Wall clock time and date at job start Wed Apr 1 2020 03:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47387 * 2 1 4 4 N 1.46507 * 109.47165 * 239.99505 * 2 1 3 5 5 C 1.34774 * 119.99623 * 84.99889 * 4 2 1 6 6 O 1.21356 * 119.99935 * 0.02562 * 5 4 2 7 7 C 1.49355 * 119.99883 * 180.02562 * 5 4 2 8 8 O 1.21376 * 119.99500 * 0.02562 * 7 5 4 9 9 N 1.34771 * 119.99991 * 180.02562 * 7 5 4 10 10 C 1.39730 * 119.99898 * 174.07848 * 9 7 5 11 11 C 1.38927 * 120.07271 * 213.64089 * 10 9 7 12 12 C 1.38100 * 119.92273 * 179.76559 * 11 10 9 13 13 C 1.38293 * 120.07545 * 0.48475 * 12 11 10 14 14 C 1.38295 * 120.15081 * 359.78899 * 13 12 11 15 15 C 1.38100 * 120.07438 * 359.95337 * 14 13 12 16 16 C 1.53005 * 109.47245 * 119.99617 * 2 1 3 17 17 C 1.53044 * 109.46008 * 300.00263 * 16 2 1 18 18 C 1.53194 * 109.31186 * 181.38478 * 17 16 2 19 19 N 1.46925 * 108.77304 * 305.36231 * 18 17 16 20 20 C 1.36938 * 120.63102 * 233.58744 * 19 18 17 21 21 H 1.08001 * 119.99755 * 37.54090 * 20 19 18 22 22 C 1.38812 * 120.00113 * 217.55320 * 20 19 18 23 23 N 1.31616 * 120.00134 * 19.81321 * 22 20 19 24 24 Si 1.86798 * 119.99866 * 199.54827 * 22 20 19 25 25 H 1.48500 * 109.47182 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.47518 * 119.99502 * 24 22 20 27 27 H 1.48501 * 109.47013 * 239.99529 * 24 22 20 28 28 C 1.46924 * 118.74154 * 53.86074 * 19 18 17 29 29 C 1.53046 * 109.45874 * 60.06567 * 16 2 1 30 30 H 1.08997 * 109.47392 * 60.00154 * 1 2 3 31 31 H 1.09002 * 109.47515 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46973 * 299.99970 * 1 2 3 33 33 H 0.96999 * 119.99931 * 265.00037 * 4 2 1 34 34 H 0.97002 * 120.00204 * 354.07052 * 9 7 5 35 35 H 1.08009 * 120.04078 * 359.97438 * 11 10 9 36 36 H 1.08000 * 119.96335 * 180.24941 * 12 11 10 37 37 H 1.07998 * 119.92711 * 179.76414 * 13 12 11 38 38 H 1.07996 * 119.96408 * 179.97438 * 14 13 12 39 39 H 1.08001 * 120.03493 * 180.02562 * 15 14 13 40 40 H 1.08995 * 109.45214 * 180.02562 * 16 2 1 41 41 H 1.08995 * 109.50036 * 61.43177 * 17 16 2 42 42 H 1.08994 * 109.51766 * 301.35165 * 17 16 2 43 43 H 1.08996 * 109.58347 * 185.57775 * 18 17 16 44 44 H 1.09002 * 109.70397 * 65.21529 * 18 17 16 45 45 H 0.96999 * 119.99871 * 5.72230 * 23 22 20 46 46 H 1.09002 * 109.58863 * 65.92692 * 28 19 18 47 47 H 1.08999 * 109.59053 * 186.34648 * 28 19 18 48 48 H 1.09002 * 109.49870 * 298.56849 * 29 16 2 49 49 H 1.09001 * 109.49388 * 58.63354 * 29 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1470 -0.0184 -2.3571 6 8 1.8588 1.1591 -2.4115 7 6 2.6443 -0.7227 -3.5767 8 8 2.9321 -1.9006 -3.5223 9 7 2.7735 -0.0503 -4.7376 10 6 3.3539 -0.6737 -5.8452 11 6 4.1135 0.0668 -6.7422 12 6 4.6898 -0.5534 -7.8332 13 6 4.5031 -1.9082 -8.0389 14 6 3.7428 -2.6473 -7.1510 15 6 3.1681 -2.0344 -6.0550 16 6 2.0400 -0.7212 1.2493 17 6 1.5297 0.0005 2.4987 18 6 2.0706 -0.7037 3.7470 19 7 1.7085 -2.1262 3.6817 20 6 1.0454 -2.7258 4.7190 21 1 0.2850 -2.1821 5.2599 22 6 1.3507 -4.0322 5.0753 23 7 2.4991 -4.5623 4.7115 24 14 0.1347 -5.0353 6.0775 25 1 -1.0690 -4.2136 6.3623 26 1 -0.2607 -6.2440 5.3107 27 1 0.7674 -5.4457 7.3568 28 6 2.0768 -2.8947 2.4848 29 6 1.5311 -2.1645 1.2483 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.2490 -1.6319 -1.1525 34 1 2.4634 0.8664 -4.8042 35 1 4.2561 1.1258 -6.5846 36 1 5.2838 0.0209 -8.5288 37 1 4.9517 -2.3901 -8.8950 38 1 3.5986 -3.7050 -7.3148 39 1 2.5748 -2.6123 -5.3618 40 1 3.1300 -0.7206 1.2492 41 1 0.4400 -0.0214 2.5120 42 1 1.8726 1.0350 2.4873 43 1 1.6316 -0.2556 4.6384 44 1 3.1554 -0.6042 3.7842 45 1 3.1663 -4.0161 4.2672 46 1 3.1622 -2.9700 2.4186 47 1 1.6422 -3.8926 2.5432 48 1 0.4413 -2.1661 1.2733 49 1 1.8750 -2.6709 0.3464 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486446976.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:09 Heat of formation + Delta-G solvation = -27.008270 kcal Electronic energy + Delta-G solvation = -29904.516893 eV Core-core repulsion = 25831.810425 eV Total energy + Delta-G solvation = -4072.706468 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.36487 -39.90924 -38.68127 -38.04749 -35.85989 -35.11163 -33.12883 -31.28236 -31.07287 -30.19659 -30.09901 -28.78671 -25.94304 -25.08381 -23.48266 -23.12799 -22.63631 -22.04028 -20.74153 -20.36711 -19.15356 -18.70919 -17.81450 -17.25580 -17.02886 -16.41657 -16.18187 -15.75963 -14.96885 -14.81748 -14.62333 -14.38668 -14.29180 -14.09550 -13.90058 -13.70342 -13.57100 -13.38047 -13.16354 -12.82921 -12.80239 -12.36322 -12.23118 -11.93340 -11.72063 -11.57995 -11.54370 -11.26607 -11.01266 -10.79417 -10.68828 -10.40393 -10.31517 -10.10938 -10.00356 -9.78233 -9.72990 -9.33417 -9.27968 -9.18918 -8.58012 -8.39699 -6.82085 -6.02628 -3.36241 0.69043 1.04916 1.32357 2.02526 2.90196 3.31603 3.47266 3.48972 3.51894 3.65106 4.14999 4.53898 4.57214 4.60200 4.81482 4.82615 4.98003 5.04453 5.12979 5.14765 5.19668 5.28829 5.44250 5.47890 5.56188 5.65229 5.68063 5.82487 5.86080 5.92169 5.94228 5.96927 6.08853 6.11203 6.17046 6.19803 6.23066 6.33946 6.41319 6.51945 6.57059 6.60940 6.69604 6.71986 6.82751 7.01645 7.11506 7.16192 7.42401 7.73290 8.08912 8.60624 9.12991 9.82725 10.31818 11.20827 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018311 B = 0.002077 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.757079 B =13479.342844 C =14481.035568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.144 3.856 3 H 0.089 0.911 4 N -0.685 5.685 5 C 0.509 3.491 6 O -0.523 6.523 7 C 0.508 3.492 8 O -0.495 6.495 9 N -0.647 5.647 10 C 0.139 3.861 11 C -0.141 4.141 12 C -0.102 4.102 13 C -0.133 4.133 14 C -0.101 4.101 15 C -0.122 4.122 16 C -0.086 4.086 17 C -0.125 4.125 18 C 0.146 3.854 19 N -0.597 5.597 20 C -0.350 4.350 21 H 0.051 0.949 22 C -0.021 4.021 23 N -0.916 5.916 24 Si 1.073 2.927 25 H -0.292 1.292 26 H -0.290 1.290 27 H -0.293 1.293 28 C 0.155 3.845 29 C -0.134 4.134 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.414 0.586 34 H 0.423 0.577 35 H 0.128 0.872 36 H 0.127 0.873 37 H 0.124 0.876 38 H 0.127 0.873 39 H 0.143 0.857 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.053 0.947 43 H 0.056 0.944 44 H 0.015 0.985 45 H 0.270 0.730 46 H 0.017 0.983 47 H 0.071 0.929 48 H 0.066 0.934 49 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.371 9.945 -23.853 25.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.040 3.960 3 H 0.107 0.893 4 N -0.338 5.338 5 C 0.288 3.712 6 O -0.400 6.400 7 C 0.290 3.710 8 O -0.368 6.368 9 N -0.293 5.293 10 C 0.045 3.955 11 C -0.161 4.161 12 C -0.121 4.121 13 C -0.152 4.152 14 C -0.120 4.120 15 C -0.141 4.141 16 C -0.105 4.105 17 C -0.165 4.165 18 C 0.020 3.980 19 N -0.321 5.321 20 C -0.480 4.480 21 H 0.069 0.931 22 C -0.224 4.224 23 N -0.555 5.555 24 Si 0.902 3.098 25 H -0.218 1.218 26 H -0.216 1.216 27 H -0.220 1.220 28 C 0.029 3.971 29 C -0.173 4.173 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.252 0.748 34 H 0.261 0.739 35 H 0.145 0.855 36 H 0.145 0.855 37 H 0.142 0.858 38 H 0.145 0.855 39 H 0.160 0.840 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.072 0.928 43 H 0.075 0.925 44 H 0.033 0.967 45 H 0.081 0.919 46 H 0.035 0.965 47 H 0.090 0.910 48 H 0.085 0.915 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.049 8.445 -23.067 24.586 hybrid contribution 0.371 1.588 -0.698 1.774 sum 1.420 10.032 -23.765 25.835 Atomic orbital electron populations 1.22244 0.94652 1.02938 1.02375 1.21308 0.94738 0.96954 0.82969 0.89307 1.46087 1.63668 1.15267 1.08765 1.19780 0.79810 0.87029 0.84564 1.90766 1.49340 1.15110 1.84781 1.20464 0.78916 0.87151 0.84509 1.90783 1.46512 1.14850 1.84701 1.43122 1.59069 1.18122 1.09020 1.17789 0.96595 0.93038 0.88065 1.20944 0.98605 1.00323 0.96257 1.20958 0.99188 0.94899 0.97057 1.21208 0.99847 0.94288 0.99860 1.21120 0.96904 1.00150 0.93824 1.21418 1.00930 0.93608 0.98189 1.21335 1.00245 0.96224 0.92724 1.22064 1.01241 0.97714 0.95438 1.20928 0.96012 0.86341 0.94724 1.44053 1.67468 1.05206 1.15406 1.19948 1.16068 1.00183 1.11809 0.93141 1.26044 0.99275 0.97420 0.99639 1.70714 1.04585 1.40318 1.39918 0.83418 0.74724 0.75625 0.75989 1.21780 1.21648 1.22009 1.20976 0.96069 0.95510 0.84562 1.22286 1.01374 0.94438 0.99232 0.92730 0.91635 0.90687 0.74811 0.73918 0.85453 0.85511 0.85843 0.85476 0.83965 0.91172 0.91564 0.92847 0.92543 0.96746 0.91940 0.96491 0.91018 0.91531 0.93556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 8.78 37.16 0.33 -1.75 16 2 C 0.14 1.88 2.40 -67.93 -0.16 1.72 16 3 H 0.09 1.19 7.58 -51.93 -0.39 0.80 16 4 N -0.68 -8.62 4.99 -54.26 -0.27 -8.89 16 5 C 0.51 6.41 7.85 -11.63 -0.09 6.32 16 6 O -0.52 -7.31 16.15 5.49 0.09 -7.22 16 7 C 0.51 6.04 7.74 -11.63 -0.09 5.95 16 8 O -0.50 -6.82 13.80 5.47 0.08 -6.74 16 9 N -0.65 -6.29 5.32 -10.30 -0.05 -6.34 16 10 C 0.14 1.37 6.32 -83.75 -0.53 0.84 16 11 C -0.14 -1.11 9.97 -39.38 -0.39 -1.51 16 12 C -0.10 -0.72 10.04 -39.61 -0.40 -1.12 16 13 C -0.13 -0.97 10.04 -39.54 -0.40 -1.37 16 14 C -0.10 -0.86 10.04 -39.61 -0.40 -1.26 16 15 C -0.12 -1.26 8.72 -39.38 -0.34 -1.61 16 16 C -0.09 -1.30 2.14 -90.57 -0.19 -1.50 16 17 C -0.12 -2.01 4.96 -26.61 -0.13 -2.14 16 18 C 0.15 2.98 6.51 -3.71 -0.02 2.96 16 19 N -0.60 -14.51 2.72 -172.06 -0.47 -14.98 16 20 C -0.35 -9.62 9.42 -15.06 -0.14 -9.76 16 21 H 0.05 1.41 7.90 -52.49 -0.41 0.99 16 22 C -0.02 -0.58 4.78 -17.43 -0.08 -0.67 16 23 N -0.92 -27.28 12.73 55.49 0.71 -26.58 16 24 Si 1.07 25.14 29.96 -169.99 -5.09 20.05 16 25 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 26 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 27 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 28 C 0.15 3.47 4.76 -3.49 -0.02 3.45 16 29 C -0.13 -2.30 4.83 -26.39 -0.13 -2.43 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.86 6.46 -51.93 -0.34 0.52 16 32 H 0.07 0.93 6.46 -51.93 -0.34 0.59 16 33 H 0.41 5.16 6.31 -40.82 -0.26 4.90 16 34 H 0.42 3.32 8.30 -40.82 -0.34 2.98 16 35 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 36 H 0.13 0.59 8.06 -52.49 -0.42 0.16 16 37 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 38 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 39 H 0.14 1.64 6.09 -52.49 -0.32 1.32 16 40 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.07 1.09 6.51 -51.93 -0.34 0.75 16 42 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 44 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.27 8.09 6.69 -40.82 -0.27 7.82 16 46 H 0.02 0.40 7.78 -51.93 -0.40 -0.01 16 47 H 0.07 1.81 6.86 -51.93 -0.36 1.46 16 48 H 0.07 1.18 6.51 -51.93 -0.34 0.84 16 49 H 0.05 0.70 6.46 -51.93 -0.34 0.37 16 LS Contribution 388.96 15.07 5.86 5.86 Total: -1.00 -31.87 388.96 -9.38 -41.25 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -7.03 Total: 7.47 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: -3.20 Total: -3.88 kcal Atomic # 7 Polarization: -56.70 SS G_CDS: -0.09 Total: -56.79 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: 0.16 Total: -13.96 kcal Atomic # 14 Polarization: 25.14 SS G_CDS: -5.09 Total: 20.05 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.87 -9.38 -41.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486446976.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.238 kcal (2) G-P(sol) polarization free energy of solvation -31.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds