Wall clock time and date at job start Wed Apr 1 2020 02:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09009 * 110.30337 * 2 1 4 4 C 1.54389 * 110.34686 * 122.28693 * 2 1 3 5 5 N 1.48143 * 104.62009 * 142.73715 * 4 2 1 6 6 C 1.34769 * 127.84017 * 140.40948 * 5 4 2 7 7 O 1.21288 * 120.00115 * 180.02562 * 6 5 4 8 8 C 1.50699 * 119.99980 * 0.02635 * 6 5 4 9 9 C 1.50285 * 109.47066 * 300.03029 * 8 6 5 10 10 C 1.32329 * 121.59756 * 303.32497 * 9 8 6 11 11 C 1.45198 * 123.00448 * 1.01642 * 10 9 8 12 12 C 1.32945 * 125.19832 * 319.52176 * 11 10 9 13 13 C 1.45196 * 125.19709 * 0.02984 * 12 11 10 14 14 C 1.32296 * 123.02921 * 40.42526 * 13 12 11 15 15 C 1.48425 * 104.33894 * 320.39447 * 5 4 2 16 16 C 1.54285 * 110.34131 * 237.82759 * 2 1 3 17 17 H 1.08994 * 110.34254 * 0.10240 * 16 2 1 18 18 N 1.46898 * 110.34096 * 122.25698 * 16 2 1 19 19 C 1.46906 * 110.99888 * 203.52333 * 18 16 2 20 20 C 1.50699 * 109.47140 * 180.02562 * 19 18 16 21 21 O 1.21297 * 119.99980 * 359.97438 * 20 19 18 22 22 N 1.34779 * 120.00037 * 180.02562 * 20 19 18 23 23 C 1.37097 * 119.99944 * 180.02562 * 22 20 19 24 24 H 1.08003 * 120.00055 * 359.97438 * 23 22 20 25 25 C 1.38948 * 119.99682 * 179.97438 * 23 22 20 26 26 N 1.31408 * 120.00492 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 119.99897 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.46948 * 359.97438 * 27 25 23 29 29 H 1.48497 * 109.47378 * 120.00054 * 27 25 23 30 30 H 1.48501 * 109.47174 * 239.99969 * 27 25 23 31 31 H 1.08997 * 109.46822 * 182.17529 * 1 2 3 32 32 H 1.09002 * 109.46795 * 302.16966 * 1 2 3 33 33 H 1.08999 * 109.46883 * 62.17287 * 1 2 3 34 34 H 1.08997 * 110.41044 * 261.52692 * 4 2 1 35 35 H 1.09000 * 110.40409 * 23.95566 * 4 2 1 36 36 H 1.09004 * 109.46467 * 60.01026 * 8 6 5 37 37 H 1.07995 * 119.20651 * 123.31374 * 9 8 6 38 38 H 1.07998 * 118.50859 * 181.02240 * 10 9 8 39 39 H 1.07999 * 117.40441 * 139.55125 * 11 10 9 40 40 H 1.08002 * 117.39681 * 180.02562 * 12 11 10 41 41 H 1.08011 * 118.48567 * 220.45486 * 13 12 11 42 42 H 1.08001 * 119.20212 * 179.04813 * 14 13 12 43 43 H 1.08999 * 110.44663 * 280.87449 * 15 5 4 44 44 H 1.08990 * 110.49660 * 158.35285 * 15 5 4 45 45 H 1.00902 * 111.00533 * 79.56740 * 18 16 2 46 46 H 1.09000 * 109.47033 * 300.00113 * 19 18 16 47 47 H 1.09001 * 109.46544 * 60.00058 * 19 18 16 48 48 H 0.96996 * 119.99844 * 359.97438 * 22 20 19 49 49 H 0.97001 * 120.00876 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9083 1.0224 0.0000 4 6 2.0668 -0.7732 1.2237 5 7 3.2665 -1.4823 0.7212 6 6 4.4426 -1.6676 1.3528 7 8 5.3370 -2.2750 0.8032 8 6 4.6463 -1.1199 2.7419 9 6 4.4755 0.3731 2.7218 10 6 5.2026 1.1435 1.9288 11 6 6.1963 0.6181 1.0096 12 6 7.0388 -0.3748 1.2775 13 6 7.1056 -1.0998 2.5337 14 6 6.0311 -1.4601 3.2164 15 6 2.8797 -1.9431 -0.6357 16 6 2.0664 -0.7703 -1.2245 17 1 1.2398 -1.1471 -1.8269 18 7 2.9331 0.0968 -2.0337 19 6 3.0008 -0.3756 -3.4231 20 6 3.8974 0.5361 -4.2205 21 8 4.4274 1.4863 -3.6844 22 7 4.1094 0.2964 -5.5298 23 6 4.9254 1.1255 -6.2551 24 1 5.3980 1.9711 -5.7775 25 6 5.1444 0.8780 -7.6047 26 7 4.5698 -0.1511 -8.1857 27 14 6.2568 2.0073 -8.5929 28 1 6.7777 3.0836 -7.7123 29 1 7.3924 1.2252 -9.1442 30 1 5.4843 2.6113 -9.7081 31 1 -0.3633 -1.0269 0.0390 32 1 -0.3633 0.5472 0.8699 33 1 -0.3633 0.4797 -0.9088 34 1 2.3401 -0.0815 2.0205 35 1 1.3236 -1.4876 1.5778 36 1 3.9126 -1.5603 3.4171 37 1 3.7414 0.8283 3.3700 38 1 5.0502 2.2120 1.9669 39 1 6.2560 1.0700 0.0306 40 1 7.7284 -0.6652 0.4987 41 1 8.0773 -1.3565 2.9294 42 1 6.1522 -2.0117 4.1370 43 1 2.2626 -2.8393 -0.5720 44 1 3.7658 -2.1329 -1.2413 45 1 3.8552 0.1649 -1.6296 46 1 3.4029 -1.3886 -3.4432 47 1 2.0008 -0.3729 -3.8568 48 1 3.6853 -0.4633 -5.9586 49 1 4.7224 -0.3238 -9.1280 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484890556.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:52 Heat of formation + Delta-G solvation = -5.099299 kcal Electronic energy + Delta-G solvation = -31046.004140 eV Core-core repulsion = 26974.247716 eV Total energy + Delta-G solvation = -4071.756424 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.74465 -38.99268 -37.99767 -36.86490 -34.60111 -33.76598 -32.81747 -32.35295 -32.17395 -31.19044 -28.91047 -26.93519 -26.48072 -25.68520 -24.14319 -23.63784 -22.55412 -20.49103 -20.07308 -19.16989 -18.50386 -17.85394 -17.63971 -17.33909 -16.50746 -16.13210 -15.91727 -15.50317 -15.06591 -14.78248 -14.45688 -14.38676 -14.16562 -13.93523 -13.79043 -13.45490 -13.27335 -12.84856 -12.70523 -12.62872 -12.56712 -12.29403 -12.11969 -11.99590 -11.90339 -11.57332 -11.53200 -11.10803 -11.05407 -11.00139 -10.97615 -10.81677 -10.32862 -10.28393 -10.20513 -9.91932 -9.50017 -9.31857 -8.92048 -8.41592 -8.24830 -7.99303 -7.92849 -6.39788 -3.80406 1.20366 1.89960 2.61349 2.92575 3.17815 3.20229 3.28207 3.35582 3.93175 4.08453 4.29560 4.36146 4.44032 4.60378 4.71261 4.79125 4.92579 4.96128 5.00724 5.06723 5.11316 5.18053 5.25394 5.29421 5.30605 5.37641 5.39269 5.52009 5.59254 5.60221 5.64654 5.79558 5.88564 5.92424 5.93886 6.00877 6.03076 6.08792 6.20852 6.33993 6.36144 6.43798 6.68463 6.78128 6.84412 7.25297 7.51653 7.57276 7.65465 8.08563 8.17955 8.63398 9.20068 9.56565 10.08009 10.78081 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012222 B = 0.002941 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2290.491555 B = 9517.933326 C =10831.346864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.097 4.097 3 H 0.096 0.904 4 C 0.101 3.899 5 N -0.617 5.617 6 C 0.543 3.457 7 O -0.527 6.527 8 C -0.038 4.038 9 C -0.157 4.157 10 C -0.094 4.094 11 C -0.142 4.142 12 C -0.082 4.082 13 C -0.095 4.095 14 C -0.138 4.138 15 C 0.074 3.926 16 C 0.078 3.922 17 H 0.094 0.906 18 N -0.655 5.655 19 C 0.048 3.952 20 C 0.442 3.558 21 O -0.583 6.583 22 N -0.564 5.564 23 C -0.298 4.298 24 H 0.103 0.897 25 C 0.022 3.978 26 N -0.902 5.902 27 Si 0.929 3.071 28 H -0.268 1.268 29 H -0.282 1.282 30 H -0.281 1.281 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.102 0.898 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.113 0.887 41 H 0.116 0.884 42 H 0.118 0.882 43 H 0.071 0.929 44 H 0.082 0.918 45 H 0.352 0.648 46 H 0.043 0.957 47 H 0.087 0.913 48 H 0.392 0.608 49 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.695 -4.182 23.458 24.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.117 4.117 3 H 0.114 0.886 4 C -0.022 4.022 5 N -0.352 5.352 6 C 0.332 3.668 7 O -0.403 6.403 8 C -0.059 4.059 9 C -0.175 4.175 10 C -0.112 4.112 11 C -0.160 4.160 12 C -0.100 4.100 13 C -0.113 4.113 14 C -0.156 4.156 15 C -0.051 4.051 16 C -0.034 4.034 17 H 0.112 0.888 18 N -0.286 5.286 19 C -0.085 4.085 20 C 0.227 3.773 21 O -0.467 6.467 22 N -0.201 5.201 23 C -0.427 4.427 24 H 0.121 0.879 25 C -0.180 4.180 26 N -0.543 5.543 27 Si 0.756 3.244 28 H -0.192 1.192 29 H -0.208 1.208 30 H -0.208 1.208 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.101 0.899 35 H 0.088 0.912 36 H 0.120 0.880 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.131 0.869 41 H 0.134 0.866 42 H 0.136 0.864 43 H 0.089 0.911 44 H 0.100 0.900 45 H 0.172 0.828 46 H 0.061 0.939 47 H 0.105 0.895 48 H 0.225 0.775 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.194 -3.484 23.227 24.290 hybrid contribution 0.760 -0.797 -0.851 1.392 sum -5.434 -4.281 22.376 23.421 Atomic orbital electron populations 1.21784 0.93917 1.01659 1.02368 1.22143 0.95852 1.00892 0.92782 0.88601 1.22635 0.86654 0.95476 0.97472 1.48883 1.13052 1.55970 1.17254 1.20104 0.80216 0.79192 0.87297 1.90724 1.40640 1.41715 1.67208 1.19113 0.97562 0.94750 0.94496 1.22776 1.01149 0.92572 1.01017 1.21169 0.95349 0.99771 0.94881 1.21152 0.96554 0.98952 0.99343 1.21059 0.98901 0.94088 0.95947 1.21051 0.98349 0.97706 0.94220 1.22652 0.91702 1.00863 1.00370 1.23202 0.99900 0.97857 0.84131 1.22672 0.95960 0.90585 0.94191 0.88837 1.60240 1.18021 1.49480 1.00897 1.21738 1.00572 0.96474 0.89685 1.19789 0.86220 0.88053 0.83209 1.90521 1.53746 1.32009 1.70394 1.41862 1.43183 1.27539 1.07489 1.19746 1.23046 1.08628 0.91314 0.87908 1.25254 0.98347 0.97321 0.97041 1.69616 1.44042 1.28085 1.12599 0.85811 0.79419 0.79829 0.79358 1.19224 1.20772 1.20753 0.92728 0.92476 0.91759 0.89878 0.91248 0.88009 0.86123 0.86235 0.86343 0.86858 0.86618 0.86402 0.91128 0.89986 0.82758 0.93920 0.89515 0.77491 0.91950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 8.92 37.16 0.33 -0.73 16 2 C -0.10 -0.93 3.45 -89.22 -0.31 -1.24 16 3 H 0.10 1.11 7.95 -51.92 -0.41 0.69 16 4 C 0.10 0.86 6.27 -2.41 -0.02 0.84 16 5 N -0.62 -7.16 3.31 -169.08 -0.56 -7.72 16 6 C 0.54 7.21 5.60 -10.99 -0.06 7.15 16 7 O -0.53 -8.98 13.94 5.55 0.08 -8.90 16 8 C -0.04 -0.39 2.46 -94.48 -0.23 -0.62 16 9 C -0.16 -1.46 6.83 -36.44 -0.25 -1.71 16 10 C -0.09 -1.05 9.58 -38.75 -0.37 -1.42 16 11 C -0.14 -1.92 8.53 -38.65 -0.33 -2.25 16 12 C -0.08 -1.11 7.35 -38.65 -0.28 -1.39 16 13 C -0.10 -1.11 9.09 -38.75 -0.35 -1.47 16 14 C -0.14 -1.44 8.78 -36.43 -0.32 -1.76 16 15 C 0.07 0.89 6.49 -2.25 -0.01 0.88 16 16 C 0.08 0.92 3.02 -66.31 -0.20 0.72 16 17 H 0.09 1.00 7.41 -51.93 -0.38 0.62 16 18 N -0.65 -10.53 5.79 -106.51 -0.62 -11.14 16 19 C 0.05 0.85 6.01 -4.97 -0.03 0.82 16 20 C 0.44 10.57 7.82 -10.99 -0.09 10.49 16 21 O -0.58 -15.99 15.78 5.54 0.09 -15.90 16 22 N -0.56 -14.50 5.29 -10.96 -0.06 -14.56 16 23 C -0.30 -8.42 9.68 -14.93 -0.14 -8.57 16 24 H 0.10 3.06 7.16 -52.48 -0.38 2.68 16 25 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 26 N -0.90 -24.83 13.05 55.50 0.72 -24.10 16 27 Si 0.93 21.34 29.55 -169.99 -5.02 16.32 16 28 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 29 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 30 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 31 H 0.05 0.36 8.10 -51.93 -0.42 -0.06 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.62 5.54 -51.93 -0.29 0.33 16 35 H 0.07 0.48 7.83 -51.93 -0.41 0.07 16 36 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.12 0.80 7.86 -52.49 -0.41 0.39 16 38 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 39 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 40 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 41 H 0.12 1.12 8.06 -52.48 -0.42 0.69 16 42 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.08 1.22 7.60 -51.93 -0.39 0.83 16 45 H 0.35 6.37 8.16 -39.29 -0.32 6.05 16 46 H 0.04 0.71 7.96 -51.93 -0.41 0.29 16 47 H 0.09 1.39 8.07 -51.93 -0.42 0.97 16 48 H 0.39 9.64 7.90 -40.82 -0.32 9.31 16 49 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 396.11 15.07 5.97 5.97 Total: -1.00 -33.73 396.11 -9.67 -43.41 By element: Atomic # 1 Polarization: 23.92 SS G_CDS: -7.51 Total: 16.41 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: -2.76 Total: 0.23 kcal Atomic # 7 Polarization: -57.01 SS G_CDS: -0.51 Total: -57.52 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: 0.16 Total: -24.81 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.73 -9.67 -43.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484890556.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.306 kcal (2) G-P(sol) polarization free energy of solvation -33.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds