Wall clock time and date at job start Wed Apr 1 2020 04:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08995 * 109.47134 * 2 1 4 4 C 1.52995 * 109.47243 * 120.00882 * 2 1 3 5 5 C 1.52998 * 109.47171 * 184.99943 * 4 2 1 6 6 N 1.46497 * 109.47039 * 179.97438 * 5 4 2 7 7 C 1.34783 * 119.99823 * 179.97438 * 6 5 4 8 8 O 1.21281 * 119.99946 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.00030 * 180.02562 * 7 6 5 10 10 H 1.09000 * 112.82549 * 309.66964 * 9 7 6 11 11 C 1.53516 * 113.58798 * 178.56097 * 9 7 6 12 12 C 1.51618 * 87.24260 * 245.40999 * 11 9 7 13 13 C 1.38371 * 147.52284 * 180.02562 * 12 11 9 14 14 C 1.38095 * 120.32512 * 179.97438 * 13 12 11 15 15 C 1.38256 * 119.95369 * 0.02562 * 14 13 12 16 16 C 1.38094 * 119.95310 * 0.02562 * 15 14 13 17 17 C 1.38253 * 120.40973 * 359.92301 * 16 15 14 18 18 N 1.46901 * 109.46830 * 240.00491 * 2 1 3 19 19 C 1.46902 * 110.99844 * 84.99930 * 18 2 1 20 20 C 1.50702 * 109.47027 * 179.97438 * 19 18 2 21 21 O 1.21293 * 120.00255 * 0.02562 * 20 19 18 22 22 N 1.34777 * 119.99928 * 179.72353 * 20 19 18 23 23 C 1.37101 * 120.00327 * 180.27606 * 22 20 19 24 24 H 1.08001 * 119.99426 * 0.02562 * 23 22 20 25 25 C 1.38942 * 120.00412 * 180.02562 * 23 22 20 26 26 N 1.31414 * 120.00005 * 0.02562 * 25 23 22 27 27 Si 1.86803 * 120.00057 * 179.97438 * 25 23 22 28 28 H 1.48498 * 109.46867 * 90.00263 * 27 25 23 29 29 H 1.48501 * 109.47216 * 210.00120 * 27 25 23 30 30 H 1.48499 * 109.47135 * 330.00462 * 27 25 23 31 31 H 1.09000 * 109.47422 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47089 * 299.99716 * 1 2 3 33 33 H 1.09004 * 109.47615 * 59.99461 * 1 2 3 34 34 H 1.09001 * 109.47062 * 304.99629 * 4 2 1 35 35 H 1.08999 * 109.47071 * 64.99373 * 4 2 1 36 36 H 1.09001 * 109.46871 * 299.99803 * 5 4 2 37 37 H 1.08999 * 109.47588 * 59.99746 * 5 4 2 38 38 H 0.97000 * 120.00638 * 0.02562 * 6 5 4 39 39 H 1.09003 * 113.58902 * 359.97438 * 11 9 7 40 40 H 1.08990 * 113.58987 * 130.82092 * 11 9 7 41 41 H 1.07999 * 119.84015 * 359.95668 * 13 12 11 42 42 H 1.07995 * 120.02294 * 180.02562 * 14 13 12 43 43 H 1.08000 * 120.02293 * 179.97438 * 15 14 13 44 44 H 1.07997 * 119.83447 * 180.02562 * 16 15 14 45 45 H 1.00902 * 111.00235 * 321.05167 * 18 2 1 46 46 H 1.09004 * 109.47131 * 60.00016 * 19 18 2 47 47 H 1.09000 * 109.47732 * 300.00127 * 19 18 2 48 48 H 0.97000 * 120.00317 * 0.28382 * 22 20 19 49 49 H 0.96996 * 120.00330 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5648 -0.6135 1.3135 6 7 4.0531 -1.3037 2.5099 7 6 5.3740 -1.3399 2.7751 8 8 6.1584 -0.8006 2.0235 9 6 5.8764 -2.0504 4.0055 10 1 5.3518 -1.7486 4.9119 11 6 7.4051 -2.0308 4.1451 12 6 7.3679 -3.5355 3.9629 13 6 8.0790 -4.7200 3.8863 14 6 7.4203 -5.9170 3.6852 15 6 6.0437 -5.9346 3.5589 16 6 5.3293 -4.7551 3.6335 17 6 5.9819 -3.5533 3.8357 18 7 2.0196 -0.6924 -1.1995 19 6 2.0823 0.2228 -2.3469 20 6 2.5883 -0.5212 -3.5558 21 8 2.8686 -1.6982 -3.4702 22 7 2.7236 0.1198 -4.7337 23 6 3.1785 -0.5584 -5.8350 24 1 3.4281 -1.6064 -5.7586 25 6 3.3185 0.1025 -7.0491 26 7 3.0153 1.3778 -7.1418 27 14 3.9390 -0.8215 -8.5493 28 1 2.7871 -1.4047 -9.2829 29 1 4.6702 0.1151 -9.4401 30 1 4.8531 -1.9093 -8.1177 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 1.6054 -0.2620 2.1369 35 1 1.7515 -1.7716 1.2053 36 1 3.9994 -1.0729 0.4257 37 1 3.8532 0.4368 1.3573 38 1 3.4258 -1.7354 3.1108 39 1 7.9105 -1.5060 3.3342 40 1 7.7490 -1.7192 5.1312 41 1 9.1545 -4.7084 3.9841 42 1 7.9802 -6.8386 3.6266 43 1 5.5274 -6.8700 3.4011 44 1 4.2539 -4.7712 3.5349 45 1 1.4494 -1.4978 -1.4103 46 1 2.7587 1.0464 -2.1182 47 1 1.0869 0.6166 -2.5525 48 1 2.4992 1.0610 -4.8023 49 1 3.1133 1.8393 -7.9893 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484997714.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:07 Heat of formation + Delta-G solvation = -43.786782 kcal Electronic energy + Delta-G solvation = -28802.669377 eV Core-core repulsion = 24729.235338 eV Total energy + Delta-G solvation = -4073.434039 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.92241 -40.27517 -39.97449 -38.32022 -36.27163 -36.01877 -35.72262 -33.33723 -32.62203 -31.75091 -30.05673 -28.48213 -27.96628 -26.41758 -25.71279 -24.03460 -22.89773 -22.10227 -21.66576 -21.13449 -20.59202 -19.92833 -18.46698 -17.76003 -17.64602 -17.04045 -16.90658 -16.64066 -16.37840 -16.17982 -15.98957 -15.70824 -15.46540 -15.26277 -15.17605 -14.54342 -14.33911 -14.07022 -13.92426 -13.87973 -13.61458 -13.51676 -13.48913 -13.11947 -13.01055 -12.89283 -12.84990 -12.67045 -12.44384 -12.23689 -12.18804 -12.11164 -11.94749 -11.73667 -11.52231 -11.49940 -11.03349 -10.36197 -10.09684 -10.03131 -9.80211 -9.52979 -9.24646 -8.48345 -5.97214 0.29034 0.43219 1.36169 1.39630 1.52238 1.52853 2.03973 2.16913 2.27851 2.80214 2.94561 3.12911 3.18760 3.40138 3.41846 3.54646 3.83737 3.88451 4.14309 4.17996 4.19731 4.22844 4.27604 4.34750 4.45180 4.49203 4.55712 4.60812 4.63212 4.68542 4.75139 4.79263 4.90847 4.93185 5.00704 5.03521 5.13983 5.19949 5.24981 5.32378 5.39005 5.44569 5.48273 5.55617 5.71453 5.91038 6.03912 6.14216 6.46448 6.54065 6.58627 7.10970 7.23408 7.54641 8.10271 8.69160 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010263 B = 0.002067 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2727.588229 B =13545.486615 C =15053.376432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.083 3.917 3 H 0.083 0.917 4 C -0.102 4.102 5 C 0.127 3.873 6 N -0.710 5.710 7 C 0.520 3.480 8 O -0.584 6.584 9 C -0.055 4.055 10 H 0.158 0.842 11 C -0.057 4.057 12 C -0.143 4.143 13 C -0.113 4.113 14 C -0.118 4.118 15 C -0.129 4.129 16 C -0.097 4.097 17 C -0.143 4.143 18 N -0.679 5.679 19 C 0.067 3.933 20 C 0.436 3.564 21 O -0.624 6.624 22 N -0.574 5.574 23 C -0.334 4.334 24 H 0.077 0.923 25 C -0.014 4.014 26 N -0.920 5.920 27 Si 0.993 3.007 28 H -0.268 1.268 29 H -0.270 1.270 30 H -0.275 1.275 31 H 0.060 0.940 32 H 0.084 0.916 33 H 0.049 0.951 34 H 0.104 0.896 35 H 0.074 0.926 36 H 0.042 0.958 37 H 0.054 0.946 38 H 0.417 0.583 39 H 0.085 0.915 40 H 0.125 0.875 41 H 0.132 0.868 42 H 0.149 0.851 43 H 0.149 0.851 44 H 0.135 0.865 45 H 0.344 0.656 46 H 0.098 0.902 47 H 0.068 0.932 48 H 0.396 0.604 49 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.107 -5.931 29.133 29.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.027 4.027 3 H 0.101 0.899 4 C -0.140 4.140 5 C 0.003 3.997 6 N -0.361 5.361 7 C 0.307 3.693 8 O -0.464 6.464 9 C -0.076 4.076 10 H 0.176 0.824 11 C -0.094 4.094 12 C -0.143 4.143 13 C -0.131 4.131 14 C -0.136 4.136 15 C -0.147 4.147 16 C -0.115 4.115 17 C -0.144 4.144 18 N -0.312 5.312 19 C -0.066 4.066 20 C 0.224 3.776 21 O -0.511 6.511 22 N -0.212 5.212 23 C -0.464 4.464 24 H 0.095 0.905 25 C -0.213 4.213 26 N -0.561 5.561 27 Si 0.817 3.183 28 H -0.193 1.193 29 H -0.194 1.194 30 H -0.200 1.200 31 H 0.079 0.921 32 H 0.103 0.897 33 H 0.068 0.932 34 H 0.122 0.878 35 H 0.092 0.908 36 H 0.060 0.940 37 H 0.073 0.927 38 H 0.254 0.746 39 H 0.103 0.897 40 H 0.143 0.857 41 H 0.150 0.850 42 H 0.167 0.833 43 H 0.167 0.833 44 H 0.153 0.847 45 H 0.163 0.837 46 H 0.116 0.884 47 H 0.086 0.914 48 H 0.230 0.770 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.280 -6.110 28.640 29.286 hybrid contribution -0.832 0.026 -1.339 1.577 sum -0.551 -6.084 27.301 27.976 Atomic orbital electron populations 1.22427 0.95284 1.02675 1.03022 1.21649 0.93866 0.98077 0.89138 0.89873 1.21688 0.92220 1.02187 0.97897 1.21213 0.95647 0.96250 0.86581 1.45876 1.07060 1.56219 1.26989 1.20644 0.82568 0.79251 0.86842 1.90718 1.56668 1.48002 1.51044 1.21544 0.98903 0.89656 0.97454 0.82448 1.21846 0.93284 0.89694 1.04610 1.22586 0.95917 0.96349 0.99491 1.20624 1.00785 0.90927 1.00763 1.21404 0.95028 0.98178 0.98948 1.21373 0.94631 0.98456 1.00213 1.20601 1.01098 0.90621 0.99207 1.21921 0.96076 0.93837 1.02525 1.60210 1.58696 1.09159 1.03092 1.21527 1.00914 0.95319 0.88802 1.20973 0.83367 0.88053 0.85224 1.90489 1.56627 1.18428 1.85516 1.41948 1.58507 1.12620 1.08102 1.19650 1.42403 0.95894 0.88442 0.90513 1.26050 0.97198 0.96662 1.01426 1.69670 1.48681 1.09663 1.28099 0.84931 0.78484 0.77802 0.77133 1.19346 1.19444 1.20000 0.92135 0.89675 0.93236 0.87801 0.90771 0.93994 0.92730 0.74640 0.89694 0.85658 0.84997 0.83313 0.83332 0.84665 0.83670 0.88420 0.91385 0.76984 0.91266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.87 9.16 71.98 0.66 -2.21 16 2 C 0.08 1.71 2.59 44.91 0.12 1.82 16 3 H 0.08 1.69 7.80 -2.39 -0.02 1.67 16 4 C -0.10 -1.70 5.00 30.59 0.15 -1.55 16 5 C 0.13 3.04 5.56 86.38 0.48 3.52 16 6 N -0.71 -13.88 5.56 -463.06 -2.57 -16.45 16 7 C 0.52 12.93 7.36 87.66 0.65 13.57 16 8 O -0.58 -20.94 15.70 -3.03 -0.05 -20.98 16 9 C -0.05 -0.94 4.33 -11.84 -0.05 -1.00 16 10 H 0.16 1.42 8.14 -2.39 -0.02 1.40 16 11 C -0.06 -1.05 7.77 30.31 0.24 -0.81 16 12 C -0.14 -2.96 7.49 -19.32 -0.14 -3.11 16 13 C -0.11 -2.12 10.03 22.27 0.22 -1.89 16 14 C -0.12 -1.93 10.04 22.24 0.22 -1.71 16 15 C -0.13 -2.11 10.04 22.24 0.22 -1.89 16 16 C -0.10 -1.73 10.02 22.24 0.22 -1.51 16 17 C -0.14 -2.81 6.98 -19.35 -0.14 -2.94 16 18 N -0.68 -21.00 5.33 -495.58 -2.64 -23.64 16 19 C 0.07 2.34 5.96 85.56 0.51 2.85 16 20 C 0.44 21.51 7.82 87.66 0.69 22.20 16 21 O -0.62 -35.86 15.78 -3.07 -0.05 -35.91 16 22 N -0.57 -30.53 5.29 -306.98 -1.62 -32.15 16 23 C -0.33 -19.62 9.68 84.04 0.81 -18.81 16 24 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 25 C -0.01 -0.75 5.50 84.92 0.47 -0.29 16 26 N -0.92 -50.81 13.05 21.66 0.28 -50.52 16 27 Si 0.99 44.16 29.55 68.60 2.03 46.19 16 28 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 29 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 30 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 31 H 0.06 0.98 8.13 -2.39 -0.02 0.96 16 32 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.05 0.91 7.45 -2.38 -0.02 0.90 16 34 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.04 1.42 7.75 -2.39 -0.02 1.41 16 37 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.42 4.80 8.47 -92.71 -0.79 4.01 16 39 H 0.08 2.01 7.04 -2.39 -0.02 1.99 16 40 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.13 1.98 8.06 -2.91 -0.02 1.96 16 42 H 0.15 1.65 8.06 -2.91 -0.02 1.62 16 43 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 44 H 0.14 1.83 8.06 -2.91 -0.02 1.80 16 45 H 0.34 11.18 8.17 -89.69 -0.73 10.45 16 46 H 0.10 3.20 8.06 -2.38 -0.02 3.18 16 47 H 0.07 2.06 7.44 -2.39 -0.02 2.04 16 48 H 0.40 19.94 7.90 -92.71 -0.73 19.21 16 49 H 0.28 14.32 8.31 -92.71 -0.77 13.55 16 Total: -1.00 -81.09 411.69 -0.55 -81.64 By element: Atomic # 1 Polarization: 46.83 SS G_CDS: -1.26 Total: 45.57 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: 5.33 Total: 6.25 kcal Atomic # 7 Polarization: -116.21 SS G_CDS: -6.55 Total: -122.76 kcal Atomic # 8 Polarization: -56.80 SS G_CDS: -0.10 Total: -56.90 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -81.09 -0.55 -81.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484997714.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.858 kcal (2) G-P(sol) polarization free energy of solvation -81.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds