Wall clock time and date at job start Wed Apr 1 2020 03:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 110.88553 * 2 1 4 4 C 1.55127 * 110.90746 * 124.10387 * 2 1 3 5 5 N 1.47419 * 104.72617 * 155.27547 * 4 2 1 6 6 C 1.34770 * 125.65238 * 155.81340 * 5 4 2 7 7 O 1.21279 * 119.99867 * 359.71797 * 6 5 4 8 8 C 1.50706 * 120.00286 * 179.71407 * 6 5 4 9 9 N 1.46503 * 109.47206 * 180.02562 * 8 6 5 10 10 C 1.34773 * 120.00012 * 180.02562 * 9 8 6 11 11 O 1.21285 * 120.00118 * 359.97438 * 10 9 8 12 12 C 1.50691 * 120.00066 * 180.02562 * 10 9 8 13 13 C 1.50706 * 109.47260 * 179.97438 * 12 10 9 14 14 C 1.38238 * 119.99776 * 89.99759 * 13 12 10 15 15 C 1.38234 * 119.99693 * 179.97438 * 14 13 12 16 16 C 1.38234 * 120.00240 * 0.02562 * 15 14 13 17 17 C 1.38233 * 120.00037 * 0.26327 * 16 15 14 18 18 C 1.38234 * 120.00160 * 269.97976 * 13 12 10 19 19 C 1.47024 * 108.70058 * 335.54723 * 5 4 2 20 20 C 1.54324 * 107.27143 * 1.29072 * 19 5 4 21 21 H 1.09002 * 110.72039 * 140.55512 * 20 19 5 22 22 N 1.46497 * 110.71747 * 263.82802 * 20 19 5 23 23 C 1.36941 * 120.00150 * 273.54357 * 22 20 19 24 24 H 1.08002 * 119.99699 * 0.02562 * 23 22 20 25 25 C 1.38809 * 119.99977 * 180.02562 * 23 22 20 26 26 N 1.31616 * 120.00252 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 119.99790 * 180.02562 * 25 23 22 28 28 H 1.48505 * 109.47273 * 60.00138 * 27 25 23 29 29 H 1.48506 * 109.47333 * 180.02562 * 27 25 23 30 30 H 1.48507 * 109.47277 * 300.00075 * 27 25 23 31 31 H 1.09002 * 109.47191 * 183.87594 * 1 2 3 32 32 H 1.09002 * 109.47273 * 303.87225 * 1 2 3 33 33 H 1.09001 * 109.47294 * 63.87609 * 1 2 3 34 34 H 1.08998 * 110.49764 * 36.42886 * 4 2 1 35 35 H 1.09007 * 110.34130 * 274.04089 * 4 2 1 36 36 H 1.09001 * 109.46746 * 60.00265 * 8 6 5 37 37 H 1.08996 * 109.46909 * 300.00599 * 8 6 5 38 38 H 0.97002 * 119.99662 * 0.02562 * 9 8 6 39 39 H 1.09001 * 109.47232 * 60.00020 * 12 10 9 40 40 H 1.09004 * 109.47296 * 299.99447 * 12 10 9 41 41 H 1.08005 * 120.00103 * 359.97438 * 14 13 12 42 42 H 1.07999 * 119.99751 * 179.97438 * 15 14 13 43 43 H 1.08002 * 119.99744 * 179.97438 * 16 15 14 44 44 H 1.07998 * 120.00395 * 179.72811 * 17 16 15 45 45 H 1.08000 * 120.00005 * 359.97438 * 18 13 12 46 46 H 1.09002 * 109.88318 * 120.70467 * 19 5 4 47 47 H 1.08997 * 109.88742 * 241.87247 * 19 5 4 48 48 H 0.97006 * 120.00344 * 93.54810 * 22 20 19 49 49 H 0.97000 * 119.99830 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0836 -0.8125 1.1999 5 7 3.4271 -1.2435 0.7727 6 6 4.4476 -1.5623 1.5932 7 8 4.3008 -1.5013 2.7955 8 6 5.7712 -1.9948 1.0167 9 7 6.7072 -2.2841 2.1060 10 6 7.9615 -2.6904 1.8266 11 8 8.3152 -2.8171 0.6734 12 6 8.9241 -2.9885 2.9470 13 6 10.2477 -3.4209 2.3705 14 6 11.2216 -2.4797 2.0939 15 6 12.4359 -2.8763 1.5656 16 6 12.6760 -4.2141 1.3134 17 6 11.6999 -5.1546 1.5844 18 6 10.4879 -4.7587 2.1186 19 6 3.4674 -1.2739 -0.6966 20 6 2.0861 -0.8074 -1.2026 21 1 2.1921 -0.1691 -2.0798 22 7 1.2268 -1.9568 -1.4971 23 6 1.2814 -2.5552 -2.7276 24 1 1.9584 -2.1800 -3.4809 25 6 0.4668 -3.6439 -3.0067 26 7 -0.3585 -4.1008 -2.0889 27 14 0.5419 -4.4605 -4.6851 28 1 1.9160 -4.9692 -4.9271 29 1 -0.4199 -5.5912 -4.7290 30 1 0.1890 -3.4701 -5.7338 31 1 -0.3634 -1.0253 0.0695 32 1 -0.3634 0.5728 0.8533 33 1 -0.3634 0.4525 -0.9227 34 1 1.4524 -1.6788 1.3979 35 1 2.1515 -0.1812 2.0860 36 1 6.1741 -1.1966 0.3933 37 1 5.6289 -2.8909 0.4127 38 1 6.4242 -2.1831 3.0283 39 1 8.5210 -3.7873 3.5695 40 1 9.0661 -2.0929 3.5519 41 1 11.0339 -1.4344 2.2906 42 1 13.1967 -2.1410 1.3491 43 1 13.6246 -4.5239 0.9002 44 1 11.8858 -6.1993 1.3832 45 1 9.7273 -5.4941 2.3353 46 1 4.2425 -0.5993 -1.0603 47 1 3.6649 -2.2890 -1.0412 48 1 0.6190 -2.2940 -0.8204 49 1 -0.9274 -4.8618 -2.2839 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484908326.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:07 Heat of formation + Delta-G solvation = -51.798302 kcal Electronic energy + Delta-G solvation = -29327.592104 eV Core-core repulsion = 25253.810660 eV Total energy + Delta-G solvation = -4073.781444 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.52891 -40.83743 -39.67023 -39.01792 -35.75883 -35.53358 -34.03106 -33.80342 -32.25340 -31.75026 -30.15964 -29.33197 -28.19291 -26.48535 -25.75747 -23.57970 -23.46173 -22.68751 -21.42419 -20.73464 -20.46415 -19.43219 -18.57674 -17.89719 -17.51737 -17.43088 -17.07729 -16.76805 -16.45510 -16.11972 -15.85347 -15.72191 -15.59163 -15.34086 -14.76967 -14.56000 -14.52263 -14.26999 -14.19464 -13.92474 -13.72637 -13.42649 -13.35687 -13.31796 -13.07128 -12.89285 -12.87241 -12.76063 -12.33198 -12.18218 -12.00477 -11.99079 -11.85394 -11.46219 -11.38009 -11.18333 -11.11404 -10.92578 -10.29689 -9.78262 -9.72198 -9.62755 -9.01009 -7.92450 -5.20216 0.42091 0.53890 1.38465 1.49994 1.51138 1.56642 1.57491 1.67593 2.31843 2.57562 2.94468 3.27097 3.39212 3.67270 3.70911 3.88220 3.91015 3.95905 3.99555 4.09451 4.17743 4.20298 4.29644 4.32443 4.39700 4.42836 4.58806 4.60452 4.64643 4.66627 4.71630 4.79377 4.88134 4.96503 5.00837 5.10272 5.15479 5.17970 5.21659 5.24427 5.33636 5.54946 5.57787 5.60583 5.64400 5.67802 6.14269 6.29309 6.40530 6.45445 6.90729 7.15082 7.37229 8.11861 8.33929 9.30418 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011628 B = 0.002202 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.418960 B =12709.852856 C =14438.196164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.098 4.098 3 H 0.113 0.887 4 C 0.116 3.884 5 N -0.602 5.602 6 C 0.523 3.477 7 O -0.574 6.574 8 C 0.111 3.889 9 N -0.713 5.713 10 C 0.516 3.484 11 O -0.574 6.574 12 C -0.094 4.094 13 C -0.082 4.082 14 C -0.120 4.120 15 C -0.130 4.130 16 C -0.131 4.131 17 C -0.133 4.133 18 C -0.124 4.124 19 C 0.075 3.925 20 C 0.161 3.839 21 H 0.083 0.917 22 N -0.722 5.722 23 C -0.235 4.235 24 H 0.082 0.918 25 C -0.073 4.073 26 N -0.968 5.968 27 Si 0.965 3.035 28 H -0.281 1.281 29 H -0.302 1.302 30 H -0.277 1.277 31 H 0.037 0.963 32 H 0.072 0.928 33 H 0.056 0.944 34 H 0.048 0.952 35 H 0.084 0.916 36 H 0.108 0.892 37 H 0.090 0.910 38 H 0.418 0.582 39 H 0.126 0.874 40 H 0.132 0.868 41 H 0.132 0.868 42 H 0.140 0.860 43 H 0.140 0.860 44 H 0.136 0.864 45 H 0.126 0.874 46 H 0.092 0.908 47 H 0.055 0.945 48 H 0.376 0.624 49 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.858 7.189 11.447 24.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.118 4.118 3 H 0.131 0.869 4 C -0.007 4.007 5 N -0.334 5.334 6 C 0.312 3.688 7 O -0.455 6.455 8 C -0.016 4.016 9 N -0.369 5.369 10 C 0.304 3.696 11 O -0.453 6.453 12 C -0.133 4.133 13 C -0.083 4.083 14 C -0.138 4.138 15 C -0.148 4.148 16 C -0.148 4.148 17 C -0.150 4.150 18 C -0.142 4.142 19 C -0.050 4.050 20 C 0.050 3.950 21 H 0.101 0.899 22 N -0.363 5.363 23 C -0.367 4.367 24 H 0.100 0.900 25 C -0.265 4.265 26 N -0.618 5.618 27 Si 0.795 3.205 28 H -0.208 1.208 29 H -0.229 1.229 30 H -0.203 1.203 31 H 0.056 0.944 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.102 0.898 36 H 0.126 0.874 37 H 0.108 0.892 38 H 0.257 0.743 39 H 0.144 0.856 40 H 0.150 0.850 41 H 0.150 0.850 42 H 0.158 0.842 43 H 0.158 0.842 44 H 0.154 0.846 45 H 0.144 0.856 46 H 0.110 0.890 47 H 0.074 0.926 48 H 0.209 0.791 49 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 21.101 7.075 11.103 24.871 hybrid contribution -0.830 -1.131 -0.494 1.488 sum 20.270 5.944 10.609 23.638 Atomic orbital electron populations 1.21480 0.93531 1.01344 1.02035 1.22629 0.96725 0.99363 0.93048 0.86909 1.22332 0.82066 0.97913 0.98365 1.48420 1.11972 1.64932 1.08056 1.20312 0.85533 0.76962 0.85996 1.90640 1.83685 1.55923 1.15289 1.20914 0.86782 1.03060 0.90834 1.45736 1.11521 1.68919 1.10702 1.21129 0.81970 0.75513 0.90968 1.90737 1.77710 1.53266 1.23580 1.20713 0.90609 1.06170 0.95846 1.19515 0.94779 0.93911 1.00069 1.21273 0.93788 0.99661 0.99114 1.21434 0.97544 0.96755 0.99073 1.21476 1.00081 0.93392 0.99894 1.21416 0.93766 1.00697 0.99160 1.21263 0.97808 0.95763 0.99414 1.23189 1.01734 1.01905 0.78179 1.21492 0.88224 0.88780 0.96467 0.89948 1.42601 1.46110 1.34017 1.13535 1.19591 1.16969 1.08553 0.91594 0.90050 1.25456 0.99726 1.00365 1.00950 1.69796 1.28777 1.28233 1.35036 0.85334 0.76857 0.77724 0.80552 1.20788 1.22900 1.20294 0.94410 0.90908 0.92452 0.93404 0.89803 0.87401 0.89223 0.74314 0.85590 0.85015 0.85016 0.84197 0.84200 0.84590 0.85634 0.88993 0.92617 0.79053 0.94276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.61 8.85 71.98 0.64 -2.98 16 2 C -0.10 -2.67 3.53 -9.32 -0.03 -2.70 16 3 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16 4 C 0.12 3.43 6.35 86.93 0.55 3.99 16 5 N -0.60 -18.09 3.32 -811.37 -2.70 -20.79 16 6 C 0.52 15.48 7.92 87.66 0.69 16.17 16 7 O -0.57 -19.13 15.92 -3.03 -0.05 -19.18 16 8 C 0.11 2.86 5.35 85.63 0.46 3.31 16 9 N -0.71 -15.97 5.53 -466.79 -2.58 -18.55 16 10 C 0.52 11.97 7.82 87.65 0.69 12.66 16 11 O -0.57 -18.32 16.03 -3.04 -0.05 -18.36 16 12 C -0.09 -1.44 5.83 29.10 0.17 -1.27 16 13 C -0.08 -1.59 4.37 -19.86 -0.09 -1.67 16 14 C -0.12 -2.20 9.70 22.27 0.22 -1.98 16 15 C -0.13 -2.19 10.05 22.27 0.22 -1.96 16 16 C -0.13 -2.16 10.05 22.27 0.22 -1.94 16 17 C -0.13 -2.37 10.05 22.27 0.22 -2.15 16 18 C -0.12 -2.44 9.70 22.27 0.22 -2.23 16 19 C 0.08 2.28 6.23 86.73 0.54 2.82 16 20 C 0.16 5.35 3.36 46.18 0.16 5.51 16 21 H 0.08 2.61 8.12 -2.39 -0.02 2.59 16 22 N -0.72 -32.52 4.61 -317.32 -1.46 -33.99 16 23 C -0.24 -12.00 9.98 84.03 0.84 -11.16 16 24 H 0.08 3.92 7.83 -2.91 -0.02 3.90 16 25 C -0.07 -3.97 5.50 84.86 0.47 -3.51 16 26 N -0.97 -57.24 13.06 21.65 0.28 -56.96 16 27 Si 0.97 44.77 29.55 68.60 2.03 46.80 16 28 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 29 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 30 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 31 H 0.04 1.33 6.37 -2.39 -0.02 1.32 16 32 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.05 1.66 7.99 -2.39 -0.02 1.64 16 35 H 0.08 2.29 8.04 -2.38 -0.02 2.27 16 36 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 37 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 38 H 0.42 8.32 7.44 -92.71 -0.69 7.63 16 39 H 0.13 1.39 8.08 -2.39 -0.02 1.38 16 40 H 0.13 1.28 8.09 -2.38 -0.02 1.27 16 41 H 0.13 1.94 8.06 -2.91 -0.02 1.91 16 42 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 43 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 44 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 45 H 0.13 2.17 8.06 -2.91 -0.02 2.15 16 46 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 47 H 0.06 2.00 8.04 -2.39 -0.02 1.98 16 48 H 0.38 18.65 6.10 -92.70 -0.57 18.09 16 49 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 Total: -1.00 -70.96 407.54 1.36 -69.60 By element: Atomic # 1 Polarization: 40.82 SS G_CDS: -0.29 Total: 40.53 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: 6.18 Total: 10.91 kcal Atomic # 7 Polarization: -123.84 SS G_CDS: -6.46 Total: -130.29 kcal Atomic # 8 Polarization: -37.45 SS G_CDS: -0.10 Total: -37.54 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -70.96 1.36 -69.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484908326.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.803 kcal (2) G-P(sol) polarization free energy of solvation -70.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds