Wall clock time and date at job start Wed Apr 1 2020 03:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 110.64092 * 2 1 4 4 C 1.54324 * 110.72001 * 123.14135 * 2 1 3 5 5 N 1.47020 * 107.39983 * 140.65611 * 4 2 1 6 6 C 1.34780 * 125.64983 * 181.10309 * 5 4 2 7 7 O 1.21289 * 119.99816 * 359.97438 * 6 5 4 8 8 C 1.50697 * 120.00483 * 179.97438 * 6 5 4 9 9 N 1.46500 * 109.47482 * 179.97438 * 8 6 5 10 10 C 1.34771 * 120.00222 * 179.97438 * 9 8 6 11 11 O 1.21285 * 119.99773 * 0.02562 * 10 9 8 12 12 C 1.50697 * 120.00020 * 180.02562 * 10 9 8 13 13 C 1.50702 * 109.47040 * 180.02562 * 12 10 9 14 14 C 1.38241 * 119.99583 * 269.72474 * 13 12 10 15 15 C 1.38243 * 119.99627 * 179.76636 * 14 13 12 16 16 C 1.38233 * 119.99868 * 0.50717 * 15 14 13 17 17 C 1.38233 * 120.00155 * 359.74701 * 16 15 14 18 18 C 1.38234 * 120.00273 * 0.02562 * 17 16 15 19 19 C 1.47743 * 108.53125 * 1.18235 * 5 4 2 20 20 C 1.54909 * 104.83995 * 335.74644 * 19 5 4 21 21 H 1.08989 * 111.04037 * 279.00643 * 20 19 5 22 22 N 1.46498 * 111.00162 * 155.16578 * 20 19 5 23 23 C 1.36942 * 120.00022 * 92.80865 * 22 20 19 24 24 H 1.08006 * 119.99757 * 0.02562 * 23 22 20 25 25 C 1.38810 * 120.00359 * 179.97438 * 23 22 20 26 26 N 1.31616 * 120.00164 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 119.99855 * 179.97438 * 25 23 22 28 28 H 1.48497 * 109.47321 * 60.00419 * 27 25 23 29 29 H 1.48503 * 109.47028 * 180.02562 * 27 25 23 30 30 H 1.48500 * 109.47365 * 300.00161 * 27 25 23 31 31 H 1.08998 * 109.46692 * 298.31216 * 1 2 3 32 32 H 1.08997 * 109.47070 * 58.30879 * 1 2 3 33 33 H 1.09002 * 109.47183 * 178.31263 * 1 2 3 34 34 H 1.09002 * 109.88322 * 260.15141 * 4 2 1 35 35 H 1.09000 * 109.88025 * 21.16306 * 4 2 1 36 36 H 1.09004 * 109.46826 * 300.00015 * 8 6 5 37 37 H 1.08999 * 109.47133 * 59.99882 * 8 6 5 38 38 H 0.97006 * 119.99672 * 0.02562 * 9 8 6 39 39 H 1.08994 * 109.47287 * 299.99931 * 12 10 9 40 40 H 1.09000 * 109.47567 * 60.00263 * 12 10 9 41 41 H 1.07991 * 120.00397 * 359.97438 * 14 13 12 42 42 H 1.07998 * 119.99658 * 180.23146 * 15 14 13 43 43 H 1.08002 * 120.00140 * 179.72140 * 16 15 14 44 44 H 1.08005 * 120.00255 * 179.97438 * 17 16 15 45 45 H 1.08001 * 120.00450 * 179.97438 * 18 17 16 46 46 H 1.09003 * 110.29227 * 216.94505 * 19 5 4 47 47 H 1.08996 * 110.53057 * 94.67717 * 19 5 4 48 48 H 0.96998 * 120.00750 * 272.81024 * 22 20 19 49 49 H 0.96996 * 120.00537 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0761 -0.7891 1.2086 5 7 3.2464 -1.5488 0.7453 6 6 3.9920 -2.3804 1.4996 7 8 3.7156 -2.5511 2.6682 8 6 5.1692 -3.0982 0.8912 9 7 5.8104 -3.9345 1.9088 10 6 6.8914 -4.6736 1.5903 11 8 7.3337 -4.6460 0.4613 12 6 7.5507 -5.5344 2.6370 13 6 8.7279 -6.2520 2.0285 14 6 8.5561 -7.4969 1.4525 15 6 9.6350 -8.1531 0.8901 16 6 10.8877 -7.5691 0.9130 17 6 11.0605 -6.3266 1.4937 18 6 9.9808 -5.6683 2.0520 19 6 3.4674 -1.2455 -0.6837 20 6 2.0828 -0.7949 -1.2124 21 1 1.4512 -1.6542 -1.4370 22 7 2.2251 0.0698 -2.3864 23 6 2.1937 -0.4719 -3.6437 24 1 2.0636 -1.5367 -3.7698 25 6 2.3280 0.3474 -4.7561 26 7 2.4860 1.6450 -4.6025 27 14 2.2858 -0.3918 -6.4711 28 1 0.9846 -1.0750 -6.6838 29 1 2.4499 0.6864 -7.4790 30 1 3.3900 -1.3744 -6.6139 31 1 -0.3633 0.4874 0.9047 32 1 -0.3633 0.5399 -0.8744 33 1 -0.3634 -1.0272 -0.0303 34 1 2.3712 -0.0991 1.9991 35 1 1.3131 -1.4734 1.5798 36 1 4.8265 -3.7253 0.0681 37 1 5.8864 -2.3676 0.5172 38 1 5.4564 -3.9569 2.8117 39 1 7.8936 -4.9073 3.4598 40 1 6.8334 -6.2648 3.0113 41 1 7.5784 -7.9553 1.4388 42 1 9.5000 -9.1240 0.4367 43 1 11.7316 -8.0837 0.4776 44 1 12.0393 -5.8704 1.5121 45 1 10.1158 -4.6977 2.5060 46 1 3.8032 -2.1378 -1.2120 47 1 4.1960 -0.4426 -0.7958 48 1 2.3416 1.0261 -2.2732 49 1 2.5802 2.2176 -5.3797 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484908328.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:16 Heat of formation + Delta-G solvation = -35.323782 kcal Electronic energy + Delta-G solvation = -29081.501675 eV Core-core repulsion = 25008.434619 eV Total energy + Delta-G solvation = -4073.067056 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.46815 -39.82871 -38.81936 -37.70635 -34.54784 -34.16979 -33.16066 -32.62350 -31.09505 -30.80362 -29.21254 -27.66586 -27.30468 -25.44400 -23.99569 -22.80002 -22.07106 -21.58889 -20.53462 -20.02504 -19.37739 -17.66689 -17.30914 -17.06795 -16.51472 -16.34751 -16.10407 -15.78284 -15.31070 -15.08155 -14.82620 -14.53793 -14.14864 -13.78118 -13.62635 -13.50156 -13.28929 -13.20363 -13.18714 -13.02931 -12.70612 -12.64707 -12.54221 -12.13019 -11.93573 -11.71173 -11.37106 -11.22324 -11.16193 -11.06023 -10.78179 -10.68206 -10.31756 -10.13409 -10.05166 -10.00295 -9.77972 -9.30811 -9.10261 -9.07177 -8.94189 -8.52355 -7.15344 -5.89957 -3.21350 1.10739 1.21907 2.45708 2.56432 2.68197 3.27831 3.38140 3.43567 3.43654 3.65425 4.35628 4.37466 4.52127 4.57100 4.75866 4.79265 4.89384 4.94126 4.97423 5.04335 5.13197 5.15589 5.26259 5.29334 5.34612 5.42173 5.47876 5.56637 5.66590 5.75560 5.76964 5.82486 5.83444 5.94077 6.09466 6.13049 6.17126 6.23690 6.27864 6.30695 6.35725 6.38458 6.39125 6.54651 6.77754 6.78853 7.31957 7.56098 7.59314 8.02587 8.09468 8.27216 9.39455 9.91613 10.26435 11.31647 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010337 B = 0.002198 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2708.070708 B =12738.218823 C =14912.433098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.115 4.115 3 H 0.085 0.915 4 C 0.117 3.883 5 N -0.606 5.606 6 C 0.522 3.478 7 O -0.555 6.555 8 C 0.105 3.895 9 N -0.720 5.720 10 C 0.514 3.486 11 O -0.529 6.529 12 C -0.101 4.101 13 C -0.066 4.066 14 C -0.105 4.105 15 C -0.120 4.120 16 C -0.121 4.121 17 C -0.120 4.120 18 C -0.105 4.105 19 C 0.066 3.934 20 C 0.178 3.822 21 H 0.070 0.930 22 N -0.708 5.708 23 C -0.251 4.251 24 H 0.072 0.928 25 C -0.006 4.006 26 N -0.929 5.929 27 Si 0.908 3.092 28 H -0.285 1.285 29 H -0.290 1.290 30 H -0.284 1.284 31 H 0.049 0.951 32 H 0.068 0.932 33 H 0.052 0.948 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.411 0.589 39 H 0.105 0.895 40 H 0.105 0.895 41 H 0.120 0.880 42 H 0.121 0.879 43 H 0.120 0.880 44 H 0.121 0.879 45 H 0.120 0.880 46 H 0.073 0.927 47 H 0.074 0.926 48 H 0.387 0.613 49 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.549 -13.969 17.044 24.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.135 4.135 3 H 0.103 0.897 4 C -0.006 4.006 5 N -0.339 5.339 6 C 0.310 3.690 7 O -0.435 6.435 8 C -0.022 4.022 9 N -0.375 5.375 10 C 0.300 3.700 11 O -0.404 6.404 12 C -0.141 4.141 13 C -0.067 4.067 14 C -0.123 4.123 15 C -0.138 4.138 16 C -0.139 4.139 17 C -0.138 4.138 18 C -0.123 4.123 19 C -0.060 4.060 20 C 0.065 3.935 21 H 0.088 0.912 22 N -0.348 5.348 23 C -0.382 4.382 24 H 0.090 0.910 25 C -0.203 4.203 26 N -0.576 5.576 27 Si 0.739 3.261 28 H -0.211 1.211 29 H -0.216 1.216 30 H -0.210 1.210 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.248 0.752 39 H 0.123 0.877 40 H 0.123 0.877 41 H 0.138 0.862 42 H 0.139 0.861 43 H 0.138 0.862 44 H 0.139 0.861 45 H 0.138 0.862 46 H 0.091 0.909 47 H 0.093 0.907 48 H 0.222 0.778 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 9.732 -14.137 16.669 23.926 hybrid contribution -0.065 0.083 -0.672 0.680 sum 9.667 -14.054 15.998 23.386 Atomic orbital electron populations 1.21649 0.93819 1.01788 1.01836 1.22540 0.96587 0.99867 0.94525 0.89709 1.22010 0.87133 0.94378 0.97071 1.48517 1.29429 1.43228 1.12757 1.20078 0.83611 0.79337 0.85979 1.90655 1.71348 1.65049 1.16427 1.21023 0.93952 0.95420 0.91849 1.45737 1.30775 1.46087 1.14949 1.20527 0.79837 0.80022 0.89601 1.90770 1.63171 1.64743 1.21725 1.20652 0.96634 0.99141 0.97625 1.19266 0.93614 0.94619 0.99161 1.20996 0.98856 0.94734 0.97735 1.21110 0.92925 1.00092 0.99644 1.21150 0.97352 0.95818 0.99625 1.21108 0.98783 0.95351 0.98534 1.20992 0.92337 0.99345 0.99638 1.23747 1.03096 1.01213 0.77957 1.21353 0.91561 0.93829 0.86721 0.91204 1.42288 1.86154 1.06209 1.00108 1.19192 1.43298 0.92655 0.83076 0.90988 1.24765 1.02054 0.95426 0.98048 1.69640 1.55649 1.02718 1.29551 0.86263 0.77962 0.77854 0.84063 1.21127 1.21627 1.21045 0.93208 0.91315 0.92856 0.91846 0.91465 0.88245 0.88281 0.75167 0.87723 0.87710 0.86201 0.86077 0.86197 0.86079 0.86207 0.90869 0.90729 0.77810 0.93224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.80 9.14 37.16 0.34 -1.46 16 2 C -0.12 -1.70 3.19 -88.78 -0.28 -1.98 16 3 H 0.08 1.29 8.00 -51.93 -0.42 0.88 16 4 C 0.12 1.62 6.45 -3.06 -0.02 1.60 16 5 N -0.61 -8.87 3.34 -170.26 -0.57 -9.44 16 6 C 0.52 7.51 7.92 -10.99 -0.09 7.42 16 7 O -0.56 -8.96 15.99 5.55 0.09 -8.87 16 8 C 0.10 1.33 5.17 -5.20 -0.03 1.31 16 9 N -0.72 -8.10 5.53 -61.47 -0.34 -8.44 16 10 C 0.51 6.07 7.82 -10.99 -0.09 5.98 16 11 O -0.53 -8.46 16.03 5.55 0.09 -8.37 16 12 C -0.10 -0.82 5.83 -29.04 -0.17 -0.99 16 13 C -0.07 -0.66 4.37 -104.62 -0.46 -1.12 16 14 C -0.11 -1.02 9.70 -39.58 -0.38 -1.41 16 15 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 16 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 17 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 18 C -0.11 -1.02 9.70 -39.58 -0.38 -1.41 16 19 C 0.07 1.04 6.41 -2.35 -0.02 1.03 16 20 C 0.18 3.15 3.17 -65.78 -0.21 2.94 16 21 H 0.07 1.27 7.99 -51.94 -0.42 0.86 16 22 N -0.71 -16.00 5.24 -51.35 -0.27 -16.27 16 23 C -0.25 -6.46 9.96 -15.06 -0.15 -6.61 16 24 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 25 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 26 N -0.93 -26.57 13.06 55.49 0.72 -25.85 16 27 Si 0.91 21.47 29.55 -169.99 -5.02 16.45 16 28 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 29 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 30 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.05 0.69 8.13 -51.93 -0.42 0.26 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 0.91 7.82 -51.93 -0.41 0.50 16 36 H 0.10 1.28 7.86 -51.93 -0.41 0.87 16 37 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.41 4.12 7.44 -40.82 -0.30 3.81 16 39 H 0.10 0.63 8.08 -51.93 -0.42 0.21 16 40 H 0.10 0.63 8.08 -51.93 -0.42 0.21 16 41 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 42 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 43 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 44 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 45 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 46 H 0.07 1.14 7.50 -51.93 -0.39 0.75 16 47 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 48 H 0.39 9.38 7.76 -40.82 -0.32 9.06 16 49 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 410.37 15.07 6.18 6.18 Total: -1.00 -32.12 410.37 -10.03 -42.15 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: -7.69 Total: 11.85 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: -3.22 Total: 0.61 kcal Atomic # 7 Polarization: -59.55 SS G_CDS: -0.45 Total: -60.00 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: 0.18 Total: -17.25 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -32.12 -10.03 -42.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484908328.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.823 kcal (2) G-P(sol) polarization free energy of solvation -32.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds