Wall clock time and date at job start Wed Apr 1 2020 02:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50702 * 109.47335 * 2 1 4 4 N 1.27946 * 119.99918 * 265.00236 * 3 2 1 5 5 Si 1.86797 * 120.00129 * 84.99578 * 3 2 1 6 6 H 1.48503 * 109.47039 * 60.00443 * 5 3 2 7 7 H 1.48499 * 109.46979 * 180.02562 * 5 3 2 8 8 H 1.48500 * 109.47342 * 300.00142 * 5 3 2 9 9 C 1.50700 * 109.47139 * 239.99799 * 2 1 3 10 10 O 1.21278 * 119.99769 * 33.84476 * 9 2 1 11 11 N 1.34775 * 120.00088 * 213.84394 * 9 2 1 12 12 C 1.47427 * 125.64927 * 174.95815 * 11 9 2 13 13 C 1.54910 * 104.82949 * 204.16137 * 12 11 9 14 14 H 1.09005 * 111.00260 * 81.06832 * 13 12 11 15 15 C 1.53006 * 111.00171 * 204.91319 * 13 12 11 16 16 N 1.46497 * 109.47158 * 287.20083 * 15 13 12 17 17 C 1.34778 * 119.99852 * 179.97438 * 16 15 13 18 18 O 1.21783 * 120.00068 * 0.02562 * 17 16 15 19 19 C 1.41516 * 120.00118 * 179.97438 * 17 16 15 20 20 C 1.35613 * 119.99996 * 188.43149 * 19 17 16 21 21 C 1.41675 * 120.00297 * 32.32766 * 20 19 17 22 22 C 1.38277 * 126.26014 * 186.81248 * 21 20 19 23 23 C 1.39791 * 107.07876 * 179.88397 * 22 21 20 24 24 C 1.35498 * 107.90764 * 0.38933 * 23 22 21 25 25 N 1.35754 * 108.91343 * 359.75869 * 24 23 22 26 26 H 0.97000 * 125.69581 * 180.02562 * 25 24 23 27 27 C 1.55151 * 101.58753 * 322.99231 * 13 12 11 28 28 H 1.08997 * 110.87119 * 277.06869 * 27 13 12 29 29 C 1.53001 * 110.72198 * 153.86593 * 27 13 12 30 30 C 1.47023 * 125.64829 * 354.99930 * 11 9 2 31 31 H 1.08999 * 109.47121 * 184.45862 * 1 2 3 32 32 H 1.09005 * 109.47362 * 304.45849 * 1 2 3 33 33 H 1.08997 * 109.47113 * 64.45816 * 1 2 3 34 34 H 1.09006 * 109.47295 * 119.99892 * 2 1 3 35 35 H 0.96997 * 120.00091 * 179.97438 * 4 3 2 36 36 H 1.08998 * 110.36334 * 323.00550 * 12 11 9 37 37 H 1.09003 * 110.36079 * 85.21564 * 12 11 9 38 38 H 1.08998 * 109.46983 * 47.20375 * 15 13 12 39 39 H 1.09000 * 109.46559 * 167.19629 * 15 13 12 40 40 H 0.97000 * 120.00559 * 359.97438 * 16 15 13 41 41 H 1.08001 * 119.99760 * 8.43188 * 19 17 16 42 42 H 1.08003 * 119.99742 * 212.33248 * 20 19 17 43 43 H 1.08000 * 126.46071 * 0.03509 * 22 21 20 44 44 H 1.07999 * 126.04371 * 180.18149 * 23 22 21 45 45 H 1.07997 * 125.54832 * 179.76110 * 24 23 22 46 46 H 1.08998 * 109.46719 * 305.02328 * 29 27 13 47 47 H 1.08994 * 109.47200 * 65.02190 * 29 27 13 48 48 H 1.08998 * 109.46904 * 185.02738 * 29 27 13 49 49 H 1.08997 * 109.88128 * 59.48778 * 30 11 9 50 50 H 1.09006 * 109.88326 * 298.32496 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3366 1.9918 -1.1038 5 14 2.2107 2.3484 1.6115 6 1 3.1660 1.6302 2.4930 7 1 2.7191 3.7172 1.3411 8 1 0.8883 2.4355 2.2816 9 6 2.0323 -0.7104 -1.2304 10 8 1.4120 -0.6351 -2.2698 11 7 3.1709 -1.4295 -1.1758 12 6 3.7188 -2.2554 -2.2672 13 6 4.6074 -3.3087 -1.5596 14 1 4.0051 -4.1294 -1.1696 15 6 5.6958 -3.8292 -2.5006 16 7 5.0931 -4.7090 -3.5050 17 6 5.8663 -5.2866 -4.4459 18 8 7.0659 -5.0774 -4.4607 19 6 5.2843 -6.1369 -5.4159 20 6 6.0758 -6.8514 -6.2537 21 6 7.3387 -7.3163 -5.8108 22 6 8.3002 -7.9365 -6.5873 23 6 9.3824 -8.2225 -5.7499 24 6 9.0702 -7.7916 -4.5038 25 7 7.8306 -7.2388 -4.5270 26 1 7.3685 -6.8531 -3.7663 27 6 5.2224 -2.4732 -0.4060 28 1 6.0886 -1.9101 -0.7534 29 6 5.6013 -3.3732 0.7719 30 6 4.0719 -1.5208 -0.0176 31 1 -0.3633 -1.0245 0.0799 32 1 -0.3634 0.5815 0.8474 33 1 -0.3633 0.4431 -0.9272 34 1 1.8934 -0.5138 0.8900 35 1 2.6596 2.9064 -1.1039 36 1 2.9127 -2.7447 -2.8139 37 1 4.3173 -1.6436 -2.9421 38 1 6.1792 -2.9880 -2.9974 39 1 6.4362 -4.3864 -1.9267 40 1 4.1377 -4.8759 -3.4931 41 1 4.2097 -6.2167 -5.4888 42 1 5.7435 -7.0660 -7.2587 43 1 8.2295 -8.1562 -7.6423 44 1 10.3030 -8.7049 -6.0435 45 1 9.7044 -7.8743 -3.6335 46 1 4.7300 -3.9487 1.0843 47 1 6.3965 -4.0538 0.4680 48 1 5.9472 -2.7580 1.6026 49 1 3.5328 -1.9215 0.8408 50 1 4.4711 -0.5348 0.2202 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490286305.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:00 Heat of formation + Delta-G solvation = 31.980203 kcal Electronic energy + Delta-G solvation = -30413.112527 eV Core-core repulsion = 26329.308252 eV Total energy + Delta-G solvation = -4083.804275 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.192 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.18588 -41.45605 -40.48998 -39.24851 -36.95384 -36.00301 -34.65072 -33.96074 -33.20757 -31.75480 -31.61219 -29.31037 -27.67927 -27.40345 -25.72302 -24.54277 -23.12765 -22.13419 -21.74237 -21.45248 -21.18219 -20.58813 -19.66597 -19.00109 -18.67915 -17.68150 -17.44680 -17.12396 -16.57254 -16.33585 -16.17172 -15.41127 -15.31290 -15.16302 -15.10305 -15.03506 -14.81379 -14.65549 -14.41581 -14.35310 -14.18062 -13.85027 -13.80646 -13.71094 -13.48662 -13.28793 -13.10507 -13.08046 -12.82792 -12.80136 -12.76578 -12.42920 -12.32665 -12.13702 -12.03020 -11.86378 -11.54728 -10.99073 -10.76908 -10.67907 -10.14700 -9.90945 -9.63817 -9.62409 -8.40582 -0.43066 0.66289 0.85599 1.22909 1.55143 1.64274 1.73948 1.83590 1.96415 2.10402 2.21698 2.50893 2.63575 3.16779 3.21887 3.34074 3.47780 3.74662 3.87619 3.93688 4.02342 4.05709 4.10005 4.11202 4.14647 4.23476 4.34421 4.36590 4.45738 4.49139 4.53617 4.57556 4.62148 4.64636 4.64923 4.70575 4.76430 4.82094 4.85340 4.88024 4.97472 5.05306 5.09986 5.12076 5.22061 5.29907 5.36697 5.44868 5.46519 6.08868 6.26438 6.48383 6.51360 6.75062 6.75651 7.24433 7.30184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.078 4.078 3 C -0.007 4.007 4 N -0.611 5.611 5 Si 0.936 3.064 6 H -0.232 1.232 7 H -0.245 1.245 8 H -0.231 1.231 9 C 0.551 3.449 10 O -0.519 6.519 11 N -0.623 5.623 12 C 0.114 3.886 13 C -0.112 4.112 14 H 0.095 0.905 15 C 0.132 3.868 16 N -0.730 5.730 17 C 0.547 3.453 18 O -0.553 6.553 19 C -0.306 4.306 20 C 0.063 3.937 21 C -0.005 4.005 22 C -0.136 4.136 23 C -0.217 4.217 24 C 0.026 3.974 25 N -0.511 5.511 26 H 0.417 0.583 27 C -0.094 4.094 28 H 0.091 0.909 29 C -0.145 4.145 30 C 0.102 3.898 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.105 0.895 35 H 0.341 0.659 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.402 0.598 41 H 0.136 0.864 42 H 0.148 0.852 43 H 0.143 0.857 44 H 0.139 0.861 45 H 0.165 0.835 46 H 0.061 0.939 47 H 0.063 0.937 48 H 0.063 0.937 49 H 0.074 0.926 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.548 -1.956 6.794 7.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.100 4.100 3 C -0.256 4.256 4 N -0.224 5.224 5 Si 0.750 3.250 6 H -0.155 1.155 7 H -0.168 1.168 8 H -0.153 1.153 9 C 0.339 3.661 10 O -0.393 6.393 11 N -0.359 5.359 12 C -0.009 4.009 13 C -0.131 4.131 14 H 0.113 0.887 15 C 0.008 3.992 16 N -0.381 5.381 17 C 0.341 3.659 18 O -0.435 6.435 19 C -0.327 4.327 20 C 0.042 3.958 21 C -0.116 4.116 22 C -0.162 4.162 23 C -0.241 4.241 24 C -0.112 4.112 25 N -0.107 5.107 26 H 0.259 0.741 27 C -0.114 4.114 28 H 0.109 0.891 29 C -0.202 4.202 30 C -0.021 4.021 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.123 0.877 35 H 0.159 0.841 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.237 0.763 41 H 0.153 0.847 42 H 0.165 0.835 43 H 0.160 0.840 44 H 0.157 0.843 45 H 0.183 0.817 46 H 0.080 0.920 47 H 0.082 0.918 48 H 0.082 0.918 49 H 0.093 0.907 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.179 -1.420 6.132 6.297 hybrid contribution -0.438 0.768 0.624 1.082 sum -0.617 -0.651 6.756 6.815 Atomic orbital electron populations 1.21638 0.90505 1.03297 1.03791 1.20646 0.99007 0.92769 0.97565 1.30103 0.94254 0.98452 1.02829 1.68236 1.06919 1.16093 1.31145 0.85734 0.83432 0.79749 0.76097 1.15474 1.16765 1.15301 1.19848 0.78899 0.77457 0.89913 1.90708 1.56763 1.60279 1.31528 1.48425 1.23358 1.48721 1.15381 1.22243 0.97091 0.91595 0.89968 1.22732 0.96709 0.97938 0.95738 0.88654 1.21249 0.94806 0.94069 0.89092 1.46016 1.11848 1.49676 1.30609 1.17210 0.86592 0.81508 0.80593 1.90882 1.14534 1.64289 1.73800 1.21751 1.00980 1.06718 1.03300 1.20881 0.89390 0.88444 0.97066 1.18245 0.97715 1.10130 0.85481 1.21574 0.93367 1.02184 0.99064 1.20880 1.00841 1.09325 0.93007 1.22155 0.87341 1.01638 1.00077 1.42603 1.14282 1.43899 1.09910 0.74105 1.22192 0.97633 0.96026 0.95515 0.89053 1.21795 1.02047 0.99337 0.97024 1.22175 0.90785 0.99949 0.89228 0.91308 0.91201 0.90561 0.87732 0.84140 0.90350 0.91215 0.90950 0.90888 0.76339 0.84653 0.83465 0.83958 0.84279 0.81739 0.92043 0.91793 0.91760 0.90748 0.91244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.06 8.88 37.16 0.33 0.39 16 2 C -0.08 0.02 2.26 -92.92 -0.21 -0.19 16 3 C -0.01 0.00 4.83 -13.90 -0.07 -0.07 16 4 N -0.61 -1.19 12.91 56.23 0.73 -0.47 16 5 Si 0.94 -2.19 29.21 -169.99 -4.97 -7.15 16 6 H -0.23 0.63 7.11 56.52 0.40 1.03 16 7 H -0.24 0.33 7.11 56.52 0.40 0.73 16 8 H -0.23 0.48 7.11 56.52 0.40 0.88 16 9 C 0.55 1.54 6.15 -10.99 -0.07 1.47 16 10 O -0.52 -3.66 16.45 5.56 0.09 -3.57 16 11 N -0.62 -0.27 3.33 -170.52 -0.57 -0.84 16 12 C 0.11 -0.02 6.30 -2.53 -0.02 -0.04 16 13 C -0.11 0.32 2.49 -88.47 -0.22 0.10 16 14 H 0.10 -0.33 8.04 -51.93 -0.42 -0.75 16 15 C 0.13 -0.21 5.14 -4.04 -0.02 -0.23 16 16 N -0.73 0.88 5.49 -63.25 -0.35 0.54 16 17 C 0.55 0.86 6.32 -15.01 -0.09 0.76 16 18 O -0.55 -2.71 12.73 5.11 0.07 -2.65 16 19 C -0.31 -0.07 9.72 -39.27 -0.38 -0.45 16 20 C 0.06 0.04 9.76 -39.21 -0.38 -0.34 16 21 C 0.00 -0.01 5.95 -83.91 -0.50 -0.51 16 22 C -0.14 -0.34 10.86 -38.99 -0.42 -0.76 16 23 C -0.22 -0.51 10.81 -39.98 -0.43 -0.94 16 24 C 0.03 0.05 11.90 -16.79 -0.20 -0.15 16 25 N -0.51 -1.33 4.51 -10.56 -0.05 -1.38 16 26 H 0.42 0.85 6.13 -40.82 -0.25 0.60 16 27 C -0.09 0.32 3.01 -88.79 -0.27 0.05 16 28 H 0.09 -0.29 8.04 -51.93 -0.42 -0.70 16 29 C -0.14 0.62 9.13 37.16 0.34 0.96 16 30 C 0.10 -0.26 5.81 -3.06 -0.02 -0.28 16 31 H 0.07 -0.07 8.14 -51.93 -0.42 -0.50 16 32 H 0.07 -0.17 7.84 -51.93 -0.41 -0.58 16 33 H 0.08 0.15 7.70 -51.93 -0.40 -0.25 16 34 H 0.10 -0.36 6.65 -51.93 -0.35 -0.71 16 35 H 0.34 0.02 8.23 -40.82 -0.34 -0.31 16 36 H 0.08 0.04 8.09 -51.93 -0.42 -0.38 16 37 H 0.07 0.08 7.91 -51.93 -0.41 -0.33 16 38 H 0.07 0.00 7.97 -51.93 -0.41 -0.41 16 39 H 0.07 -0.11 8.14 -51.93 -0.42 -0.53 16 40 H 0.40 -1.25 8.43 -40.82 -0.34 -1.59 16 41 H 0.14 -0.30 8.06 -52.49 -0.42 -0.72 16 42 H 0.15 -0.30 8.06 -52.48 -0.42 -0.73 16 43 H 0.14 0.06 8.06 -52.49 -0.42 -0.37 16 44 H 0.14 0.09 8.06 -52.49 -0.42 -0.33 16 45 H 0.17 -0.15 8.06 -52.49 -0.42 -0.58 16 46 H 0.06 -0.27 8.13 -51.93 -0.42 -0.69 16 47 H 0.06 -0.25 8.14 -51.93 -0.42 -0.68 16 48 H 0.06 -0.29 8.14 -51.93 -0.42 -0.71 16 49 H 0.07 -0.30 7.31 -51.93 -0.38 -0.68 16 50 H 0.07 -0.20 8.14 -51.93 -0.42 -0.62 16 LS Contribution 406.73 15.07 6.13 6.13 Total: 0.00 -9.99 406.73 -9.54 -19.53 By element: Atomic # 1 Polarization: -1.91 SS G_CDS: -7.99 Total: -9.90 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: -2.63 Total: -0.23 kcal Atomic # 7 Polarization: -1.92 SS G_CDS: -0.24 Total: -2.15 kcal Atomic # 8 Polarization: -6.38 SS G_CDS: 0.16 Total: -6.22 kcal Atomic # 14 Polarization: -2.19 SS G_CDS: -4.97 Total: -7.15 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -9.99 -9.54 -19.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490286305.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.508 kcal (2) G-P(sol) polarization free energy of solvation -9.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds