Wall clock time and date at job start Wed Apr 1 2020 03:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47387 * 2 1 4 4 N 1.46507 * 109.47165 * 239.99505 * 2 1 3 5 5 C 1.34774 * 119.99623 * 84.99889 * 4 2 1 6 6 O 1.21356 * 119.99935 * 0.02562 * 5 4 2 7 7 C 1.49355 * 119.99883 * 180.02562 * 5 4 2 8 8 O 1.21376 * 119.99500 * 0.02562 * 7 5 4 9 9 N 1.34771 * 119.99991 * 180.02562 * 7 5 4 10 10 C 1.39730 * 119.99898 * 174.07848 * 9 7 5 11 11 C 1.38927 * 120.07271 * 213.64089 * 10 9 7 12 12 C 1.38100 * 119.92273 * 179.76559 * 11 10 9 13 13 C 1.38293 * 120.07545 * 0.48475 * 12 11 10 14 14 C 1.38295 * 120.15081 * 359.78899 * 13 12 11 15 15 C 1.38100 * 120.07438 * 359.95337 * 14 13 12 16 16 C 1.53005 * 109.47245 * 119.99617 * 2 1 3 17 17 C 1.53044 * 109.46008 * 300.00263 * 16 2 1 18 18 C 1.53194 * 109.31186 * 181.38478 * 17 16 2 19 19 N 1.46925 * 108.77304 * 305.36231 * 18 17 16 20 20 C 1.36938 * 120.63102 * 233.58744 * 19 18 17 21 21 H 1.08001 * 119.99755 * 37.54090 * 20 19 18 22 22 C 1.38812 * 120.00113 * 217.55320 * 20 19 18 23 23 N 1.31616 * 120.00134 * 19.81321 * 22 20 19 24 24 Si 1.86798 * 119.99866 * 199.54827 * 22 20 19 25 25 H 1.48500 * 109.47182 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.47518 * 119.99502 * 24 22 20 27 27 H 1.48501 * 109.47013 * 239.99529 * 24 22 20 28 28 C 1.46924 * 118.74154 * 53.86074 * 19 18 17 29 29 C 1.53046 * 109.45874 * 60.06567 * 16 2 1 30 30 H 1.08997 * 109.47392 * 60.00154 * 1 2 3 31 31 H 1.09002 * 109.47515 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46973 * 299.99970 * 1 2 3 33 33 H 0.96999 * 119.99931 * 265.00037 * 4 2 1 34 34 H 0.97002 * 120.00204 * 354.07052 * 9 7 5 35 35 H 1.08009 * 120.04078 * 359.97438 * 11 10 9 36 36 H 1.08000 * 119.96335 * 180.24941 * 12 11 10 37 37 H 1.07998 * 119.92711 * 179.76414 * 13 12 11 38 38 H 1.07996 * 119.96408 * 179.97438 * 14 13 12 39 39 H 1.08001 * 120.03493 * 180.02562 * 15 14 13 40 40 H 1.08995 * 109.45214 * 180.02562 * 16 2 1 41 41 H 1.08995 * 109.50036 * 61.43177 * 17 16 2 42 42 H 1.08994 * 109.51766 * 301.35165 * 17 16 2 43 43 H 1.08996 * 109.58347 * 185.57775 * 18 17 16 44 44 H 1.09002 * 109.70397 * 65.21529 * 18 17 16 45 45 H 0.96999 * 119.99871 * 5.72230 * 23 22 20 46 46 H 1.09002 * 109.58863 * 65.92692 * 28 19 18 47 47 H 1.08999 * 109.59053 * 186.34648 * 28 19 18 48 48 H 1.09002 * 109.49870 * 298.56849 * 29 16 2 49 49 H 1.09001 * 109.49388 * 58.63354 * 29 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1470 -0.0184 -2.3571 6 8 1.8588 1.1591 -2.4115 7 6 2.6443 -0.7227 -3.5767 8 8 2.9321 -1.9006 -3.5223 9 7 2.7735 -0.0503 -4.7376 10 6 3.3539 -0.6737 -5.8452 11 6 4.1135 0.0668 -6.7422 12 6 4.6898 -0.5534 -7.8332 13 6 4.5031 -1.9082 -8.0389 14 6 3.7428 -2.6473 -7.1510 15 6 3.1681 -2.0344 -6.0550 16 6 2.0400 -0.7212 1.2493 17 6 1.5297 0.0005 2.4987 18 6 2.0706 -0.7037 3.7470 19 7 1.7085 -2.1262 3.6817 20 6 1.0454 -2.7258 4.7190 21 1 0.2850 -2.1821 5.2599 22 6 1.3507 -4.0322 5.0753 23 7 2.4991 -4.5623 4.7115 24 14 0.1347 -5.0353 6.0775 25 1 -1.0690 -4.2136 6.3623 26 1 -0.2607 -6.2440 5.3107 27 1 0.7674 -5.4457 7.3568 28 6 2.0768 -2.8947 2.4848 29 6 1.5311 -2.1645 1.2483 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.2490 -1.6319 -1.1525 34 1 2.4634 0.8664 -4.8042 35 1 4.2561 1.1258 -6.5846 36 1 5.2838 0.0209 -8.5288 37 1 4.9517 -2.3901 -8.8950 38 1 3.5986 -3.7050 -7.3148 39 1 2.5748 -2.6123 -5.3618 40 1 3.1300 -0.7206 1.2492 41 1 0.4400 -0.0214 2.5120 42 1 1.8726 1.0350 2.4873 43 1 1.6316 -0.2556 4.6384 44 1 3.1554 -0.6042 3.7842 45 1 3.1663 -4.0161 4.2672 46 1 3.1622 -2.9700 2.4186 47 1 1.6422 -3.8926 2.5432 48 1 0.4413 -2.1661 1.2733 49 1 1.8750 -2.6709 0.3464 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486446976.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:08 Heat of formation + Delta-G solvation = -46.803092 kcal Electronic energy + Delta-G solvation = -29905.375261 eV Core-core repulsion = 25831.810425 eV Total energy + Delta-G solvation = -4073.564836 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.27031 -40.86957 -39.75708 -39.12831 -37.20805 -36.06373 -34.67603 -32.65598 -31.87547 -31.76981 -30.85554 -30.20689 -27.16558 -26.52567 -24.83629 -24.12052 -23.82151 -23.06374 -22.09183 -21.36265 -20.39653 -19.90278 -19.19387 -18.55553 -17.89388 -17.28403 -17.04237 -16.72994 -16.28112 -16.06614 -15.81963 -15.71292 -15.43284 -15.37893 -15.11269 -14.99810 -14.83056 -14.34959 -14.31181 -14.10763 -13.80274 -13.67986 -13.43175 -13.12999 -12.94659 -12.74204 -12.67475 -12.49327 -12.41709 -12.24055 -11.90637 -11.88067 -11.72062 -11.59130 -11.51884 -11.31998 -11.01416 -10.77014 -10.51235 -10.36777 -9.90372 -9.26660 -8.88159 -8.16732 -5.52543 -0.12027 0.43094 0.53207 1.12819 1.57618 1.65612 1.81372 1.95839 2.43444 2.64413 2.83786 3.20817 3.24659 3.53047 3.67534 3.75305 3.91536 3.96119 4.03622 4.24621 4.29107 4.32531 4.43360 4.45147 4.48616 4.50794 4.54349 4.54968 4.64518 4.77836 4.85628 4.91521 5.02930 5.08199 5.09761 5.11012 5.18566 5.22310 5.23026 5.25297 5.26048 5.30471 5.48564 5.58861 5.59376 5.81479 5.91384 6.02876 6.18863 6.41891 6.55744 6.75500 7.11113 7.77056 8.25875 8.99954 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018311 B = 0.002077 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.757079 B =13479.342844 C =14481.035568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.155 3.845 3 H 0.096 0.904 4 N -0.685 5.685 5 C 0.514 3.486 6 O -0.535 6.535 7 C 0.508 3.492 8 O -0.520 6.520 9 N -0.633 5.633 10 C 0.115 3.885 11 C -0.141 4.141 12 C -0.102 4.102 13 C -0.132 4.132 14 C -0.112 4.112 15 C -0.145 4.145 16 C -0.077 4.077 17 C -0.113 4.113 18 C 0.140 3.860 19 N -0.616 5.616 20 C -0.353 4.353 21 H 0.045 0.955 22 C -0.074 4.074 23 N -0.944 5.944 24 Si 1.120 2.880 25 H -0.272 1.272 26 H -0.287 1.287 27 H -0.291 1.291 28 C 0.160 3.840 29 C -0.119 4.119 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.080 0.920 33 H 0.414 0.586 34 H 0.431 0.569 35 H 0.148 0.852 36 H 0.157 0.843 37 H 0.149 0.851 38 H 0.139 0.861 39 H 0.122 0.878 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.085 0.915 43 H 0.050 0.950 44 H 0.010 0.990 45 H 0.254 0.746 46 H 0.001 0.999 47 H 0.034 0.966 48 H 0.065 0.935 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.162 11.695 -25.947 28.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.051 3.949 3 H 0.114 0.886 4 N -0.337 5.337 5 C 0.294 3.706 6 O -0.412 6.412 7 C 0.290 3.710 8 O -0.395 6.395 9 N -0.280 5.280 10 C 0.022 3.978 11 C -0.160 4.160 12 C -0.121 4.121 13 C -0.150 4.150 14 C -0.131 4.131 15 C -0.165 4.165 16 C -0.096 4.096 17 C -0.152 4.152 18 C 0.015 3.985 19 N -0.341 5.341 20 C -0.483 4.483 21 H 0.063 0.937 22 C -0.271 4.271 23 N -0.585 5.585 24 Si 0.945 3.055 25 H -0.197 1.197 26 H -0.214 1.214 27 H -0.218 1.218 28 C 0.034 3.966 29 C -0.158 4.158 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.252 0.748 34 H 0.271 0.729 35 H 0.166 0.834 36 H 0.174 0.826 37 H 0.167 0.833 38 H 0.156 0.844 39 H 0.140 0.860 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.103 0.897 43 H 0.068 0.932 44 H 0.028 0.972 45 H 0.064 0.936 46 H 0.019 0.981 47 H 0.053 0.947 48 H 0.083 0.917 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.836 10.250 -25.199 27.217 hybrid contribution 0.504 1.099 -0.125 1.215 sum 1.340 11.349 -25.323 27.783 Atomic orbital electron populations 1.22211 0.94022 1.02713 1.02876 1.21133 0.95038 0.96744 0.81952 0.88624 1.46051 1.63654 1.15272 1.08760 1.19830 0.79331 0.86764 0.84645 1.90758 1.49931 1.15546 1.84997 1.20333 0.78947 0.86855 0.84846 1.90783 1.47948 1.15749 1.85045 1.43031 1.58242 1.18284 1.08420 1.18005 0.97942 0.93193 0.88655 1.21239 0.97692 1.01306 0.95804 1.21374 0.98646 0.95060 0.96972 1.21568 0.98842 0.94596 1.00014 1.21342 0.97077 1.01025 0.93633 1.21412 1.01969 0.94133 0.98945 1.21205 1.00040 0.94749 0.93623 1.21920 1.01149 0.98835 0.93318 1.21081 0.95890 0.84568 0.96945 1.44303 1.67595 1.06743 1.15456 1.20187 1.15610 1.00414 1.12106 0.93716 1.27384 1.00030 0.99072 1.00598 1.70842 1.05452 1.40225 1.42025 0.82785 0.73462 0.74624 0.74644 1.19680 1.21358 1.21784 1.20836 0.94967 0.94400 0.86393 1.22087 1.01016 0.95541 0.97203 0.92313 0.92221 0.90095 0.74754 0.72904 0.83381 0.82587 0.83318 0.84355 0.85981 0.91398 0.91402 0.89672 0.93170 0.97198 0.93603 0.98080 0.94697 0.91664 0.91568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.69 8.78 71.98 0.63 -3.06 16 2 C 0.15 3.72 2.40 44.99 0.11 3.83 16 3 H 0.10 2.27 7.58 -2.39 -0.02 2.25 16 4 N -0.68 -16.30 4.99 -443.95 -2.22 -18.51 16 5 C 0.51 12.34 7.85 87.24 0.68 13.02 16 6 O -0.53 -13.99 16.15 -3.27 -0.05 -14.04 16 7 C 0.51 11.88 7.74 87.24 0.68 12.56 16 8 O -0.52 -14.50 13.80 -3.33 -0.05 -14.55 16 9 N -0.63 -11.82 5.32 -304.85 -1.62 -13.44 16 10 C 0.12 2.18 6.32 38.21 0.24 2.42 16 11 C -0.14 -1.92 9.97 22.40 0.22 -1.69 16 12 C -0.10 -1.14 10.04 22.25 0.22 -0.92 16 13 C -0.13 -1.61 10.04 22.30 0.22 -1.38 16 14 C -0.11 -1.82 10.04 22.25 0.22 -1.60 16 15 C -0.14 -3.02 8.72 22.40 0.20 -2.83 16 16 C -0.08 -2.21 2.14 -10.76 -0.02 -2.23 16 17 C -0.11 -3.42 4.96 30.67 0.15 -3.27 16 18 C 0.14 5.69 6.51 86.36 0.56 6.26 16 19 N -0.62 -30.48 2.72 -698.27 -1.90 -32.38 16 20 C -0.35 -19.71 9.42 84.03 0.79 -18.92 16 21 H 0.05 2.51 7.90 -2.91 -0.02 2.49 16 22 C -0.07 -4.23 4.78 84.86 0.41 -3.82 16 23 N -0.94 -58.08 12.73 21.65 0.28 -57.81 16 24 Si 1.12 51.26 29.96 68.60 2.06 53.31 16 25 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 26 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 27 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 28 C 0.16 7.37 4.76 86.51 0.41 7.79 16 29 C -0.12 -4.05 4.83 30.82 0.15 -3.90 16 30 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.06 1.45 6.46 -2.39 -0.02 1.43 16 32 H 0.08 1.78 6.46 -2.39 -0.02 1.76 16 33 H 0.41 9.95 6.31 -92.71 -0.59 9.36 16 34 H 0.43 6.24 8.30 -92.71 -0.77 5.47 16 35 H 0.15 1.32 8.06 -2.91 -0.02 1.30 16 36 H 0.16 0.81 8.06 -2.91 -0.02 0.78 16 37 H 0.15 1.02 8.06 -2.91 -0.02 0.99 16 38 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 39 H 0.12 2.99 6.09 -2.91 -0.02 2.97 16 40 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 41 H 0.07 2.07 6.51 -2.39 -0.02 2.06 16 42 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 43 H 0.05 2.06 7.93 -2.39 -0.02 2.04 16 44 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 45 H 0.25 15.95 6.69 -92.71 -0.62 15.33 16 46 H 0.00 0.06 7.78 -2.39 -0.02 0.04 16 47 H 0.03 1.84 6.86 -2.39 -0.02 1.82 16 48 H 0.06 2.26 6.51 -2.39 -0.02 2.24 16 49 H 0.07 1.98 6.46 -2.39 -0.02 1.96 16 Total: -1.00 -70.87 388.96 2.16 -68.71 By element: Atomic # 1 Polarization: 26.69 SS G_CDS: -0.22 Total: 26.47 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: 5.88 Total: 2.24 kcal Atomic # 7 Polarization: -116.68 SS G_CDS: -5.46 Total: -122.14 kcal Atomic # 8 Polarization: -28.49 SS G_CDS: -0.10 Total: -28.59 kcal Atomic # 14 Polarization: 51.26 SS G_CDS: 2.06 Total: 53.31 kcal Total: -70.87 2.16 -68.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486446976.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.903 kcal (2) G-P(sol) polarization free energy of solvation -70.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds