Wall clock time and date at job start Wed Apr 1 2020 02:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09009 * 110.30337 * 2 1 4 4 C 1.54389 * 110.34686 * 122.28693 * 2 1 3 5 5 N 1.48143 * 104.62009 * 142.73715 * 4 2 1 6 6 C 1.34769 * 127.84017 * 140.40948 * 5 4 2 7 7 O 1.21288 * 120.00115 * 180.02562 * 6 5 4 8 8 C 1.50699 * 119.99980 * 0.02635 * 6 5 4 9 9 C 1.50285 * 109.47066 * 300.03029 * 8 6 5 10 10 C 1.32329 * 121.59756 * 303.32497 * 9 8 6 11 11 C 1.45198 * 123.00448 * 1.01642 * 10 9 8 12 12 C 1.32945 * 125.19832 * 319.52176 * 11 10 9 13 13 C 1.45196 * 125.19709 * 0.02984 * 12 11 10 14 14 C 1.32296 * 123.02921 * 40.42526 * 13 12 11 15 15 C 1.48425 * 104.33894 * 320.39447 * 5 4 2 16 16 C 1.54285 * 110.34131 * 237.82759 * 2 1 3 17 17 H 1.08994 * 110.34254 * 0.10240 * 16 2 1 18 18 N 1.46898 * 110.34096 * 122.25698 * 16 2 1 19 19 C 1.46906 * 110.99888 * 203.52333 * 18 16 2 20 20 C 1.50699 * 109.47140 * 180.02562 * 19 18 16 21 21 O 1.21297 * 119.99980 * 359.97438 * 20 19 18 22 22 N 1.34779 * 120.00037 * 180.02562 * 20 19 18 23 23 C 1.37097 * 119.99944 * 180.02562 * 22 20 19 24 24 H 1.08003 * 120.00055 * 359.97438 * 23 22 20 25 25 C 1.38948 * 119.99682 * 179.97438 * 23 22 20 26 26 N 1.31408 * 120.00492 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 119.99897 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.46948 * 359.97438 * 27 25 23 29 29 H 1.48497 * 109.47378 * 120.00054 * 27 25 23 30 30 H 1.48501 * 109.47174 * 239.99969 * 27 25 23 31 31 H 1.08997 * 109.46822 * 182.17529 * 1 2 3 32 32 H 1.09002 * 109.46795 * 302.16966 * 1 2 3 33 33 H 1.08999 * 109.46883 * 62.17287 * 1 2 3 34 34 H 1.08997 * 110.41044 * 261.52692 * 4 2 1 35 35 H 1.09000 * 110.40409 * 23.95566 * 4 2 1 36 36 H 1.09004 * 109.46467 * 60.01026 * 8 6 5 37 37 H 1.07995 * 119.20651 * 123.31374 * 9 8 6 38 38 H 1.07998 * 118.50859 * 181.02240 * 10 9 8 39 39 H 1.07999 * 117.40441 * 139.55125 * 11 10 9 40 40 H 1.08002 * 117.39681 * 180.02562 * 12 11 10 41 41 H 1.08011 * 118.48567 * 220.45486 * 13 12 11 42 42 H 1.08001 * 119.20212 * 179.04813 * 14 13 12 43 43 H 1.08999 * 110.44663 * 280.87449 * 15 5 4 44 44 H 1.08990 * 110.49660 * 158.35285 * 15 5 4 45 45 H 1.00902 * 111.00533 * 79.56740 * 18 16 2 46 46 H 1.09000 * 109.47033 * 300.00113 * 19 18 16 47 47 H 1.09001 * 109.46544 * 60.00058 * 19 18 16 48 48 H 0.96996 * 119.99844 * 359.97438 * 22 20 19 49 49 H 0.97001 * 120.00876 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9083 1.0224 0.0000 4 6 2.0668 -0.7732 1.2237 5 7 3.2665 -1.4823 0.7212 6 6 4.4426 -1.6676 1.3528 7 8 5.3370 -2.2750 0.8032 8 6 4.6463 -1.1199 2.7419 9 6 4.4755 0.3731 2.7218 10 6 5.2026 1.1435 1.9288 11 6 6.1963 0.6181 1.0096 12 6 7.0388 -0.3748 1.2775 13 6 7.1056 -1.0998 2.5337 14 6 6.0311 -1.4601 3.2164 15 6 2.8797 -1.9431 -0.6357 16 6 2.0664 -0.7703 -1.2245 17 1 1.2398 -1.1471 -1.8269 18 7 2.9331 0.0968 -2.0337 19 6 3.0008 -0.3756 -3.4231 20 6 3.8974 0.5361 -4.2205 21 8 4.4274 1.4863 -3.6844 22 7 4.1094 0.2964 -5.5298 23 6 4.9254 1.1255 -6.2551 24 1 5.3980 1.9711 -5.7775 25 6 5.1444 0.8780 -7.6047 26 7 4.5698 -0.1511 -8.1857 27 14 6.2568 2.0073 -8.5929 28 1 6.7777 3.0836 -7.7123 29 1 7.3924 1.2252 -9.1442 30 1 5.4843 2.6113 -9.7081 31 1 -0.3633 -1.0269 0.0390 32 1 -0.3633 0.5472 0.8699 33 1 -0.3633 0.4797 -0.9088 34 1 2.3401 -0.0815 2.0205 35 1 1.3236 -1.4876 1.5778 36 1 3.9126 -1.5603 3.4171 37 1 3.7414 0.8283 3.3700 38 1 5.0502 2.2120 1.9669 39 1 6.2560 1.0700 0.0306 40 1 7.7284 -0.6652 0.4987 41 1 8.0773 -1.3565 2.9294 42 1 6.1522 -2.0117 4.1370 43 1 2.2626 -2.8393 -0.5720 44 1 3.7658 -2.1329 -1.2413 45 1 3.8552 0.1649 -1.6296 46 1 3.4029 -1.3886 -3.4432 47 1 2.0008 -0.3729 -3.8568 48 1 3.6853 -0.4633 -5.9586 49 1 4.7224 -0.3238 -9.1280 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484890556.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:51 Heat of formation + Delta-G solvation = -28.802550 kcal Electronic energy + Delta-G solvation = -31047.031990 eV Core-core repulsion = 26974.247716 eV Total energy + Delta-G solvation = -4072.784274 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.67250 -40.31623 -39.54145 -37.87557 -36.19075 -35.48117 -33.76418 -33.28026 -33.22427 -33.01931 -30.05879 -28.14976 -27.45246 -26.79298 -25.78874 -24.52746 -23.59070 -21.48811 -21.11841 -20.81338 -19.93425 -19.38028 -18.56784 -18.18576 -17.90178 -17.27224 -17.10672 -16.68955 -16.46165 -16.24661 -15.98793 -15.67892 -15.28485 -15.16918 -14.95782 -14.79578 -14.26496 -14.05468 -13.75454 -13.62576 -13.53587 -13.48751 -13.33045 -13.15736 -13.04878 -12.87245 -12.84263 -12.71555 -12.44869 -12.15235 -11.96882 -11.86204 -11.79537 -11.61853 -11.54922 -11.20553 -10.91505 -10.38994 -10.17289 -10.05221 -9.88392 -9.27341 -9.12760 -8.50118 -5.99056 0.30053 1.04138 1.33479 1.38505 1.53014 1.66295 2.00761 2.05820 2.25808 2.26609 2.87362 3.16649 3.41475 3.56191 3.62124 3.78622 3.88213 3.99170 4.08130 4.16198 4.17401 4.19822 4.27814 4.30133 4.39608 4.45001 4.49939 4.53591 4.58163 4.70421 4.72996 4.74056 4.85017 4.97634 4.98990 5.00624 5.20939 5.23092 5.37205 5.39844 5.49689 5.52294 5.64601 5.81172 5.84696 5.88488 5.89572 6.10916 6.25455 6.56342 6.63151 7.08990 7.22279 7.51886 8.07513 8.67586 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012222 B = 0.002941 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2290.491555 B = 9517.933326 C =10831.346864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.091 4.091 3 H 0.074 0.926 4 C 0.103 3.897 5 N -0.619 5.619 6 C 0.533 3.467 7 O -0.578 6.578 8 C -0.043 4.043 9 C -0.130 4.130 10 C -0.121 4.121 11 C -0.152 4.152 12 C -0.092 4.092 13 C -0.121 4.121 14 C -0.127 4.127 15 C 0.075 3.925 16 C 0.077 3.923 17 H 0.111 0.889 18 N -0.664 5.664 19 C 0.063 3.937 20 C 0.436 3.564 21 O -0.624 6.624 22 N -0.572 5.572 23 C -0.335 4.335 24 H 0.077 0.923 25 C -0.012 4.012 26 N -0.919 5.919 27 Si 0.993 3.007 28 H -0.275 1.275 29 H -0.271 1.271 30 H -0.267 1.267 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.051 0.949 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.142 0.858 37 H 0.163 0.837 38 H 0.130 0.870 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.131 0.869 42 H 0.151 0.849 43 H 0.095 0.905 44 H 0.044 0.956 45 H 0.335 0.665 46 H 0.056 0.944 47 H 0.113 0.887 48 H 0.396 0.604 49 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.365 -4.905 25.874 27.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.111 4.111 3 H 0.092 0.908 4 C -0.019 4.019 5 N -0.352 5.352 6 C 0.324 3.676 7 O -0.457 6.457 8 C -0.064 4.064 9 C -0.148 4.148 10 C -0.138 4.138 11 C -0.171 4.171 12 C -0.111 4.111 13 C -0.138 4.138 14 C -0.145 4.145 15 C -0.050 4.050 16 C -0.033 4.033 17 H 0.129 0.871 18 N -0.294 5.294 19 C -0.069 4.069 20 C 0.224 3.776 21 O -0.510 6.510 22 N -0.210 5.210 23 C -0.464 4.464 24 H 0.095 0.905 25 C -0.212 4.212 26 N -0.560 5.560 27 Si 0.816 3.184 28 H -0.199 1.199 29 H -0.196 1.196 30 H -0.192 1.192 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.070 0.930 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.160 0.840 37 H 0.180 0.820 38 H 0.148 0.852 39 H 0.102 0.898 40 H 0.107 0.893 41 H 0.148 0.852 42 H 0.168 0.832 43 H 0.113 0.887 44 H 0.063 0.937 45 H 0.154 0.846 46 H 0.074 0.926 47 H 0.131 0.869 48 H 0.230 0.770 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.929 -4.221 25.646 27.482 hybrid contribution 1.552 -0.613 -1.614 2.321 sum -7.378 -4.833 24.032 25.599 Atomic orbital electron populations 1.21747 0.91737 1.02956 1.02647 1.22100 0.97456 0.99462 0.92093 0.90758 1.22872 0.85814 0.96124 0.97100 1.49006 1.13634 1.55614 1.16918 1.20756 0.79869 0.78630 0.88392 1.90707 1.42277 1.44113 1.68610 1.19353 0.98555 0.95310 0.93132 1.23115 1.00125 0.91884 0.99643 1.21210 0.96007 1.00697 0.95931 1.21090 0.98053 0.99136 0.98785 1.21072 0.98488 0.94752 0.96750 1.21170 0.99990 0.98921 0.93759 1.23071 0.91333 0.99282 1.00820 1.23146 0.98630 0.98900 0.84336 1.22870 0.95331 0.90348 0.94798 0.87094 1.60311 1.17527 1.51165 1.00428 1.21605 1.00124 0.95169 0.90015 1.20893 0.85805 0.88056 0.82867 1.90489 1.55336 1.34080 1.71105 1.41924 1.43311 1.27518 1.08201 1.19686 1.25005 1.09256 0.92468 0.90545 1.26043 0.99230 0.98627 0.97306 1.69671 1.44368 1.28761 1.13230 0.84878 0.77856 0.77838 0.77803 1.19931 1.19592 1.19242 0.90999 0.90650 0.92997 0.88145 0.88129 0.84004 0.81973 0.85218 0.89811 0.89336 0.85159 0.83167 0.88717 0.93738 0.84637 0.92611 0.86950 0.76985 0.91231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.52 8.92 71.98 0.64 -0.88 16 2 C -0.09 -1.53 3.45 -9.89 -0.03 -1.56 16 3 H 0.07 1.61 7.95 -2.38 -0.02 1.59 16 4 C 0.10 1.35 6.27 86.53 0.54 1.89 16 5 N -0.62 -13.29 3.31 -807.25 -2.67 -15.96 16 6 C 0.53 13.65 5.60 87.66 0.49 14.14 16 7 O -0.58 -20.35 13.94 -3.05 -0.04 -20.39 16 8 C -0.04 -0.73 2.46 -13.29 -0.03 -0.77 16 9 C -0.13 -2.02 6.83 24.48 0.17 -1.86 16 10 C -0.12 -2.66 9.58 22.98 0.22 -2.44 16 11 C -0.15 -4.54 8.53 22.89 0.20 -4.34 16 12 C -0.09 -2.75 7.35 22.89 0.17 -2.59 16 13 C -0.12 -2.84 9.09 22.99 0.21 -2.63 16 14 C -0.13 -2.38 8.78 24.49 0.21 -2.17 16 15 C 0.07 1.74 6.49 86.48 0.56 2.30 16 16 C 0.08 1.72 3.02 45.82 0.14 1.86 16 17 H 0.11 2.10 7.41 -2.39 -0.02 2.08 16 18 N -0.66 -21.79 5.79 -490.89 -2.84 -24.63 16 19 C 0.06 2.27 6.01 85.56 0.51 2.79 16 20 C 0.44 21.80 7.82 87.66 0.69 22.49 16 21 O -0.62 -36.26 15.78 -3.08 -0.05 -36.30 16 22 N -0.57 -30.58 5.29 -306.98 -1.62 -32.20 16 23 C -0.33 -19.71 9.68 84.04 0.81 -18.89 16 24 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 25 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 26 N -0.92 -50.77 13.05 21.66 0.28 -50.49 16 27 Si 0.99 44.21 29.55 68.60 2.03 46.24 16 28 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 29 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 30 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 31 H 0.07 0.60 8.10 -2.39 -0.02 0.59 16 32 H 0.07 0.62 8.14 -2.39 -0.02 0.61 16 33 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.10 0.99 5.54 -2.39 -0.01 0.98 16 35 H 0.10 0.80 7.83 -2.39 -0.02 0.79 16 36 H 0.14 1.37 8.14 -2.38 -0.02 1.35 16 37 H 0.16 1.24 7.86 -2.91 -0.02 1.22 16 38 H 0.13 2.51 8.06 -2.91 -0.02 2.48 16 39 H 0.08 2.94 8.06 -2.91 -0.02 2.92 16 40 H 0.09 2.91 8.06 -2.91 -0.02 2.88 16 41 H 0.13 2.53 8.06 -2.90 -0.02 2.51 16 42 H 0.15 1.82 8.06 -2.91 -0.02 1.79 16 43 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.04 1.38 7.60 -2.39 -0.02 1.37 16 45 H 0.34 12.95 8.16 -89.69 -0.73 12.21 16 46 H 0.06 1.87 7.96 -2.39 -0.02 1.85 16 47 H 0.11 3.48 8.07 -2.39 -0.02 3.46 16 48 H 0.40 20.05 7.90 -92.71 -0.73 19.32 16 49 H 0.28 14.30 8.31 -92.71 -0.77 13.53 16 Total: -1.00 -79.48 396.11 0.55 -78.93 By element: Atomic # 1 Polarization: 48.16 SS G_CDS: -0.50 Total: 47.66 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: 5.96 Total: 7.14 kcal Atomic # 7 Polarization: -116.42 SS G_CDS: -6.85 Total: -123.27 kcal Atomic # 8 Polarization: -56.61 SS G_CDS: -0.09 Total: -56.70 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -79.48 0.55 -78.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484890556.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.130 kcal (2) G-P(sol) polarization free energy of solvation -79.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds