 237.82609 * 2 1 3 17 17 H 1.09007 * 110.34497 * 122.04843 * 16 2 1 18 18 N 1.46894 * 110.34593 * 359.89423 * 16 2 1 19 19 C 1.46899 * 111.00064 * 154.99906 * 18 16 2 20 20 C 1.50705 * 109.47451 * 179.97438 * 19 18 16 21 21 O 1.21295 * 119.99318 * 0.02562 * 20 19 18 22 22 N 1.34766 * 120.00277 * 179.97438 * 20 19 18 23 23 C 1.37105 * 120.00065 * 180.02562 * 22 20 19 24 24 H 1.07994 * 119.99652 * 0.02562 * 23 22 20 25 25 C 1.38946 * 119.99914 * 180.02562 * 23 22 20 26 26 N 1.31414 * 120.00488 * 0.02562 * 25 23 22 27 27 Si 1.86808 * 119.99978 * 180.02562 * 25 23 22 28 28 H 1.48497 * 109.46953 * 60.00130 * 27 25 23 29 29 H 1.48494 * 109.47001 * 180.02562 * 27 25 23 30 30 H 1.48496 * 109.46710 * 300.00280 * 27 25 23 31 31 H 1.08993 * 109.47190 * 180.70179 * 1 2 3 32 32 H 1.09001 * 109.46854 * 300.70066 * 1 2 3 33 33 H 1.08998 * 109.47051 * 60.69613 * 1 2 3 34 34 H 1.08999 * 110.40596 * 213.83106 * 4 2 1 35 35 H 1.08998 * 110.40934 * 336.25860 * 4 2 1 36 36 H 1.09003 * 109.46618 * 59.99621 * 8 6 5 37 37 H 1.08000 * 119.20010 * 123.31967 * 9 8 6 38 38 H 1.07997 * 118.50861 * 180.97167 * 10 9 8 39 39 H 1.07997 * 117.39436 * 139.55403 * 11 10 9 40 40 H 1.08001 * 117.40147 * 179.97438 * 12 11 10 41 41 H 1.07999 * 118.48287 * 220.45730 * 13 12 11 42 42 H 1.07999 * 119.19774 * 179.00236 * 14 13 12 43 43 H 1.09000 * 110.40147 * 201.62776 * 15 5 4 44 44 H 1.09000 * 110.40322 * 79.20000 * 15 5 4 45 45 H 1.00903 * 111.00457 * 278.94961 * 18 16 2 46 46 H 1.08993 * 109.47380 * 300.00026 * 19 18 16 47 47 H 1.09007 * 109.47189 * 60.00405 * 19 18 16 48 48 H 0.97000 * 120.00482 * 0.02562 * 22 20 19 49 49 H 0.96991 * 120.00296 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9083 1.0223 0.0000 4 6 2.0690 -0.7717 1.2237 5 7 2.3177 -2.1430 0.7211 6 6 2.0835 -3.3103 1.3529 7 8 2.3427 -4.3599 0.8033 8 6 1.4984 -3.3112 2.7417 9 6 2.4177 -2.5722 3.6730 10 6 3.6837 -2.9263 3.8233 11 6 4.2884 -4.0283 3.0964 12 6 3.7030 -5.1960 2.8490 13 6 2.3610 -5.5641 3.2638 14 6 1.3369 -4.7281 3.2160 15 6 2.8824 -1.9400 -0.6334 16 6 2.0663 -0.7703 -1.2245 17 1 2.7065 -0.1259 -1.8270 18 7 0.9524 -1.2824 -2.0337 19 6 1.3624 -1.4767 -3.4308 20 6 0.1965 -2.0021 -4.2282 21 8 -0.8711 -2.1952 -3.6858 22 7 0.3398 -2.2565 -5.5438 23 6 -0.7211 -2.7340 -6.2693 24 1 -1.6716 -2.9059 -5.7865 25 6 -0.5731 -2.9967 -7.6256 26 7 0.5837 -2.7880 -8.2131 27 14 -2.0188 -3.6467 -8.6143 28 1 -3.1360 -2.6701 -8.5578 29 1 -1.6040 -3.8439 -10.0264 30 1 -2.4652 -4.9431 -8.0442 31 1 -0.3633 -1.0275 0.0126 32 1 -0.3633 0.5247 0.8837 33 1 -0.3633 0.5030 -0.8961 34 1 2.9969 -0.3226 1.5778 35 1 1.3254 -0.7880 2.0205 36 1 0.5253 -2.8202 2.7263 37 1 2.0359 -1.7315 4.2330 38 1 4.2956 -2.3700 4.5179 39 1 5.2938 -3.8883 2.7278 40 1 4.2704 -5.9289 2.2946 41 1 2.1914 -6.5663 3.6287 42 1 0.3610 -5.0723 3.5251 43 1 2.7524 -2.8378 -1.2377 44 1 3.9373 -1.6734 -0.5693 45 1 0.5842 -2.1367 -1.6428 46 1 1.6896 -0.5249 -3.8492 47 1 2.1828 -2.1932 -3.4724 48 1 1.1935 -2.1017 -5.9776 49 1 0.6871 -2.9717 -9.1598 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484890554.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:45 Heat of formation + Delta-G solvation = -0.795857 kcal Electronic energy + Delta-G solvation = -30673.835231 eV Core-core repulsion = 26602.265419 eV Total energy + Delta-G solvation = -4071.569812 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.79664 -39.11081 -37.99987 -36.91680 -34.61077 -33.76982 -32.73120 -32.47513 -32.02286 -31.17638 -29.04247 -27.09254 -26.20956 -25.83074 -24.00919 -23.77912 -22.95204 -20.39014 -19.69203 -19.28360 -18.54683 -17.86987 -17.73539 -17.48542 -16.65030 -16.27998 -15.94127 -15.48842 -14.97847 -14.67932 -14.53326 -14.48584 -14.19783 -13.89230 -13.73404 -13.58173 -13.25591 -13.07175 -12.73993 -12.55056 -12.47260 -12.24236 -12.15945 -12.01480 -11.72828 -11.64741 -11.49717 -11.13452 -11.12055 -10.97625 -10.84562 -10.65733 -10.42709 -10.42089 -10.18815 -9.98224 -9.47325 -9.45009 -8.90418 -8.42347 -8.37371 -7.99234 -7.92327 -6.39010 -3.79733 1.04613 1.78079 2.58731 2.89259 3.05589 3.22296 3.27543 3.32208 3.94102 4.09575 4.27935 4.36266 4.44810 4.50090 4.65143 4.70293 4.86168 4.87806 4.93594 5.02686 5.09025 5.18405 5.20837 5.27262 5.33527 5.37745 5.42727 5.48531 5.58513 5.69389 5.73102 5.74097 5.74982 5.85689 5.96974 6.05669 6.14694 6.21571 6.27099 6.31332 6.34035 6.53220 6.56697 6.65281 6.65975 7.24577 7.50334 7.57642 7.64282 8.08930 8.16401 8.64174 9.20622 9.57250 10.08864 10.78772 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016230 B = 0.002405 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.820394 B =11640.060829 C =12381.183568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.097 4.097 3 H 0.085 0.915 4 C 0.105 3.895 5 N -0.615 5.615 6 C 0.546 3.454 7 O -0.528 6.528 8 C -0.044 4.044 9 C -0.143 4.143 10 C -0.108 4.108 11 C -0.151 4.151 12 C -0.071 4.071 13 C -0.105 4.105 14 C -0.126 4.126 15 C 0.075 3.925 16 C 0.076 3.924 17 H 0.093 0.907 18 N -0.652 5.652 19 C 0.047 3.953 20 C 0.442 3.558 21 O -0.583 6.583 22 N -0.564 5.564 23 C -0.299 4.299 24 H 0.102 0.898 25 C 0.022 3.978 26 N -0.903 5.903 27 Si 0.930 3.070 28 H -0.273 1.273 29 H -0.284 1.284 30 H -0.274 1.274 31 H 0.055 0.945 32 H 0.040 0.960 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.107 0.893 37 H 0.122 0.878 38 H 0.117 0.883 39 H 0.109 0.891 40 H 0.112 0.888 41 H 0.118 0.882 42 H 0.121 0.879 43 H 0.082 0.918 44 H 0.070 0.930 45 H 0.352 0.648 46 H 0.087 0.913 47 H 0.043 0.957 48 H 0.392 0.608 49 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.086 4.330 24.815 26.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.116 4.116 3 H 0.103 0.897 4 C -0.018 4.018 5 N -0.349 5.349 6 C 0.334 3.666 7 O -0.403 6.403 8 C -0.065 4.065 9 C -0.161 4.161 10 C -0.126 4.126 11 C -0.169 4.169 12 C -0.089 4.089 13 C -0.123 4.123 14 C -0.145 4.145 15 C -0.050 4.050 16 C -0.036 4.036 17 H 0.111 0.889 18 N -0.283 5.283 19 C -0.085 4.085 20 C 0.227 3.773 21 O -0.467 6.467 22 N -0.201 5.201 23 C -0.428 4.428 24 H 0.120 0.880 25 C -0.179 4.179 26 N -0.544 5.544 27 Si 0.757 3.243 28 H -0.199 1.199 29 H -0.210 1.210 30 H -0.199 1.199 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.125 0.875 37 H 0.140 0.860 38 H 0.135 0.865 39 H 0.127 0.873 40 H 0.130 0.870 41 H 0.136 0.864 42 H 0.139 0.861 43 H 0.100 0.900 44 H 0.088 0.912 45 H 0.173 0.827 46 H 0.105 0.895 47 H 0.061 0.939 48 H 0.225 0.775 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.261 4.091 24.590 26.261 hybrid contribution 0.567 -0.974 -0.830 1.400 sum 8.829 3.117 23.760 25.538 Atomic orbital electron populations 1.21495 0.92917 1.02335 1.01221 1.22177 0.98069 0.98563 0.92838 0.89706 1.22552 1.00348 0.81741 0.97173 1.48787 1.63443 1.05533 1.17155 1.19997 0.77777 0.82051 0.86779 1.90725 1.51999 1.30331 1.67291 1.19172 0.99974 0.95774 0.91561 1.22894 0.93529 0.99213 1.00507 1.21099 0.95487 0.97047 0.98939 1.20976 1.00823 0.93661 1.01484 1.21069 0.94753 0.96990 0.96064 1.21023 0.92918 0.99244 0.99091 1.22718 0.98861 0.91824 1.01060 1.23135 0.97651 1.00041 0.84124 1.22599 0.91583 0.95070 0.94369 0.88893 1.60305 1.29957 1.37337 1.00722 1.21748 0.96390 1.00787 0.89611 1.19790 0.89608 0.84715 0.83177 1.90524 1.28430 1.57414 1.70330 1.41850 1.13842 1.57417 1.06944 1.19648 0.92880 1.39503 0.90812 0.88016 1.25253 0.97909 0.97755 0.97009 1.69601 1.23598 1.48960 1.12257 0.85923 0.80757 0.79450 0.78129 1.19886 1.20985 1.19926 0.92571 0.94134 0.90930 0.91291 0.90229 0.87538 0.86042 0.86486 0.87258 0.86984 0.86445 0.86105 0.89970 0.91174 0.82696 0.89510 0.93925 0.77485 0.91846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.37 8.11 37.16 0.30 -1.07 16 2 C -0.10 -0.91 3.65 -89.22 -0.33 -1.24 16 3 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 4 C 0.11 0.88 5.60 -2.41 -0.01 0.86 16 5 N -0.61 -6.99 3.30 -169.30 -0.56 -7.55 16 6 C 0.55 7.14 5.60 -10.98 -0.06 7.08 16 7 O -0.53 -8.92 13.94 5.56 0.08 -8.84 16 8 C -0.04 -0.44 2.24 -94.47 -0.21 -0.65 16 9 C -0.14 -1.14 7.53 -36.43 -0.27 -1.42 16 10 C -0.11 -0.91 9.58 -38.74 -0.37 -1.28 16 11 C -0.15 -1.54 8.53 -38.65 -0.33 -1.87 16 12 C -0.07 -0.79 7.35 -38.65 -0.28 -1.07 16 13 C -0.10 -1.12 9.09 -38.74 -0.35 -1.47 16 14 C -0.13 -1.30 8.77 -36.44 -0.32 -1.62 16 15 C 0.07 0.89 6.49 -2.40 -0.02 0.87 16 16 C 0.08 0.87 3.37 -66.32 -0.22 0.65 16 17 H 0.09 0.96 7.82 -51.93 -0.41 0.55 16 18 N -0.65 -10.23 4.13 -106.51 -0.44 -10.67 16 19 C 0.05 0.83 6.02 -4.97 -0.03 0.80 16 20 C 0.44 10.56 7.82 -10.99 -0.09 10.47 16 21 O -0.58 -16.04 15.78 5.54 0.09 -15.95 16 22 N -0.56 -14.52 5.29 -10.96 -0.06 -14.58 16 23 C -0.30 -8.48 9.68 -14.93 -0.14 -8.63 16 24 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 25 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 26 N -0.90 -24.91 13.05 55.50 0.72 -24.19 16 27 Si 0.93 21.43 29.55 -169.99 -5.02 16.40 16 28 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 29 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 30 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 31 H 0.06 0.75 7.49 -51.93 -0.39 0.36 16 32 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.98 7.90 -51.93 -0.41 0.57 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.57 6.63 -51.93 -0.34 0.23 16 36 H 0.11 0.90 7.95 -51.93 -0.41 0.49 16 37 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 38 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 39 H 0.11 1.03 8.06 -52.49 -0.42 0.61 16 40 H 0.11 1.23 8.06 -52.49 -0.42 0.81 16 41 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 42 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 43 H 0.08 1.21 7.73 -51.93 -0.40 0.80 16 44 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.35 6.30 7.70 -39.29 -0.30 6.00 16 46 H 0.09 1.37 8.07 -51.93 -0.42 0.95 16 47 H 0.04 0.70 8.12 -51.92 -0.42 0.28 16 48 H 0.39 9.64 7.90 -40.82 -0.32 9.32 16 49 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 394.98 15.07 5.95 5.95 Total: -1.00 -33.85 394.98 -9.65 -43.49 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: -7.57 Total: 15.00 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: -2.84 Total: 0.92 kcal Atomic # 7 Polarization: -56.65 SS G_CDS: -0.33 Total: -56.99 kcal Atomic # 8 Polarization: -24.95 SS G_CDS: 0.16 Total: -24.79 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.85 -9.65 -43.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484890554.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.699 kcal (2) G-P(sol) polarization free energy of solvation -33.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds