Wall clock time and date at job start Wed Apr 1 2020 03:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 110.88553 * 2 1 4 4 C 1.55127 * 110.90746 * 124.10387 * 2 1 3 5 5 N 1.47419 * 104.72617 * 155.27547 * 4 2 1 6 6 C 1.34770 * 125.65238 * 155.81340 * 5 4 2 7 7 O 1.21279 * 119.99867 * 359.71797 * 6 5 4 8 8 C 1.50706 * 120.00286 * 179.71407 * 6 5 4 9 9 N 1.46503 * 109.47206 * 180.02562 * 8 6 5 10 10 C 1.34773 * 120.00012 * 180.02562 * 9 8 6 11 11 O 1.21285 * 120.00118 * 359.97438 * 10 9 8 12 12 C 1.50691 * 120.00066 * 180.02562 * 10 9 8 13 13 C 1.50706 * 109.47260 * 179.97438 * 12 10 9 14 14 C 1.38238 * 119.99776 * 89.99759 * 13 12 10 15 15 C 1.38234 * 119.99693 * 179.97438 * 14 13 12 16 16 C 1.38234 * 120.00240 * 0.02562 * 15 14 13 17 17 C 1.38233 * 120.00037 * 0.26327 * 16 15 14 18 18 C 1.38234 * 120.00160 * 269.97976 * 13 12 10 19 19 C 1.47024 * 108.70058 * 335.54723 * 5 4 2 20 20 C 1.54324 * 107.27143 * 1.29072 * 19 5 4 21 21 H 1.09002 * 110.72039 * 140.55512 * 20 19 5 22 22 N 1.46497 * 110.71747 * 263.82802 * 20 19 5 23 23 C 1.36941 * 120.00150 * 273.54357 * 22 20 19 24 24 H 1.08002 * 119.99699 * 0.02562 * 23 22 20 25 25 C 1.38809 * 119.99977 * 180.02562 * 23 22 20 26 26 N 1.31616 * 120.00252 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 119.99790 * 180.02562 * 25 23 22 28 28 H 1.48505 * 109.47273 * 60.00138 * 27 25 23 29 29 H 1.48506 * 109.47333 * 180.02562 * 27 25 23 30 30 H 1.48507 * 109.47277 * 300.00075 * 27 25 23 31 31 H 1.09002 * 109.47191 * 183.87594 * 1 2 3 32 32 H 1.09002 * 109.47273 * 303.87225 * 1 2 3 33 33 H 1.09001 * 109.47294 * 63.87609 * 1 2 3 34 34 H 1.08998 * 110.49764 * 36.42886 * 4 2 1 35 35 H 1.09007 * 110.34130 * 274.04089 * 4 2 1 36 36 H 1.09001 * 109.46746 * 60.00265 * 8 6 5 37 37 H 1.08996 * 109.46909 * 300.00599 * 8 6 5 38 38 H 0.97002 * 119.99662 * 0.02562 * 9 8 6 39 39 H 1.09001 * 109.47232 * 60.00020 * 12 10 9 40 40 H 1.09004 * 109.47296 * 299.99447 * 12 10 9 41 41 H 1.08005 * 120.00103 * 359.97438 * 14 13 12 42 42 H 1.07999 * 119.99751 * 179.97438 * 15 14 13 43 43 H 1.08002 * 119.99744 * 179.97438 * 16 15 14 44 44 H 1.07998 * 120.00395 * 179.72811 * 17 16 15 45 45 H 1.08000 * 120.00005 * 359.97438 * 18 13 12 46 46 H 1.09002 * 109.88318 * 120.70467 * 19 5 4 47 47 H 1.08997 * 109.88742 * 241.87247 * 19 5 4 48 48 H 0.97006 * 120.00344 * 93.54810 * 22 20 19 49 49 H 0.97000 * 119.99830 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0836 -0.8125 1.1999 5 7 3.4271 -1.2435 0.7727 6 6 4.4476 -1.5623 1.5932 7 8 4.3008 -1.5013 2.7955 8 6 5.7712 -1.9948 1.0167 9 7 6.7072 -2.2841 2.1060 10 6 7.9615 -2.6904 1.8266 11 8 8.3152 -2.8171 0.6734 12 6 8.9241 -2.9885 2.9470 13 6 10.2477 -3.4209 2.3705 14 6 11.2216 -2.4797 2.0939 15 6 12.4359 -2.8763 1.5656 16 6 12.6760 -4.2141 1.3134 17 6 11.6999 -5.1546 1.5844 18 6 10.4879 -4.7587 2.1186 19 6 3.4674 -1.2739 -0.6966 20 6 2.0861 -0.8074 -1.2026 21 1 2.1921 -0.1691 -2.0798 22 7 1.2268 -1.9568 -1.4971 23 6 1.2814 -2.5552 -2.7276 24 1 1.9584 -2.1800 -3.4809 25 6 0.4668 -3.6439 -3.0067 26 7 -0.3585 -4.1008 -2.0889 27 14 0.5419 -4.4605 -4.6851 28 1 1.9160 -4.9692 -4.9271 29 1 -0.4199 -5.5912 -4.7290 30 1 0.1890 -3.4701 -5.7338 31 1 -0.3634 -1.0253 0.0695 32 1 -0.3634 0.5728 0.8533 33 1 -0.3634 0.4525 -0.9227 34 1 1.4524 -1.6788 1.3979 35 1 2.1515 -0.1812 2.0860 36 1 6.1741 -1.1966 0.3933 37 1 5.6289 -2.8909 0.4127 38 1 6.4242 -2.1831 3.0283 39 1 8.5210 -3.7873 3.5695 40 1 9.0661 -2.0929 3.5519 41 1 11.0339 -1.4344 2.2906 42 1 13.1967 -2.1410 1.3491 43 1 13.6246 -4.5239 0.9002 44 1 11.8858 -6.1993 1.3832 45 1 9.7273 -5.4941 2.3353 46 1 4.2425 -0.5993 -1.0603 47 1 3.6649 -2.2890 -1.0412 48 1 0.6190 -2.2940 -0.8204 49 1 -0.9274 -4.8618 -2.2839 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484908326.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:08 Heat of formation + Delta-G solvation = -31.520516 kcal Electronic energy + Delta-G solvation = -29326.712794 eV Core-core repulsion = 25253.810660 eV Total energy + Delta-G solvation = -4072.902134 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.42555 -39.80119 -38.80899 -37.72621 -34.49249 -34.03734 -33.13536 -32.50034 -31.08342 -30.56288 -29.16674 -27.82027 -27.25229 -25.35297 -23.89857 -22.78721 -22.28700 -21.83924 -20.49830 -19.40402 -19.24490 -17.79667 -17.32603 -17.05680 -16.43319 -16.24513 -16.03367 -15.69870 -15.30090 -15.04380 -14.66090 -14.56377 -14.30681 -13.82780 -13.62520 -13.58509 -13.32169 -13.26029 -13.00050 -12.91241 -12.63937 -12.51309 -12.16403 -12.09230 -11.96708 -11.63219 -11.35768 -11.20970 -11.18234 -10.95761 -10.81970 -10.53560 -10.32885 -10.10601 -10.00887 -9.87925 -9.69360 -9.26349 -9.09131 -9.05668 -8.92864 -8.40863 -7.12214 -5.88038 -3.18551 1.12002 1.23041 2.49303 2.65286 2.76222 3.36335 3.38407 3.43745 3.44137 3.67540 4.37924 4.48376 4.49795 4.58869 4.78669 4.80741 4.90424 4.98433 4.99738 5.09918 5.18339 5.22784 5.30596 5.31853 5.40308 5.43560 5.46681 5.58910 5.70319 5.78303 5.83212 5.83740 5.88136 6.10883 6.14864 6.19423 6.24823 6.26895 6.31382 6.31659 6.37343 6.44148 6.49441 6.68589 6.80021 6.86338 7.36204 7.60012 7.68607 8.07509 8.17828 8.29839 9.41858 9.95487 10.30101 11.33829 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011628 B = 0.002202 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.418960 B =12709.852856 C =14438.196164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.114 4.114 3 H 0.080 0.920 4 C 0.115 3.885 5 N -0.600 5.600 6 C 0.522 3.478 7 O -0.556 6.556 8 C 0.105 3.895 9 N -0.719 5.719 10 C 0.515 3.485 11 O -0.531 6.531 12 C -0.101 4.101 13 C -0.065 4.065 14 C -0.105 4.105 15 C -0.120 4.120 16 C -0.122 4.122 17 C -0.119 4.119 18 C -0.105 4.105 19 C 0.065 3.935 20 C 0.172 3.828 21 H 0.072 0.928 22 N -0.711 5.711 23 C -0.249 4.249 24 H 0.072 0.928 25 C -0.007 4.007 26 N -0.929 5.929 27 Si 0.908 3.092 28 H -0.285 1.285 29 H -0.291 1.291 30 H -0.285 1.285 31 H 0.069 0.931 32 H 0.045 0.955 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.411 0.589 39 H 0.105 0.895 40 H 0.104 0.896 41 H 0.120 0.880 42 H 0.121 0.879 43 H 0.120 0.880 44 H 0.121 0.879 45 H 0.120 0.880 46 H 0.059 0.941 47 H 0.081 0.919 48 H 0.387 0.613 49 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.068 5.478 11.128 22.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.134 4.134 3 H 0.098 0.902 4 C -0.007 4.007 5 N -0.332 5.332 6 C 0.309 3.691 7 O -0.436 6.436 8 C -0.022 4.022 9 N -0.374 5.374 10 C 0.301 3.699 11 O -0.407 6.407 12 C -0.141 4.141 13 C -0.066 4.066 14 C -0.123 4.123 15 C -0.138 4.138 16 C -0.140 4.140 17 C -0.137 4.137 18 C -0.123 4.123 19 C -0.061 4.061 20 C 0.060 3.940 21 H 0.090 0.910 22 N -0.353 5.353 23 C -0.380 4.380 24 H 0.090 0.910 25 C -0.204 4.204 26 N -0.576 5.576 27 Si 0.738 3.262 28 H -0.211 1.211 29 H -0.217 1.217 30 H -0.212 1.212 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.115 0.885 37 H 0.118 0.882 38 H 0.249 0.751 39 H 0.123 0.877 40 H 0.123 0.877 41 H 0.138 0.862 42 H 0.139 0.861 43 H 0.138 0.862 44 H 0.139 0.861 45 H 0.138 0.862 46 H 0.077 0.923 47 H 0.099 0.901 48 H 0.223 0.777 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 19.275 5.317 10.769 22.710 hybrid contribution -0.341 -0.671 -0.440 0.871 sum 18.933 4.646 10.330 22.063 Atomic orbital electron populations 1.21550 0.93274 1.03024 1.01063 1.22661 0.97054 0.98435 0.95219 0.90200 1.22353 0.82427 0.98499 0.97401 1.48365 1.11810 1.64857 1.08124 1.20032 0.85100 0.77614 0.86310 1.90650 1.83244 1.55195 1.14515 1.21015 0.87473 1.03254 0.90427 1.45737 1.11733 1.69234 1.10738 1.20511 0.81907 0.76813 0.90695 1.90756 1.76986 1.51330 1.21578 1.20658 0.92259 1.04228 0.96967 1.19272 0.94009 0.93717 0.99597 1.20984 0.93455 0.98966 0.98943 1.21097 0.97167 0.96095 0.99480 1.21146 0.99289 0.93363 1.00188 1.21114 0.93753 0.99610 0.99268 1.21012 0.97154 0.95300 0.98803 1.23429 1.01986 1.02654 0.78039 1.21200 0.88162 0.89911 0.94730 0.91018 1.42450 1.45356 1.32745 1.14716 1.19178 1.18670 1.09579 0.90557 0.90992 1.24752 0.98850 0.98836 0.97963 1.69641 1.27170 1.27522 1.33306 0.86274 0.77284 0.78909 0.83714 1.21148 1.21703 1.21161 0.91168 0.93622 0.92010 0.90968 0.91132 0.88532 0.88192 0.75135 0.87673 0.87732 0.86238 0.86118 0.86215 0.86063 0.86150 0.92300 0.90069 0.77721 0.93293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.96 8.85 37.16 0.33 -1.63 16 2 C -0.11 -1.67 3.53 -88.35 -0.31 -1.98 16 3 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 4 C 0.12 1.79 6.35 -2.41 -0.02 1.77 16 5 N -0.60 -9.44 3.32 -170.38 -0.57 -10.00 16 6 C 0.52 8.07 7.92 -10.99 -0.09 7.98 16 7 O -0.56 -9.65 15.92 5.56 0.09 -9.56 16 8 C 0.11 1.41 5.35 -5.19 -0.03 1.38 16 9 N -0.72 -8.56 5.53 -61.47 -0.34 -8.90 16 10 C 0.51 6.29 7.82 -10.99 -0.09 6.20 16 11 O -0.53 -8.60 16.03 5.55 0.09 -8.51 16 12 C -0.10 -0.87 5.83 -29.04 -0.17 -1.04 16 13 C -0.07 -0.67 4.37 -104.62 -0.46 -1.13 16 14 C -0.11 -1.03 9.70 -39.58 -0.38 -1.41 16 15 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 16 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 17 C -0.12 -1.12 10.05 -39.58 -0.40 -1.51 16 18 C -0.10 -1.06 9.70 -39.58 -0.38 -1.44 16 19 C 0.06 1.03 6.23 -3.06 -0.02 1.01 16 20 C 0.17 3.01 3.36 -66.10 -0.22 2.78 16 21 H 0.07 1.23 8.12 -51.93 -0.42 0.81 16 22 N -0.71 -15.97 4.61 -51.65 -0.24 -16.21 16 23 C -0.25 -6.37 9.98 -15.06 -0.15 -6.52 16 24 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 25 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 26 N -0.93 -26.70 13.06 55.49 0.72 -25.97 16 27 Si 0.91 21.52 29.55 -169.99 -5.02 16.50 16 28 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 29 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 30 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 31 H 0.07 1.23 6.37 -51.93 -0.33 0.90 16 32 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.07 1.24 7.99 -51.93 -0.41 0.82 16 35 H 0.07 1.04 8.04 -51.92 -0.42 0.62 16 36 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 38 H 0.41 4.44 7.44 -40.82 -0.30 4.14 16 39 H 0.11 0.70 8.08 -51.93 -0.42 0.28 16 40 H 0.10 0.65 8.09 -51.93 -0.42 0.23 16 41 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 42 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 43 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 44 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 45 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 46 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.08 1.48 8.04 -51.93 -0.42 1.06 16 48 H 0.39 9.36 6.10 -40.82 -0.25 9.11 16 49 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 407.54 15.07 6.14 6.14 Total: -1.00 -32.38 407.54 -9.99 -42.37 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: -7.59 Total: 12.93 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: -3.27 Total: 1.21 kcal Atomic # 7 Polarization: -60.66 SS G_CDS: -0.42 Total: -61.08 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: 0.18 Total: -18.06 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.38 -9.99 -42.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484908326.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.847 kcal (2) G-P(sol) polarization free energy of solvation -32.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds