Wall clock time and date at job start Wed Apr 1 2020 04:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08995 * 109.47134 * 2 1 4 4 C 1.52995 * 109.47243 * 120.00882 * 2 1 3 5 5 C 1.52998 * 109.47171 * 184.99943 * 4 2 1 6 6 N 1.46497 * 109.47039 * 179.97438 * 5 4 2 7 7 C 1.34783 * 119.99823 * 179.97438 * 6 5 4 8 8 O 1.21281 * 119.99946 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.00030 * 180.02562 * 7 6 5 10 10 H 1.09000 * 112.82549 * 309.66964 * 9 7 6 11 11 C 1.53516 * 113.58798 * 178.56097 * 9 7 6 12 12 C 1.51618 * 87.24260 * 245.40999 * 11 9 7 13 13 C 1.38371 * 147.52284 * 180.02562 * 12 11 9 14 14 C 1.38095 * 120.32512 * 179.97438 * 13 12 11 15 15 C 1.38256 * 119.95369 * 0.02562 * 14 13 12 16 16 C 1.38094 * 119.95310 * 0.02562 * 15 14 13 17 17 C 1.38253 * 120.40973 * 359.92301 * 16 15 14 18 18 N 1.46901 * 109.46830 * 240.00491 * 2 1 3 19 19 C 1.46902 * 110.99844 * 84.99930 * 18 2 1 20 20 C 1.50702 * 109.47027 * 179.97438 * 19 18 2 21 21 O 1.21293 * 120.00255 * 0.02562 * 20 19 18 22 22 N 1.34777 * 119.99928 * 179.72353 * 20 19 18 23 23 C 1.37101 * 120.00327 * 180.27606 * 22 20 19 24 24 H 1.08001 * 119.99426 * 0.02562 * 23 22 20 25 25 C 1.38942 * 120.00412 * 180.02562 * 23 22 20 26 26 N 1.31414 * 120.00005 * 0.02562 * 25 23 22 27 27 Si 1.86803 * 120.00057 * 179.97438 * 25 23 22 28 28 H 1.48498 * 109.46867 * 90.00263 * 27 25 23 29 29 H 1.48501 * 109.47216 * 210.00120 * 27 25 23 30 30 H 1.48499 * 109.47135 * 330.00462 * 27 25 23 31 31 H 1.09000 * 109.47422 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47089 * 299.99716 * 1 2 3 33 33 H 1.09004 * 109.47615 * 59.99461 * 1 2 3 34 34 H 1.09001 * 109.47062 * 304.99629 * 4 2 1 35 35 H 1.08999 * 109.47071 * 64.99373 * 4 2 1 36 36 H 1.09001 * 109.46871 * 299.99803 * 5 4 2 37 37 H 1.08999 * 109.47588 * 59.99746 * 5 4 2 38 38 H 0.97000 * 120.00638 * 0.02562 * 6 5 4 39 39 H 1.09003 * 113.58902 * 359.97438 * 11 9 7 40 40 H 1.08990 * 113.58987 * 130.82092 * 11 9 7 41 41 H 1.07999 * 119.84015 * 359.95668 * 13 12 11 42 42 H 1.07995 * 120.02294 * 180.02562 * 14 13 12 43 43 H 1.08000 * 120.02293 * 179.97438 * 15 14 13 44 44 H 1.07997 * 119.83447 * 180.02562 * 16 15 14 45 45 H 1.00902 * 111.00235 * 321.05167 * 18 2 1 46 46 H 1.09004 * 109.47131 * 60.00016 * 19 18 2 47 47 H 1.09000 * 109.47732 * 300.00127 * 19 18 2 48 48 H 0.97000 * 120.00317 * 0.28382 * 22 20 19 49 49 H 0.96996 * 120.00330 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5648 -0.6135 1.3135 6 7 4.0531 -1.3037 2.5099 7 6 5.3740 -1.3399 2.7751 8 8 6.1584 -0.8006 2.0235 9 6 5.8764 -2.0504 4.0055 10 1 5.3518 -1.7486 4.9119 11 6 7.4051 -2.0308 4.1451 12 6 7.3679 -3.5355 3.9629 13 6 8.0790 -4.7200 3.8863 14 6 7.4203 -5.9170 3.6852 15 6 6.0437 -5.9346 3.5589 16 6 5.3293 -4.7551 3.6335 17 6 5.9819 -3.5533 3.8357 18 7 2.0196 -0.6924 -1.1995 19 6 2.0823 0.2228 -2.3469 20 6 2.5883 -0.5212 -3.5558 21 8 2.8686 -1.6982 -3.4702 22 7 2.7236 0.1198 -4.7337 23 6 3.1785 -0.5584 -5.8350 24 1 3.4281 -1.6064 -5.7586 25 6 3.3185 0.1025 -7.0491 26 7 3.0153 1.3778 -7.1418 27 14 3.9390 -0.8215 -8.5493 28 1 2.7871 -1.4047 -9.2829 29 1 4.6702 0.1151 -9.4401 30 1 4.8531 -1.9093 -8.1177 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 1.6054 -0.2620 2.1369 35 1 1.7515 -1.7716 1.2053 36 1 3.9994 -1.0729 0.4257 37 1 3.8532 0.4368 1.3573 38 1 3.4258 -1.7354 3.1108 39 1 7.9105 -1.5060 3.3342 40 1 7.7490 -1.7192 5.1312 41 1 9.1545 -4.7084 3.9841 42 1 7.9802 -6.8386 3.6266 43 1 5.5274 -6.8700 3.4011 44 1 4.2539 -4.7712 3.5349 45 1 1.4494 -1.4978 -1.4103 46 1 2.7587 1.0464 -2.1182 47 1 1.0869 0.6166 -2.5525 48 1 2.4992 1.0610 -4.8023 49 1 3.1133 1.8393 -7.9893 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484997714.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:08 Heat of formation + Delta-G solvation = -18.466844 kcal Electronic energy + Delta-G solvation = -28801.571422 eV Core-core repulsion = 24729.235338 eV Total energy + Delta-G solvation = -4072.336084 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.13889 -39.14496 -38.42940 -37.10132 -35.48847 -34.78541 -33.86275 -31.62482 -31.14386 -30.98675 -29.13590 -27.77335 -26.31768 -25.59479 -24.01891 -23.12482 -22.11282 -21.23570 -20.79270 -19.81568 -19.19452 -17.87256 -17.58318 -16.98483 -16.14625 -16.01511 -15.75911 -15.44403 -15.16228 -15.02414 -14.54823 -14.51464 -14.45720 -13.94515 -13.68485 -13.49983 -13.27608 -13.18380 -12.99848 -12.79587 -12.69786 -12.33226 -12.17419 -12.15543 -11.91280 -11.54996 -11.51589 -11.31834 -11.28473 -11.18380 -11.00922 -10.87225 -10.77693 -10.36579 -10.18621 -10.07580 -9.47683 -9.10194 -9.08943 -8.80620 -8.43319 -8.01544 -7.92216 -6.38514 -3.79141 0.99760 1.13448 2.47287 3.03342 3.20324 3.28765 3.35390 3.50612 3.85811 3.94706 4.09510 4.11545 4.13222 4.34774 4.63027 4.71366 4.78967 4.81502 4.88967 4.99878 5.12605 5.20375 5.28762 5.29511 5.31875 5.34036 5.40926 5.43976 5.55172 5.58454 5.68611 5.71883 5.77894 5.83534 5.84583 6.00282 6.09438 6.10770 6.11654 6.23423 6.26922 6.31907 6.40020 6.42400 6.70183 7.24349 7.38493 7.58450 7.68478 8.09821 8.12440 8.64793 9.21355 9.57928 10.09523 10.79328 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010263 B = 0.002067 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2727.588229 B =13545.486615 C =15053.376432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.085 3.915 3 H 0.080 0.920 4 C -0.115 4.115 5 C 0.121 3.879 6 N -0.726 5.726 7 C 0.526 3.474 8 O -0.528 6.528 9 C -0.067 4.067 10 H 0.119 0.881 11 C -0.057 4.057 12 C -0.118 4.118 13 C -0.097 4.097 14 C -0.112 4.112 15 C -0.120 4.120 16 C -0.084 4.084 17 C -0.128 4.128 18 N -0.663 5.663 19 C 0.051 3.949 20 C 0.441 3.559 21 O -0.583 6.583 22 N -0.565 5.565 23 C -0.298 4.298 24 H 0.103 0.897 25 C 0.021 3.979 26 N -0.903 5.903 27 Si 0.930 3.070 28 H -0.279 1.279 29 H -0.284 1.284 30 H -0.269 1.269 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.063 0.937 38 H 0.397 0.603 39 H 0.110 0.890 40 H 0.096 0.904 41 H 0.120 0.880 42 H 0.127 0.873 43 H 0.128 0.872 44 H 0.119 0.881 45 H 0.350 0.650 46 H 0.086 0.914 47 H 0.043 0.957 48 H 0.392 0.608 49 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.265 -5.816 27.399 28.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.027 4.027 3 H 0.098 0.902 4 C -0.153 4.153 5 C -0.001 4.001 6 N -0.377 5.377 7 C 0.311 3.689 8 O -0.404 6.404 9 C -0.088 4.088 10 H 0.137 0.863 11 C -0.094 4.094 12 C -0.119 4.119 13 C -0.116 4.116 14 C -0.129 4.129 15 C -0.138 4.138 16 C -0.102 4.102 17 C -0.128 4.128 18 N -0.295 5.295 19 C -0.082 4.082 20 C 0.226 3.774 21 O -0.467 6.467 22 N -0.201 5.201 23 C -0.428 4.428 24 H 0.120 0.880 25 C -0.180 4.180 26 N -0.544 5.544 27 Si 0.757 3.243 28 H -0.205 1.205 29 H -0.209 1.209 30 H -0.194 1.194 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.107 0.893 37 H 0.081 0.919 38 H 0.230 0.770 39 H 0.129 0.871 40 H 0.115 0.885 41 H 0.138 0.862 42 H 0.145 0.855 43 H 0.146 0.854 44 H 0.137 0.863 45 H 0.170 0.830 46 H 0.104 0.896 47 H 0.061 0.939 48 H 0.225 0.775 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.706 -6.010 26.861 27.578 hybrid contribution -1.270 0.029 -0.844 1.525 sum 0.436 -5.981 26.017 26.699 Atomic orbital electron populations 1.22514 0.97172 1.02266 1.02211 1.21503 0.92411 0.98169 0.90577 0.90203 1.21743 0.94534 1.01687 0.97343 1.21417 0.93886 0.97183 0.87655 1.46008 1.07159 1.57032 1.27495 1.19992 0.82479 0.79965 0.86427 1.90742 1.55222 1.45474 1.48984 1.21537 0.98772 0.90623 0.97852 0.86273 1.21821 0.93171 0.90427 1.04008 1.22278 0.95286 0.95594 0.98697 1.20313 0.99858 0.90713 1.00666 1.21049 0.94643 0.97537 0.99719 1.21005 0.94329 0.97675 1.00806 1.20281 1.00002 0.90592 0.99367 1.21726 0.95946 0.93254 1.01879 1.60204 1.57565 1.09114 1.02610 1.21700 0.99846 0.95751 0.90916 1.19829 0.85094 0.88253 0.84177 1.90525 1.55229 1.16289 1.84646 1.41867 1.57985 1.12470 1.07817 1.19699 1.40045 0.96409 0.86606 0.87961 1.25257 0.97697 0.95779 0.99261 1.69612 1.48864 1.08854 1.27076 0.85861 0.78860 0.78998 0.80597 1.20465 1.20922 1.19387 0.92323 0.92230 0.92334 0.91516 0.91164 0.89262 0.91902 0.76952 0.87142 0.88524 0.86233 0.85518 0.85435 0.86294 0.83043 0.89623 0.93862 0.77484 0.91912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.76 9.16 37.16 0.34 -1.42 16 2 C 0.08 0.95 2.59 -67.72 -0.18 0.78 16 3 H 0.08 0.89 7.80 -51.93 -0.40 0.49 16 4 C -0.11 -1.09 5.00 -26.73 -0.13 -1.23 16 5 C 0.12 1.47 5.56 -4.04 -0.02 1.45 16 6 N -0.73 -7.45 5.56 -60.29 -0.33 -7.79 16 7 C 0.53 6.53 7.36 -10.98 -0.08 6.45 16 8 O -0.53 -9.00 15.70 5.56 0.09 -8.91 16 9 C -0.07 -0.61 4.33 -92.23 -0.40 -1.01 16 10 H 0.12 0.71 8.14 -51.93 -0.42 0.29 16 11 C -0.06 -0.53 7.77 -27.18 -0.21 -0.74 16 12 C -0.12 -1.24 7.49 -103.79 -0.78 -2.01 16 13 C -0.10 -0.93 10.03 -39.58 -0.40 -1.33 16 14 C -0.11 -0.97 10.04 -39.63 -0.40 -1.37 16 15 C -0.12 -1.06 10.04 -39.63 -0.40 -1.46 16 16 C -0.08 -0.80 10.02 -39.63 -0.40 -1.20 16 17 C -0.13 -1.30 6.98 -103.83 -0.73 -2.03 16 18 N -0.66 -10.34 5.33 -107.99 -0.58 -10.91 16 19 C 0.05 0.89 5.96 -4.97 -0.03 0.86 16 20 C 0.44 10.59 7.82 -10.98 -0.09 10.51 16 21 O -0.58 -16.12 15.78 5.55 0.09 -16.03 16 22 N -0.56 -14.61 5.29 -10.96 -0.06 -14.66 16 23 C -0.30 -8.49 9.68 -14.93 -0.14 -8.63 16 24 H 0.10 3.06 7.16 -52.49 -0.38 2.69 16 25 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 26 N -0.90 -24.97 13.05 55.50 0.72 -24.24 16 27 Si 0.93 21.49 29.55 -169.99 -5.02 16.46 16 28 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 29 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 30 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 31 H 0.06 0.56 8.13 -51.93 -0.42 0.13 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.61 7.45 -51.93 -0.39 0.23 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.09 1.45 7.75 -51.93 -0.40 1.05 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.40 2.77 8.47 -40.82 -0.35 2.43 16 39 H 0.11 1.22 7.04 -51.93 -0.37 0.85 16 40 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 42 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 43 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 44 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 45 H 0.35 5.68 8.17 -39.29 -0.32 5.36 16 46 H 0.09 1.42 8.06 -51.93 -0.42 1.01 16 47 H 0.04 0.68 7.44 -51.93 -0.39 0.30 16 48 H 0.39 9.67 7.90 -40.82 -0.32 9.35 16 49 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 411.69 15.07 6.20 6.20 Total: -1.00 -35.38 411.69 -10.53 -45.92 By element: Atomic # 1 Polarization: 23.37 SS G_CDS: -7.51 Total: 15.85 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: -4.13 Total: -1.89 kcal Atomic # 7 Polarization: -57.36 SS G_CDS: -0.24 Total: -57.60 kcal Atomic # 8 Polarization: -25.12 SS G_CDS: 0.17 Total: -24.94 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -35.38 -10.53 -45.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484997714.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.452 kcal (2) G-P(sol) polarization free energy of solvation -35.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds