Wall clock time and date at job start Wed Apr 1 2020 03:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 110.64092 * 2 1 4 4 C 1.54324 * 110.72001 * 123.14135 * 2 1 3 5 5 N 1.47020 * 107.39983 * 140.65611 * 4 2 1 6 6 C 1.34780 * 125.64983 * 181.10309 * 5 4 2 7 7 O 1.21289 * 119.99816 * 359.97438 * 6 5 4 8 8 C 1.50697 * 120.00483 * 179.97438 * 6 5 4 9 9 N 1.46500 * 109.47482 * 179.97438 * 8 6 5 10 10 C 1.34771 * 120.00222 * 179.97438 * 9 8 6 11 11 O 1.21285 * 119.99773 * 0.02562 * 10 9 8 12 12 C 1.50697 * 120.00020 * 180.02562 * 10 9 8 13 13 C 1.50702 * 109.47040 * 180.02562 * 12 10 9 14 14 C 1.38241 * 119.99583 * 269.72474 * 13 12 10 15 15 C 1.38243 * 119.99627 * 179.76636 * 14 13 12 16 16 C 1.38233 * 119.99868 * 0.50717 * 15 14 13 17 17 C 1.38233 * 120.00155 * 359.74701 * 16 15 14 18 18 C 1.38234 * 120.00273 * 0.02562 * 17 16 15 19 19 C 1.47743 * 108.53125 * 1.18235 * 5 4 2 20 20 C 1.54909 * 104.83995 * 335.74644 * 19 5 4 21 21 H 1.08989 * 111.04037 * 279.00643 * 20 19 5 22 22 N 1.46498 * 111.00162 * 155.16578 * 20 19 5 23 23 C 1.36942 * 120.00022 * 92.80865 * 22 20 19 24 24 H 1.08006 * 119.99757 * 0.02562 * 23 22 20 25 25 C 1.38810 * 120.00359 * 179.97438 * 23 22 20 26 26 N 1.31616 * 120.00164 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 119.99855 * 179.97438 * 25 23 22 28 28 H 1.48497 * 109.47321 * 60.00419 * 27 25 23 29 29 H 1.48503 * 109.47028 * 180.02562 * 27 25 23 30 30 H 1.48500 * 109.47365 * 300.00161 * 27 25 23 31 31 H 1.08998 * 109.46692 * 298.31216 * 1 2 3 32 32 H 1.08997 * 109.47070 * 58.30879 * 1 2 3 33 33 H 1.09002 * 109.47183 * 178.31263 * 1 2 3 34 34 H 1.09002 * 109.88322 * 260.15141 * 4 2 1 35 35 H 1.09000 * 109.88025 * 21.16306 * 4 2 1 36 36 H 1.09004 * 109.46826 * 300.00015 * 8 6 5 37 37 H 1.08999 * 109.47133 * 59.99882 * 8 6 5 38 38 H 0.97006 * 119.99672 * 0.02562 * 9 8 6 39 39 H 1.08994 * 109.47287 * 299.99931 * 12 10 9 40 40 H 1.09000 * 109.47567 * 60.00263 * 12 10 9 41 41 H 1.07991 * 120.00397 * 359.97438 * 14 13 12 42 42 H 1.07998 * 119.99658 * 180.23146 * 15 14 13 43 43 H 1.08002 * 120.00140 * 179.72140 * 16 15 14 44 44 H 1.08005 * 120.00255 * 179.97438 * 17 16 15 45 45 H 1.08001 * 120.00450 * 179.97438 * 18 17 16 46 46 H 1.09003 * 110.29227 * 216.94505 * 19 5 4 47 47 H 1.08996 * 110.53057 * 94.67717 * 19 5 4 48 48 H 0.96998 * 120.00750 * 272.81024 * 22 20 19 49 49 H 0.96996 * 120.00537 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0761 -0.7891 1.2086 5 7 3.2464 -1.5488 0.7453 6 6 3.9920 -2.3804 1.4996 7 8 3.7156 -2.5511 2.6682 8 6 5.1692 -3.0982 0.8912 9 7 5.8104 -3.9345 1.9088 10 6 6.8914 -4.6736 1.5903 11 8 7.3337 -4.6460 0.4613 12 6 7.5507 -5.5344 2.6370 13 6 8.7279 -6.2520 2.0285 14 6 8.5561 -7.4969 1.4525 15 6 9.6350 -8.1531 0.8901 16 6 10.8877 -7.5691 0.9130 17 6 11.0605 -6.3266 1.4937 18 6 9.9808 -5.6683 2.0520 19 6 3.4674 -1.2455 -0.6837 20 6 2.0828 -0.7949 -1.2124 21 1 1.4512 -1.6542 -1.4370 22 7 2.2251 0.0698 -2.3864 23 6 2.1937 -0.4719 -3.6437 24 1 2.0636 -1.5367 -3.7698 25 6 2.3280 0.3474 -4.7561 26 7 2.4860 1.6450 -4.6025 27 14 2.2858 -0.3918 -6.4711 28 1 0.9846 -1.0750 -6.6838 29 1 2.4499 0.6864 -7.4790 30 1 3.3900 -1.3744 -6.6139 31 1 -0.3633 0.4874 0.9047 32 1 -0.3633 0.5399 -0.8744 33 1 -0.3634 -1.0272 -0.0303 34 1 2.3712 -0.0991 1.9991 35 1 1.3131 -1.4734 1.5798 36 1 4.8265 -3.7253 0.0681 37 1 5.8864 -2.3676 0.5172 38 1 5.4564 -3.9569 2.8117 39 1 7.8936 -4.9073 3.4598 40 1 6.8334 -6.2648 3.0113 41 1 7.5784 -7.9553 1.4388 42 1 9.5000 -9.1240 0.4367 43 1 11.7316 -8.0837 0.4776 44 1 12.0393 -5.8704 1.5121 45 1 10.1158 -4.6977 2.5060 46 1 3.8032 -2.1378 -1.2120 47 1 4.1960 -0.4426 -0.7958 48 1 2.3416 1.0261 -2.2732 49 1 2.5802 2.2176 -5.3797 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484908328.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:15 Heat of formation + Delta-G solvation = -55.390656 kcal Electronic energy + Delta-G solvation = -29082.371839 eV Core-core repulsion = 25008.434619 eV Total energy + Delta-G solvation = -4073.937221 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.52817 -40.82359 -39.65249 -38.96466 -35.91663 -35.54380 -34.05287 -33.80559 -32.52461 -31.74970 -30.15875 -29.18108 -28.19549 -26.50918 -25.80343 -23.46239 -23.16064 -22.67430 -21.42501 -21.36954 -20.52402 -19.15094 -18.66435 -17.92421 -17.58484 -17.50845 -17.07393 -16.78372 -16.39028 -16.20300 -15.83213 -15.70620 -15.38451 -15.30640 -14.72216 -14.51145 -14.46089 -14.38567 -14.23717 -14.04796 -13.92069 -13.63211 -13.36173 -13.21165 -13.05792 -12.89667 -12.87682 -12.81680 -12.25485 -12.16462 -12.00614 -12.00120 -11.85335 -11.71619 -11.42780 -11.19802 -11.11402 -10.91969 -10.30198 -9.78227 -9.77548 -9.62649 -9.04422 -7.94544 -5.23873 0.42142 0.53917 1.36462 1.50383 1.51761 1.57200 1.57872 1.62431 2.27898 2.57072 2.94461 3.20934 3.37062 3.67338 3.70401 3.79280 3.92863 3.96089 4.00060 4.16905 4.17731 4.19911 4.29602 4.32734 4.36477 4.40266 4.45960 4.57990 4.59408 4.66563 4.68491 4.79499 4.87169 4.89516 5.02925 5.11657 5.12971 5.16156 5.18006 5.22364 5.34702 5.46556 5.55394 5.57754 5.64497 5.67636 6.14334 6.26258 6.34479 6.45040 6.87948 7.16087 7.34678 8.05914 8.29614 9.27826 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010337 B = 0.002198 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2708.070708 B =12738.218823 C =14912.433098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.105 4.105 3 H 0.079 0.921 4 C 0.120 3.880 5 N -0.606 5.606 6 C 0.527 3.473 7 O -0.568 6.568 8 C 0.108 3.892 9 N -0.712 5.712 10 C 0.515 3.485 11 O -0.575 6.575 12 C -0.093 4.093 13 C -0.083 4.083 14 C -0.122 4.122 15 C -0.132 4.132 16 C -0.131 4.131 17 C -0.132 4.132 18 C -0.122 4.122 19 C 0.079 3.921 20 C 0.171 3.829 21 H 0.068 0.932 22 N -0.719 5.719 23 C -0.242 4.242 24 H 0.078 0.922 25 C -0.068 4.068 26 N -0.965 5.965 27 Si 0.966 3.034 28 H -0.278 1.278 29 H -0.299 1.299 30 H -0.280 1.280 31 H 0.074 0.926 32 H 0.046 0.954 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.419 0.581 39 H 0.130 0.870 40 H 0.130 0.870 41 H 0.130 0.870 42 H 0.138 0.862 43 H 0.139 0.861 44 H 0.138 0.862 45 H 0.129 0.871 46 H 0.076 0.924 47 H 0.065 0.935 48 H 0.377 0.623 49 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.564 -15.458 18.578 25.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.125 4.125 3 H 0.097 0.903 4 C -0.002 4.002 5 N -0.339 5.339 6 C 0.316 3.684 7 O -0.449 6.449 8 C -0.019 4.019 9 N -0.368 5.368 10 C 0.303 3.697 11 O -0.454 6.454 12 C -0.132 4.132 13 C -0.083 4.083 14 C -0.140 4.140 15 C -0.150 4.150 16 C -0.149 4.149 17 C -0.150 4.150 18 C -0.140 4.140 19 C -0.046 4.046 20 C 0.060 3.940 21 H 0.086 0.914 22 N -0.357 5.357 23 C -0.374 4.374 24 H 0.096 0.904 25 C -0.260 4.260 26 N -0.615 5.615 27 Si 0.795 3.205 28 H -0.204 1.204 29 H -0.225 1.225 30 H -0.206 1.206 31 H 0.093 0.907 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.117 0.883 37 H 0.115 0.885 38 H 0.258 0.742 39 H 0.148 0.852 40 H 0.148 0.852 41 H 0.148 0.852 42 H 0.156 0.844 43 H 0.157 0.843 44 H 0.156 0.844 45 H 0.147 0.853 46 H 0.094 0.906 47 H 0.083 0.917 48 H 0.210 0.790 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 9.728 -15.673 18.272 25.964 hybrid contribution -0.068 0.491 -1.050 1.161 sum 9.660 -15.182 17.222 24.908 Atomic orbital electron populations 1.21610 0.92649 1.02245 1.02097 1.22437 0.97509 0.99228 0.93314 0.90252 1.22034 0.87047 0.94545 0.96602 1.48483 1.29845 1.43496 1.12073 1.20223 0.83602 0.78902 0.85648 1.90652 1.71793 1.65468 1.16959 1.20930 0.93339 0.95450 0.92200 1.45711 1.30560 1.45552 1.14959 1.21155 0.79273 0.79589 0.89638 1.90752 1.64443 1.66316 1.23878 1.20710 0.96402 0.99309 0.96817 1.19527 0.94262 0.94959 0.99559 1.21276 0.99624 0.95109 0.98016 1.21429 0.93028 1.00925 0.99594 1.21475 0.98032 0.95949 0.99465 1.21425 0.99552 0.95650 0.98355 1.21271 0.92714 0.99970 1.00092 1.23360 1.01431 1.00987 0.78859 1.21524 0.92597 0.93569 0.86336 0.91438 1.42374 1.86406 1.06229 1.00709 1.19554 1.40617 0.92870 0.84309 0.90386 1.25464 1.03413 0.95852 1.01315 1.69781 1.58108 1.03820 1.29760 0.85332 0.78109 0.76827 0.80201 1.20426 1.22531 1.20616 0.90702 0.93448 0.92135 0.90885 0.90420 0.88335 0.88531 0.74193 0.85215 0.85168 0.85222 0.84425 0.84284 0.84443 0.85272 0.90558 0.91666 0.79013 0.94025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.25 9.14 71.98 0.66 -2.59 16 2 C -0.11 -2.96 3.19 -9.60 -0.03 -2.99 16 3 H 0.08 2.35 8.00 -2.39 -0.02 2.33 16 4 C 0.12 3.07 6.45 86.73 0.56 3.63 16 5 N -0.61 -16.72 3.34 -810.97 -2.71 -19.43 16 6 C 0.53 14.25 7.92 87.66 0.69 14.95 16 7 O -0.57 -17.09 15.99 -3.06 -0.05 -17.13 16 8 C 0.11 2.64 5.17 85.63 0.44 3.08 16 9 N -0.71 -14.89 5.53 -466.80 -2.58 -17.47 16 10 C 0.52 11.50 7.82 87.66 0.69 12.19 16 11 O -0.58 -18.22 16.03 -3.04 -0.05 -18.27 16 12 C -0.09 -1.33 5.83 29.10 0.17 -1.16 16 13 C -0.08 -1.55 4.37 -19.86 -0.09 -1.64 16 14 C -0.12 -2.27 9.70 22.27 0.22 -2.05 16 15 C -0.13 -2.28 10.05 22.27 0.22 -2.05 16 16 C -0.13 -2.18 10.05 22.27 0.22 -1.96 16 17 C -0.13 -2.28 10.05 22.27 0.22 -2.06 16 18 C -0.12 -2.28 9.70 22.27 0.22 -2.06 16 19 C 0.08 2.46 6.41 86.79 0.56 3.02 16 20 C 0.17 5.91 3.17 46.38 0.15 6.05 16 21 H 0.07 2.39 7.99 -2.39 -0.02 2.37 16 22 N -0.72 -32.60 5.24 -316.38 -1.66 -34.26 16 23 C -0.24 -12.41 9.96 84.03 0.84 -11.57 16 24 H 0.08 3.84 7.83 -2.91 -0.02 3.81 16 25 C -0.07 -3.68 5.50 84.86 0.47 -3.21 16 26 N -0.96 -56.29 13.06 21.65 0.28 -56.00 16 27 Si 0.97 44.43 29.55 68.60 2.03 46.46 16 28 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 29 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 30 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 31 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.05 1.40 8.14 -2.39 -0.02 1.39 16 33 H 0.06 1.44 8.13 -2.39 -0.02 1.42 16 34 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.08 1.87 7.82 -2.39 -0.02 1.85 16 36 H 0.10 2.45 7.86 -2.38 -0.02 2.43 16 37 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 38 H 0.42 7.49 7.44 -92.70 -0.69 6.80 16 39 H 0.13 1.20 8.08 -2.39 -0.02 1.18 16 40 H 0.13 1.19 8.08 -2.39 -0.02 1.17 16 41 H 0.13 1.99 8.06 -2.92 -0.02 1.97 16 42 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 43 H 0.14 1.64 8.06 -2.91 -0.02 1.62 16 44 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 45 H 0.13 2.00 8.06 -2.91 -0.02 1.98 16 46 H 0.08 2.32 7.50 -2.39 -0.02 2.30 16 47 H 0.07 2.17 8.14 -2.39 -0.02 2.16 16 48 H 0.38 18.58 7.76 -92.71 -0.72 17.86 16 49 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -68.96 410.37 1.02 -67.93 By element: Atomic # 1 Polarization: 39.05 SS G_CDS: -0.45 Total: 38.60 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: 6.20 Total: 9.56 kcal Atomic # 7 Polarization: -120.49 SS G_CDS: -6.66 Total: -127.16 kcal Atomic # 8 Polarization: -35.31 SS G_CDS: -0.10 Total: -35.41 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -68.96 1.02 -67.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484908328.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.544 kcal (2) G-P(sol) polarization free energy of solvation -68.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds