Wall clock time and date at job start Wed Apr 1 2020 02:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 110.30671 * 2 1 4 4 C 1.54386 * 110.43199 * 122.23833 * 2 1 3 5 5 N 1.48144 * 104.62005 * 95.04610 * 4 2 1 6 6 C 1.34777 * 127.84056 * 219.58178 * 5 4 2 7 7 O 1.21281 * 119.99886 * 179.97438 * 6 5 4 8 8 C 1.50703 * 119.99981 * 0.02562 * 6 5 4 9 9 C 1.50289 * 109.46345 * 300.00617 * 8 6 5 10 10 C 1.32313 * 121.61032 * 303.33499 * 9 8 6 11 11 C 1.45206 * 123.00117 * 1.00837 * 10 9 8 12 12 C 1.32937 * 125.19774 * 319.53062 * 11 10 9 13 13 C 1.45207 * 125.19972 * 0.02562 * 12 11 10 14 14 C 1.32289 * 123.02208 * 40.42796 * 13 12 11 15 15 C 1.48154 * 104.32110 * 39.58542 * 5 4 2 16 16 C 1.54281 * 110.33853 * 237.82609 * 2 1 3 17 17 H 1.09007 * 110.34497 * 122.04843 * 16 2 1 18 18 N 1.46894 * 110.34593 * 359.89423 * 16 2 1 19 19 C 1.46899 * 111.00064 * 154.99906 * 18 16 2 20 20 C 1.50705 * 109.47451 * 179.97438 * 19 18 16 21 21 O 1.21295 * 119.99318 * 0.02562 * 20 19 18 22 22 N 1.34766 * 120.00277 * 179.97438 * 20 19 18 23 23 C 1.37105 * 120.00065 * 180.02562 * 22 20 19 24 24 H 1.07994 * 119.99652 * 0.02562 * 23 22 20 25 25 C 1.38946 * 119.99914 * 180.02562 * 23 22 20 26 26 N 1.31414 * 120.00488 * 0.02562 * 25 23 22 27 27 Si 1.86808 * 119.99978 * 180.02562 * 25 23 22 28 28 H 1.48497 * 109.46953 * 60.00130 * 27 25 23 29 29 H 1.48494 * 109.47001 * 180.02562 * 27 25 23 30 30 H 1.48496 * 109.46710 * 300.00280 * 27 25 23 31 31 H 1.08993 * 109.47190 * 180.70179 * 1 2 3 32 32 H 1.09001 * 109.46854 * 300.70066 * 1 2 3 33 33 H 1.08998 * 109.47051 * 60.69613 * 1 2 3 34 34 H 1.08999 * 110.40596 * 213.83106 * 4 2 1 35 35 H 1.08998 * 110.40934 * 336.25860 * 4 2 1 36 36 H 1.09003 * 109.46618 * 59.99621 * 8 6 5 37 37 H 1.08000 * 119.20010 * 123.31967 * 9 8 6 38 38 H 1.07997 * 118.50861 * 180.97167 * 10 9 8 39 39 H 1.07997 * 117.39436 * 139.55403 * 11 10 9 40 40 H 1.08001 * 117.40147 * 179.97438 * 12 11 10 41 41 H 1.07999 * 118.48287 * 220.45730 * 13 12 11 42 42 H 1.07999 * 119.19774 * 179.00236 * 14 13 12 43 43 H 1.09000 * 110.40147 * 201.62776 * 15 5 4 44 44 H 1.09000 * 110.40322 * 79.20000 * 15 5 4 45 45 H 1.00903 * 111.00457 * 278.94961 * 18 16 2 46 46 H 1.08993 * 109.47380 * 300.00026 * 19 18 16 47 47 H 1.09007 * 109.47189 * 60.00405 * 19 18 16 48 48 H 0.97000 * 120.00482 * 0.02562 * 22 20 19 49 49 H 0.96991 * 120.00296 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9083 1.0223 0.0000 4 6 2.0690 -0.7717 1.2237 5 7 2.3177 -2.1430 0.7211 6 6 2.0835 -3.3103 1.3529 7 8 2.3427 -4.3599 0.8033 8 6 1.4984 -3.3112 2.7417 9 6 2.4177 -2.5722 3.6730 10 6 3.6837 -2.9263 3.8233 11 6 4.2884 -4.0283 3.0964 12 6 3.7030 -5.1960 2.8490 13 6 2.3610 -5.5641 3.2638 14 6 1.3369 -4.7281 3.2160 15 6 2.8824 -1.9400 -0.6334 16 6 2.0663 -0.7703 -1.2245 17 1 2.7065 -0.1259 -1.8270 18 7 0.9524 -1.2824 -2.0337 19 6 1.3624 -1.4767 -3.4308 20 6 0.1965 -2.0021 -4.2282 21 8 -0.8711 -2.1952 -3.6858 22 7 0.3398 -2.2565 -5.5438 23 6 -0.7211 -2.7340 -6.2693 24 1 -1.6716 -2.9059 -5.7865 25 6 -0.5731 -2.9967 -7.6256 26 7 0.5837 -2.7880 -8.2131 27 14 -2.0188 -3.6467 -8.6143 28 1 -3.1360 -2.6701 -8.5578 29 1 -1.6040 -3.8439 -10.0264 30 1 -2.4652 -4.9431 -8.0442 31 1 -0.3633 -1.0275 0.0126 32 1 -0.3633 0.5247 0.8837 33 1 -0.3633 0.5030 -0.8961 34 1 2.9969 -0.3226 1.5778 35 1 1.3254 -0.7880 2.0205 36 1 0.5253 -2.8202 2.7263 37 1 2.0359 -1.7315 4.2330 38 1 4.2956 -2.3700 4.5179 39 1 5.2938 -3.8883 2.7278 40 1 4.2704 -5.9289 2.2946 41 1 2.1914 -6.5663 3.6287 42 1 0.3610 -5.0723 3.5251 43 1 2.7524 -2.8378 -1.2377 44 1 3.9373 -1.6734 -0.5693 45 1 0.5842 -2.1367 -1.6428 46 1 1.6896 -0.5249 -3.8492 47 1 2.1828 -2.1932 -3.4724 48 1 1.1935 -2.1017 -5.9776 49 1 0.6871 -2.9717 -9.1598 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484890554.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:44 Heat of formation + Delta-G solvation = -23.641957 kcal Electronic energy + Delta-G solvation = -30674.825912 eV Core-core repulsion = 26602.265419 eV Total energy + Delta-G solvation = -4072.560494 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.67492 -40.32893 -39.57174 -37.84202 -36.16018 -35.45941 -33.60496 -33.25602 -33.21922 -32.85900 -30.12537 -28.25487 -27.19659 -26.99606 -25.65364 -24.49833 -23.92844 -21.29294 -21.09145 -20.56314 -19.95839 -19.34564 -18.51184 -18.22901 -17.84199 -17.44285 -17.13813 -16.68372 -16.44705 -16.09778 -15.98725 -15.49063 -15.34870 -15.14885 -14.93203 -14.64255 -14.30817 -14.08424 -13.99501 -13.58519 -13.43952 -13.35752 -13.21823 -13.16434 -13.06892 -12.90041 -12.85073 -12.63089 -12.45749 -12.14700 -11.99485 -11.84638 -11.72584 -11.52411 -11.47329 -11.18135 -10.89223 -10.36715 -10.18691 -10.03739 -9.82682 -9.21651 -9.12700 -8.48516 -5.97478 0.32371 1.06570 1.37817 1.39268 1.50525 1.67570 2.03485 2.08065 2.27413 2.27775 2.90589 3.18505 3.42827 3.58718 3.63959 3.79468 3.90037 3.99569 4.09217 4.15211 4.19874 4.25605 4.28013 4.35529 4.38436 4.48431 4.52172 4.56310 4.63039 4.69657 4.75774 4.81443 4.88832 4.98435 5.01749 5.03742 5.19349 5.28909 5.38352 5.42805 5.52995 5.64686 5.71207 5.81563 5.84648 5.91023 5.91450 6.12893 6.28282 6.58213 6.64013 7.10512 7.23264 7.54162 8.09809 8.68798 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016230 B = 0.002405 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.820394 B =11640.060829 C =12381.183568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.089 4.089 3 H 0.116 0.884 4 C 0.106 3.894 5 N -0.616 5.616 6 C 0.536 3.464 7 O -0.579 6.579 8 C -0.045 4.045 9 C -0.132 4.132 10 C -0.119 4.119 11 C -0.150 4.150 12 C -0.096 4.096 13 C -0.120 4.120 14 C -0.137 4.137 15 C 0.077 3.923 16 C 0.075 3.925 17 H 0.114 0.886 18 N -0.658 5.658 19 C 0.062 3.938 20 C 0.437 3.563 21 O -0.624 6.624 22 N -0.573 5.573 23 C -0.335 4.335 24 H 0.077 0.923 25 C -0.013 4.013 26 N -0.920 5.920 27 Si 0.993 3.007 28 H -0.270 1.270 29 H -0.269 1.269 30 H -0.274 1.274 31 H 0.027 0.973 32 H 0.066 0.934 33 H 0.045 0.955 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.124 0.876 37 H 0.158 0.842 38 H 0.143 0.857 39 H 0.110 0.890 40 H 0.098 0.902 41 H 0.126 0.874 42 H 0.136 0.864 43 H 0.045 0.955 44 H 0.091 0.909 45 H 0.336 0.664 46 H 0.113 0.887 47 H 0.056 0.944 48 H 0.396 0.604 49 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.725 6.739 26.394 28.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.108 4.108 3 H 0.134 0.866 4 C -0.015 4.015 5 N -0.349 5.349 6 C 0.326 3.674 7 O -0.458 6.458 8 C -0.066 4.066 9 C -0.149 4.149 10 C -0.137 4.137 11 C -0.168 4.168 12 C -0.114 4.114 13 C -0.138 4.138 14 C -0.155 4.155 15 C -0.048 4.048 16 C -0.036 4.036 17 H 0.132 0.868 18 N -0.289 5.289 19 C -0.070 4.070 20 C 0.224 3.776 21 O -0.510 6.510 22 N -0.211 5.211 23 C -0.465 4.465 24 H 0.095 0.905 25 C -0.212 4.212 26 N -0.561 5.561 27 Si 0.816 3.184 28 H -0.195 1.195 29 H -0.193 1.193 30 H -0.199 1.199 31 H 0.046 0.954 32 H 0.085 0.915 33 H 0.064 0.936 34 H 0.115 0.885 35 H 0.116 0.884 36 H 0.142 0.858 37 H 0.175 0.825 38 H 0.161 0.839 39 H 0.128 0.872 40 H 0.116 0.884 41 H 0.144 0.856 42 H 0.154 0.846 43 H 0.064 0.936 44 H 0.109 0.891 45 H 0.154 0.846 46 H 0.131 0.869 47 H 0.074 0.926 48 H 0.230 0.770 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.936 6.557 26.180 28.429 hybrid contribution 0.387 -1.709 -1.319 2.193 sum 9.322 4.848 24.861 26.990 Atomic orbital electron populations 1.21416 0.94452 1.00470 1.01146 1.22209 0.96589 0.99997 0.92043 0.86611 1.22785 1.02217 0.79585 0.96960 1.48906 1.62591 1.06526 1.16849 1.20645 0.77220 0.81727 0.87807 1.90701 1.54213 1.32239 1.68685 1.19290 1.01127 0.96134 0.90082 1.23112 0.92731 0.99529 0.99575 1.21315 0.96235 0.96733 0.99390 1.21206 1.00896 0.93882 1.00861 1.21116 0.95355 0.97633 0.97310 1.21206 0.92996 1.00031 0.99536 1.23012 0.99341 0.92357 1.00809 1.23074 0.98920 0.98532 0.84293 1.22794 0.90638 0.95143 0.95008 0.86833 1.60371 1.32057 1.36325 1.00104 1.21618 0.93513 1.01856 0.90005 1.20918 0.90806 0.83025 0.82804 1.90489 1.30769 1.58740 1.71039 1.41926 1.13480 1.57942 1.07715 1.19620 0.93043 1.41893 0.91933 0.90485 1.26043 1.00602 0.97286 0.97317 1.69661 1.24852 1.48807 1.12806 0.85000 0.77632 0.78636 0.77140 1.19514 1.19291 1.19921 0.95378 0.91498 0.93612 0.88471 0.88409 0.85798 0.82472 0.83910 0.87217 0.88355 0.85593 0.84600 0.93646 0.89122 0.84559 0.86928 0.92584 0.76994 0.91249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.41 8.11 71.98 0.58 -1.83 16 2 C -0.09 -1.37 3.65 -9.89 -0.04 -1.40 16 3 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 4 C 0.11 1.34 5.60 86.53 0.48 1.83 16 5 N -0.62 -12.98 3.30 -807.94 -2.67 -15.65 16 6 C 0.54 13.79 5.60 87.66 0.49 14.28 16 7 O -0.58 -20.41 13.94 -3.03 -0.04 -20.46 16 8 C -0.05 -0.83 2.24 -13.29 -0.03 -0.86 16 9 C -0.13 -1.64 7.53 24.48 0.18 -1.46 16 10 C -0.12 -1.69 9.58 22.99 0.22 -1.47 16 11 C -0.15 -2.98 8.53 22.89 0.20 -2.79 16 12 C -0.10 -2.24 7.35 22.89 0.17 -2.07 16 13 C -0.12 -2.63 9.09 23.00 0.21 -2.42 16 14 C -0.14 -2.76 8.77 24.49 0.21 -2.54 16 15 C 0.08 1.73 6.49 86.53 0.56 2.29 16 16 C 0.08 1.57 3.37 45.82 0.15 1.73 16 17 H 0.11 1.95 7.82 -2.38 -0.02 1.93 16 18 N -0.66 -20.57 4.13 -490.89 -2.03 -22.60 16 19 C 0.06 2.17 6.02 85.56 0.51 2.69 16 20 C 0.44 21.48 7.82 87.66 0.69 22.17 16 21 O -0.62 -35.77 15.78 -3.08 -0.05 -35.82 16 22 N -0.57 -30.36 5.29 -306.99 -1.62 -31.98 16 23 C -0.34 -19.62 9.68 84.04 0.81 -18.81 16 24 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 25 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 26 N -0.92 -50.74 13.05 21.66 0.28 -50.46 16 27 Si 0.99 44.02 29.55 68.60 2.03 46.04 16 28 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 29 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 30 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 31 H 0.03 0.72 7.49 -2.39 -0.02 0.71 16 32 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.04 1.19 7.90 -2.39 -0.02 1.17 16 34 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.10 0.93 6.63 -2.39 -0.02 0.92 16 36 H 0.12 1.79 7.95 -2.39 -0.02 1.77 16 37 H 0.16 0.87 8.06 -2.91 -0.02 0.85 16 38 H 0.14 1.29 8.06 -2.91 -0.02 1.27 16 39 H 0.11 2.05 8.06 -2.91 -0.02 2.02 16 40 H 0.10 2.41 8.06 -2.91 -0.02 2.39 16 41 H 0.13 2.34 8.06 -2.91 -0.02 2.31 16 42 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 43 H 0.04 1.37 7.73 -2.39 -0.02 1.36 16 44 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.34 12.45 7.70 -89.69 -0.69 11.76 16 46 H 0.11 3.37 8.07 -2.39 -0.02 3.35 16 47 H 0.06 1.82 8.12 -2.38 -0.02 1.80 16 48 H 0.40 19.87 7.90 -92.71 -0.73 19.14 16 49 H 0.28 14.35 8.31 -92.71 -0.77 13.58 16 Total: -1.00 -78.18 394.98 1.32 -76.86 By element: Atomic # 1 Polarization: 45.41 SS G_CDS: -0.46 Total: 44.95 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: 5.88 Total: 9.11 kcal Atomic # 7 Polarization: -114.65 SS G_CDS: -6.04 Total: -120.69 kcal Atomic # 8 Polarization: -56.18 SS G_CDS: -0.09 Total: -56.27 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.04 kcal Total: -78.18 1.32 -76.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484890554.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.218 kcal (2) G-P(sol) polarization free energy of solvation -78.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds