Wall clock time and date at job start Wed Apr 1 2020 02:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50702 * 109.47335 * 2 1 4 4 N 1.27946 * 119.99918 * 265.00236 * 3 2 1 5 5 Si 1.86797 * 120.00129 * 84.99578 * 3 2 1 6 6 H 1.48503 * 109.47039 * 60.00443 * 5 3 2 7 7 H 1.48499 * 109.46979 * 180.02562 * 5 3 2 8 8 H 1.48500 * 109.47342 * 300.00142 * 5 3 2 9 9 C 1.50700 * 109.47139 * 239.99799 * 2 1 3 10 10 O 1.21278 * 119.99769 * 33.84476 * 9 2 1 11 11 N 1.34775 * 120.00088 * 213.84394 * 9 2 1 12 12 C 1.47427 * 125.64927 * 174.95815 * 11 9 2 13 13 C 1.54910 * 104.82949 * 204.16137 * 12 11 9 14 14 H 1.09005 * 111.00260 * 81.06832 * 13 12 11 15 15 C 1.53006 * 111.00171 * 204.91319 * 13 12 11 16 16 N 1.46497 * 109.47158 * 287.20083 * 15 13 12 17 17 C 1.34778 * 119.99852 * 179.97438 * 16 15 13 18 18 O 1.21783 * 120.00068 * 0.02562 * 17 16 15 19 19 C 1.41516 * 120.00118 * 179.97438 * 17 16 15 20 20 C 1.35613 * 119.99996 * 188.43149 * 19 17 16 21 21 C 1.41675 * 120.00297 * 32.32766 * 20 19 17 22 22 C 1.38277 * 126.26014 * 186.81248 * 21 20 19 23 23 C 1.39791 * 107.07876 * 179.88397 * 22 21 20 24 24 C 1.35498 * 107.90764 * 0.38933 * 23 22 21 25 25 N 1.35754 * 108.91343 * 359.75869 * 24 23 22 26 26 H 0.97000 * 125.69581 * 180.02562 * 25 24 23 27 27 C 1.55151 * 101.58753 * 322.99231 * 13 12 11 28 28 H 1.08997 * 110.87119 * 277.06869 * 27 13 12 29 29 C 1.53001 * 110.72198 * 153.86593 * 27 13 12 30 30 C 1.47023 * 125.64829 * 354.99930 * 11 9 2 31 31 H 1.08999 * 109.47121 * 184.45862 * 1 2 3 32 32 H 1.09005 * 109.47362 * 304.45849 * 1 2 3 33 33 H 1.08997 * 109.47113 * 64.45816 * 1 2 3 34 34 H 1.09006 * 109.47295 * 119.99892 * 2 1 3 35 35 H 0.96997 * 120.00091 * 179.97438 * 4 3 2 36 36 H 1.08998 * 110.36334 * 323.00550 * 12 11 9 37 37 H 1.09003 * 110.36079 * 85.21564 * 12 11 9 38 38 H 1.08998 * 109.46983 * 47.20375 * 15 13 12 39 39 H 1.09000 * 109.46559 * 167.19629 * 15 13 12 40 40 H 0.97000 * 120.00559 * 359.97438 * 16 15 13 41 41 H 1.08001 * 119.99760 * 8.43188 * 19 17 16 42 42 H 1.08003 * 119.99742 * 212.33248 * 20 19 17 43 43 H 1.08000 * 126.46071 * 0.03509 * 22 21 20 44 44 H 1.07999 * 126.04371 * 180.18149 * 23 22 21 45 45 H 1.07997 * 125.54832 * 179.76110 * 24 23 22 46 46 H 1.08998 * 109.46719 * 305.02328 * 29 27 13 47 47 H 1.08994 * 109.47200 * 65.02190 * 29 27 13 48 48 H 1.08998 * 109.46904 * 185.02738 * 29 27 13 49 49 H 1.08997 * 109.88128 * 59.48778 * 30 11 9 50 50 H 1.09006 * 109.88326 * 298.32496 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3366 1.9918 -1.1038 5 14 2.2107 2.3484 1.6115 6 1 3.1660 1.6302 2.4930 7 1 2.7191 3.7172 1.3411 8 1 0.8883 2.4355 2.2816 9 6 2.0323 -0.7104 -1.2304 10 8 1.4120 -0.6351 -2.2698 11 7 3.1709 -1.4295 -1.1758 12 6 3.7188 -2.2554 -2.2672 13 6 4.6074 -3.3087 -1.5596 14 1 4.0051 -4.1294 -1.1696 15 6 5.6958 -3.8292 -2.5006 16 7 5.0931 -4.7090 -3.5050 17 6 5.8663 -5.2866 -4.4459 18 8 7.0659 -5.0774 -4.4607 19 6 5.2843 -6.1369 -5.4159 20 6 6.0758 -6.8514 -6.2537 21 6 7.3387 -7.3163 -5.8108 22 6 8.3002 -7.9365 -6.5873 23 6 9.3824 -8.2225 -5.7499 24 6 9.0702 -7.7916 -4.5038 25 7 7.8306 -7.2388 -4.5270 26 1 7.3685 -6.8531 -3.7663 27 6 5.2224 -2.4732 -0.4060 28 1 6.0886 -1.9101 -0.7534 29 6 5.6013 -3.3732 0.7719 30 6 4.0719 -1.5208 -0.0176 31 1 -0.3633 -1.0245 0.0799 32 1 -0.3634 0.5815 0.8474 33 1 -0.3633 0.4431 -0.9272 34 1 1.8934 -0.5138 0.8900 35 1 2.6596 2.9064 -1.1039 36 1 2.9127 -2.7447 -2.8139 37 1 4.3173 -1.6436 -2.9421 38 1 6.1792 -2.9880 -2.9974 39 1 6.4362 -4.3864 -1.9267 40 1 4.1377 -4.8759 -3.4931 41 1 4.2097 -6.2167 -5.4888 42 1 5.7435 -7.0660 -7.2587 43 1 8.2295 -8.1562 -7.6423 44 1 10.3030 -8.7049 -6.0435 45 1 9.7044 -7.8743 -3.6335 46 1 4.7300 -3.9487 1.0843 47 1 6.3965 -4.0538 0.4680 48 1 5.9472 -2.7580 1.6026 49 1 3.5328 -1.9215 0.8408 50 1 4.4711 -0.5348 0.2202 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490286305.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:59 Heat of formation + Delta-G solvation = 32.710292 kcal Electronic energy + Delta-G solvation = -30413.080868 eV Core-core repulsion = 26329.308252 eV Total energy + Delta-G solvation = -4083.772616 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.192 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.27544 -41.48544 -40.59329 -39.26811 -37.01968 -36.04402 -34.71878 -33.92657 -33.18974 -31.86749 -31.54042 -29.36724 -27.65703 -27.25695 -25.70089 -24.56100 -23.09684 -22.11577 -21.75830 -21.38808 -21.28552 -20.63669 -19.68020 -19.03790 -18.68536 -17.69264 -17.50435 -17.11573 -16.62196 -16.34616 -16.19137 -15.41180 -15.32259 -15.14298 -15.09061 -15.05243 -14.85168 -14.53899 -14.36739 -14.25582 -14.21412 -13.84704 -13.79494 -13.61003 -13.45879 -13.22296 -13.15262 -13.03312 -12.88525 -12.69178 -12.60912 -12.28235 -12.25452 -11.96856 -11.84866 -11.68853 -11.47856 -11.11374 -10.92971 -10.74963 -10.18655 -9.90206 -9.76533 -9.68056 -8.49278 -0.47784 0.75226 0.99366 1.44331 1.62647 1.65417 1.74763 1.86315 1.97940 1.99221 2.23360 2.43007 2.57298 3.26357 3.36147 3.40624 3.63866 3.78281 4.02149 4.04218 4.10680 4.14945 4.16357 4.18455 4.26150 4.32097 4.40718 4.45030 4.49436 4.58960 4.61596 4.63128 4.64122 4.69686 4.74232 4.83219 4.88417 4.93797 4.98339 5.02685 5.06755 5.09866 5.18005 5.27762 5.33199 5.35604 5.37012 5.40190 5.44648 5.99513 6.15740 6.46461 6.50818 6.65451 6.83160 7.17135 7.19499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.083 4.083 3 C -0.009 4.009 4 N -0.659 5.659 5 Si 0.985 3.015 6 H -0.214 1.214 7 H -0.265 1.265 8 H -0.228 1.228 9 C 0.542 3.458 10 O -0.576 6.576 11 N -0.623 5.623 12 C 0.110 3.890 13 C -0.093 4.093 14 H 0.111 0.889 15 C 0.136 3.864 16 N -0.718 5.718 17 C 0.540 3.460 18 O -0.591 6.591 19 C -0.304 4.304 20 C 0.052 3.948 21 C -0.023 4.023 22 C -0.155 4.155 23 C -0.234 4.234 24 C 0.014 3.986 25 N -0.516 5.516 26 H 0.417 0.583 27 C -0.089 4.089 28 H 0.087 0.913 29 C -0.140 4.140 30 C 0.094 3.906 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.043 0.957 34 H 0.144 0.856 35 H 0.345 0.655 36 H 0.067 0.933 37 H 0.049 0.951 38 H 0.053 0.947 39 H 0.077 0.923 40 H 0.413 0.587 41 H 0.161 0.839 42 H 0.173 0.827 43 H 0.157 0.843 44 H 0.151 0.849 45 H 0.188 0.812 46 H 0.068 0.932 47 H 0.061 0.939 48 H 0.071 0.929 49 H 0.100 0.900 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.790 -2.531 9.294 9.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.105 4.105 3 C -0.256 4.256 4 N -0.272 5.272 5 Si 0.797 3.203 6 H -0.136 1.136 7 H -0.189 1.189 8 H -0.151 1.151 9 C 0.331 3.669 10 O -0.454 6.454 11 N -0.357 5.357 12 C -0.013 4.013 13 C -0.112 4.112 14 H 0.129 0.871 15 C 0.012 3.988 16 N -0.369 5.369 17 C 0.335 3.665 18 O -0.476 6.476 19 C -0.326 4.326 20 C 0.032 3.968 21 C -0.134 4.134 22 C -0.181 4.181 23 C -0.258 4.258 24 C -0.124 4.124 25 N -0.111 5.111 26 H 0.259 0.741 27 C -0.108 4.108 28 H 0.105 0.895 29 C -0.198 4.198 30 C -0.027 4.027 31 H 0.093 0.907 32 H 0.113 0.887 33 H 0.062 0.938 34 H 0.162 0.838 35 H 0.163 0.837 36 H 0.086 0.914 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.096 0.904 40 H 0.249 0.751 41 H 0.179 0.821 42 H 0.190 0.810 43 H 0.175 0.825 44 H 0.168 0.832 45 H 0.205 0.795 46 H 0.087 0.913 47 H 0.080 0.920 48 H 0.090 0.910 49 H 0.119 0.881 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.422 -2.021 8.664 8.907 hybrid contribution -0.366 0.975 -0.182 1.058 sum -0.788 -1.046 8.483 8.583 Atomic orbital electron populations 1.21636 0.90518 1.03861 1.03102 1.20902 0.99115 0.92946 0.97501 1.30743 0.92413 0.98401 1.04010 1.68301 1.09018 1.16882 1.33026 0.85076 0.83586 0.77950 0.73669 1.13594 1.18921 1.15086 1.20490 0.78957 0.77167 0.90236 1.90671 1.58631 1.62381 1.33730 1.48549 1.23042 1.47734 1.16369 1.22234 0.96885 0.92001 0.90164 1.22601 0.95824 0.97500 0.95274 0.87103 1.21211 0.95239 0.93363 0.88986 1.45953 1.12272 1.48802 1.29879 1.17506 0.86241 0.81747 0.81022 1.90863 1.16147 1.65718 1.74848 1.21991 1.02214 1.05942 1.02449 1.21241 0.88723 0.88588 0.98260 1.18682 0.98622 1.10420 0.85691 1.21897 0.93597 1.02596 0.99977 1.21177 1.01438 1.09804 0.93389 1.22610 0.87496 1.01387 1.00930 1.42685 1.14551 1.43884 1.10019 0.74099 1.22178 0.97177 0.95880 0.95613 0.89501 1.21772 1.02313 0.99152 0.96528 1.22456 0.90713 1.00764 0.88813 0.90681 0.88728 0.93802 0.83806 0.83723 0.91429 0.93240 0.92877 0.90440 0.75076 0.82138 0.80967 0.82548 0.83170 0.79539 0.91290 0.91971 0.90979 0.88146 0.90634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.12 8.88 71.98 0.64 0.76 16 2 C -0.08 0.08 2.26 -12.29 -0.03 0.06 16 3 C -0.01 0.01 4.83 88.68 0.43 0.43 16 4 N -0.66 -3.57 12.91 24.11 0.31 -3.26 16 5 Si 0.98 -6.31 29.21 68.60 2.00 -4.31 16 6 H -0.21 1.93 7.11 99.48 0.71 2.64 16 7 H -0.27 0.83 7.11 99.48 0.71 1.54 16 8 H -0.23 1.51 7.11 99.48 0.71 2.21 16 9 C 0.54 3.59 6.15 87.66 0.54 4.13 16 10 O -0.58 -9.71 16.45 -3.02 -0.05 -9.76 16 11 N -0.62 -0.77 3.33 -811.78 -2.70 -3.47 16 12 C 0.11 0.09 6.30 86.85 0.55 0.64 16 13 C -0.09 0.55 2.49 -9.40 -0.02 0.53 16 14 H 0.11 -0.93 8.04 -2.38 -0.02 -0.95 16 15 C 0.14 -0.37 5.14 86.38 0.44 0.08 16 16 N -0.72 1.45 5.49 -472.21 -2.59 -1.14 16 17 C 0.54 2.06 6.32 85.05 0.54 2.60 16 18 O -0.59 -6.60 12.73 -4.62 -0.06 -6.65 16 19 C -0.30 -0.13 9.72 22.47 0.22 0.09 16 20 C 0.05 0.09 9.76 22.51 0.22 0.30 16 21 C -0.02 -0.15 5.95 39.08 0.23 0.08 16 22 C -0.16 -0.92 10.86 22.65 0.25 -0.67 16 23 C -0.23 -1.31 10.81 22.01 0.24 -1.07 16 24 C 0.01 0.07 11.90 83.45 0.99 1.06 16 25 N -0.52 -3.21 4.51 -187.34 -0.85 -4.05 16 26 H 0.42 2.15 6.13 -92.71 -0.57 1.58 16 27 C -0.09 0.69 3.01 -9.61 -0.03 0.66 16 28 H 0.09 -0.56 8.04 -2.39 -0.02 -0.58 16 29 C -0.14 1.48 9.13 71.98 0.66 2.13 16 30 C 0.09 -0.62 5.81 86.73 0.50 -0.11 16 31 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 32 H 0.09 -0.59 7.84 -2.38 -0.02 -0.61 16 33 H 0.04 0.26 7.70 -2.39 -0.02 0.25 16 34 H 0.14 -1.38 6.65 -2.38 -0.02 -1.39 16 35 H 0.35 0.67 8.23 -92.71 -0.76 -0.09 16 36 H 0.07 0.20 8.09 -2.39 -0.02 0.18 16 37 H 0.05 0.23 7.91 -2.39 -0.02 0.22 16 38 H 0.05 0.09 7.97 -2.39 -0.02 0.07 16 39 H 0.08 -0.23 8.14 -2.39 -0.02 -0.25 16 40 H 0.41 -2.60 8.43 -92.71 -0.78 -3.38 16 41 H 0.16 -0.86 8.06 -2.91 -0.02 -0.89 16 42 H 0.17 -0.79 8.06 -2.91 -0.02 -0.81 16 43 H 0.16 0.23 8.06 -2.91 -0.02 0.20 16 44 H 0.15 0.31 8.06 -2.91 -0.02 0.28 16 45 H 0.19 -0.29 8.06 -2.91 -0.02 -0.31 16 46 H 0.07 -0.78 8.13 -2.39 -0.02 -0.80 16 47 H 0.06 -0.59 8.14 -2.39 -0.02 -0.61 16 48 H 0.07 -0.82 8.14 -2.39 -0.02 -0.84 16 49 H 0.10 -1.13 7.31 -2.39 -0.02 -1.15 16 50 H 0.08 -0.54 8.14 -2.38 -0.02 -0.56 16 Total: 0.00 -27.24 406.73 2.04 -25.20 By element: Atomic # 1 Polarization: -3.86 SS G_CDS: -0.39 Total: -4.25 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: 6.36 Total: 11.70 kcal Atomic # 7 Polarization: -6.10 SS G_CDS: -5.83 Total: -11.92 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: -0.11 Total: -16.41 kcal Atomic # 14 Polarization: -6.31 SS G_CDS: 2.00 Total: -4.31 kcal Total: -27.24 2.04 -25.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490286305.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.908 kcal (2) G-P(sol) polarization free energy of solvation -27.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds