Wall clock time and date at job start Wed Apr 1 2020 03:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09008 * 109.47342 * 2 1 4 4 N 1.46489 * 109.47366 * 120.00384 * 2 1 3 5 5 C 1.36942 * 120.00401 * 274.99867 * 4 2 1 6 6 H 1.08007 * 119.99223 * 359.97438 * 5 4 2 7 7 C 1.38806 * 120.00467 * 180.02562 * 5 4 2 8 8 N 1.31622 * 119.99598 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00239 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47327 * 59.99568 * 9 7 5 11 11 H 1.48498 * 109.46897 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.46608 * 299.99881 * 9 7 5 13 13 C 1.50700 * 109.47060 * 240.00690 * 2 1 3 14 14 C 1.38235 * 120.00140 * 99.99425 * 13 2 1 15 15 C 1.38235 * 119.99948 * 180.02562 * 14 13 2 16 16 C 1.38228 * 120.00018 * 0.02562 * 15 14 13 17 17 C 1.50703 * 120.00230 * 179.97438 * 16 15 14 18 18 N 1.46501 * 109.47244 * 89.99623 * 17 16 15 19 19 C 1.34776 * 119.99900 * 179.97438 * 18 17 16 20 20 O 1.21279 * 120.00521 * 0.02562 * 19 18 17 21 21 C 1.50704 * 120.00143 * 180.02562 * 19 18 17 22 22 H 1.09008 * 109.29673 * 320.42075 * 21 19 18 23 23 C 1.52913 * 109.29893 * 79.99785 * 21 19 18 24 24 C 1.53346 * 108.67518 * 170.86030 * 23 21 19 25 25 C 1.53070 * 108.42327 * 292.47483 * 24 23 21 26 26 C 1.50177 * 109.89444 * 48.89994 * 25 24 23 27 27 O 1.21283 * 118.24537 * 162.41448 * 26 25 24 28 28 N 1.33356 * 123.50508 * 342.69838 * 26 25 24 29 29 C 1.38231 * 120.00298 * 0.24853 * 16 15 14 30 30 C 1.38232 * 119.99890 * 279.97728 * 13 2 1 31 31 H 1.09000 * 109.46919 * 299.99597 * 1 2 3 32 32 H 1.09005 * 109.47340 * 59.99419 * 1 2 3 33 33 H 1.08998 * 109.46930 * 179.97438 * 1 2 3 34 34 H 0.97005 * 120.00453 * 95.00209 * 4 2 1 35 35 H 0.97001 * 119.99590 * 179.97438 * 8 7 5 36 36 H 1.07996 * 119.99983 * 359.97438 * 14 13 2 37 37 H 1.08008 * 120.00104 * 179.97438 * 15 14 13 38 38 H 1.09005 * 109.46984 * 330.00003 * 17 16 15 39 39 H 1.08999 * 109.47261 * 210.00426 * 17 16 15 40 40 H 0.96992 * 119.99944 * 0.02562 * 18 17 16 41 41 H 1.09000 * 109.60019 * 51.10970 * 23 21 19 42 42 H 1.08996 * 109.74681 * 290.70061 * 23 21 19 43 43 H 1.09001 * 109.67916 * 172.73998 * 24 23 21 44 44 H 1.08997 * 109.67211 * 52.20291 * 24 23 21 45 45 H 1.09000 * 109.40191 * 288.76368 * 25 24 23 46 46 H 1.09005 * 109.40251 * 169.02779 * 25 24 23 47 47 H 0.96996 * 117.94612 * 181.92522 * 28 26 25 48 48 H 1.08003 * 120.00362 * 179.72377 * 29 16 15 49 49 H 1.08000 * 120.00112 * 359.97438 * 30 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1960 5 6 2.1492 -0.0076 2.3757 6 1 1.8927 1.0404 2.4241 7 6 2.6125 -0.6619 3.5089 8 7 2.9255 -1.9390 3.4496 9 14 2.7903 0.2697 5.1182 10 1 1.4676 0.8055 5.5288 11 1 3.2994 -0.6488 6.1681 12 1 3.7447 1.3929 4.9371 13 6 2.0323 -0.7103 -1.2306 14 6 2.4586 0.0197 -2.3243 15 6 2.9189 -0.6319 -3.4533 16 6 2.9524 -2.0133 -3.4886 17 6 3.4536 -2.7237 -4.7196 18 7 4.8987 -2.9358 -4.6066 19 6 5.5680 -3.5577 -5.5975 20 8 4.9741 -3.9413 -6.5829 21 6 7.0546 -3.7764 -5.4811 22 1 7.5146 -2.8947 -5.0346 23 6 7.3184 -4.9903 -4.5894 24 6 8.8098 -5.3394 -4.6639 25 6 9.1190 -5.8422 -6.0762 26 6 8.5508 -4.8934 -7.0923 27 8 8.9682 -4.9527 -8.2294 28 7 7.6156 -3.9856 -6.8097 29 6 2.5208 -2.7434 -2.3970 30 6 2.0671 -2.0917 -1.2654 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 2.2491 -1.6318 1.1525 35 1 3.2496 -2.3961 4.2414 36 1 2.4313 1.0990 -2.2972 37 1 3.2515 -0.0616 -4.3081 38 1 3.2432 -2.1168 -5.6003 39 1 2.9512 -3.6864 -4.8134 40 1 5.3737 -2.6294 -3.8184 41 1 6.7270 -5.8365 -4.9393 42 1 7.0486 -4.7565 -3.5596 43 1 9.0410 -6.1190 -3.9380 44 1 9.4055 -4.4515 -4.4519 45 1 8.6763 -6.8286 -6.2145 46 1 10.1989 -5.9098 -6.2082 47 1 7.2853 -3.4324 -7.5347 48 1 2.5428 -3.8228 -2.4263 49 1 1.7348 -2.6620 -0.4106 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501676497.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:52 Heat of formation + Delta-G solvation = -71.643516 kcal Electronic energy + Delta-G solvation = -29075.725654 eV Core-core repulsion = 25001.083657 eV Total energy + Delta-G solvation = -4074.641997 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.82697 -40.72898 -40.11530 -37.56892 -37.22850 -35.81357 -34.12186 -33.97441 -32.11668 -31.78190 -30.87093 -29.91763 -27.42839 -26.07500 -25.51563 -23.81710 -23.77181 -22.95016 -21.79149 -21.08199 -20.12610 -19.38180 -19.01957 -18.13525 -17.59304 -17.21214 -16.73345 -16.56887 -16.35436 -16.14218 -15.84022 -15.72984 -15.19494 -15.10805 -14.99585 -14.77506 -14.57998 -14.56967 -14.34613 -14.19835 -13.75898 -13.52514 -13.39567 -13.08780 -12.99151 -12.80695 -12.68979 -12.62443 -12.41162 -12.16999 -12.02987 -11.99065 -11.89333 -11.58192 -11.52861 -11.36940 -10.97543 -10.81787 -10.25209 -10.15012 -9.76176 -9.51260 -9.00234 -7.92286 -5.20233 0.32692 0.56263 1.41686 1.49326 1.50178 1.51399 1.57286 1.97673 2.38701 2.57850 2.94095 3.41952 3.52692 3.57204 3.65647 3.70391 3.85566 3.89669 4.01401 4.04663 4.07473 4.18420 4.24919 4.37730 4.51091 4.56219 4.61835 4.70789 4.77240 4.78714 4.82152 4.82539 4.95902 5.02122 5.07719 5.09052 5.14143 5.24709 5.26735 5.30974 5.43410 5.52447 5.58030 5.62910 5.65653 5.87092 6.12553 6.20820 6.30232 6.45061 7.06174 7.13175 7.36680 8.11259 8.35553 9.30907 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013809 B = 0.001999 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.105808 B =14002.484020 C =15501.016218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.198 3.802 3 H 0.054 0.946 4 N -0.733 5.733 5 C -0.239 4.239 6 H 0.076 0.924 7 C -0.074 4.074 8 N -0.968 5.968 9 Si 0.970 3.030 10 H -0.281 1.281 11 H -0.297 1.297 12 H -0.278 1.278 13 C -0.074 4.074 14 C -0.122 4.122 15 C -0.092 4.092 16 C -0.114 4.114 17 C 0.172 3.828 18 N -0.705 5.705 19 C 0.504 3.496 20 O -0.575 6.575 21 C 0.128 3.872 22 H 0.133 0.867 23 C -0.129 4.129 24 C -0.114 4.114 25 C -0.134 4.134 26 C 0.518 3.482 27 O -0.609 6.609 28 N -0.700 5.700 29 C -0.096 4.096 30 C -0.124 4.124 31 H 0.041 0.959 32 H 0.068 0.932 33 H 0.040 0.960 34 H 0.375 0.625 35 H 0.250 0.750 36 H 0.136 0.864 37 H 0.147 0.853 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.417 0.583 41 H 0.068 0.932 42 H 0.117 0.883 43 H 0.105 0.895 44 H 0.087 0.913 45 H 0.108 0.892 46 H 0.112 0.888 47 H 0.397 0.603 48 H 0.134 0.866 49 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.242 -3.154 -16.873 19.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.090 3.910 3 H 0.072 0.928 4 N -0.375 5.375 5 C -0.371 4.371 6 H 0.093 0.907 7 C -0.266 4.266 8 N -0.619 5.619 9 Si 0.799 3.201 10 H -0.207 1.207 11 H -0.223 1.223 12 H -0.204 1.204 13 C -0.075 4.075 14 C -0.141 4.141 15 C -0.110 4.110 16 C -0.115 4.115 17 C 0.049 3.951 18 N -0.357 5.357 19 C 0.290 3.710 20 O -0.455 6.455 21 C 0.020 3.980 22 H 0.150 0.850 23 C -0.167 4.167 24 C -0.151 4.151 25 C -0.174 4.174 26 C 0.307 3.693 27 O -0.492 6.492 28 N -0.350 5.350 29 C -0.114 4.114 30 C -0.142 4.142 31 H 0.060 0.940 32 H 0.087 0.913 33 H 0.059 0.941 34 H 0.209 0.791 35 H 0.059 0.941 36 H 0.153 0.847 37 H 0.165 0.835 38 H 0.097 0.903 39 H 0.090 0.910 40 H 0.254 0.746 41 H 0.087 0.913 42 H 0.135 0.865 43 H 0.124 0.876 44 H 0.106 0.894 45 H 0.126 0.874 46 H 0.130 0.870 47 H 0.232 0.768 48 H 0.152 0.848 49 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 8.101 -3.445 -17.821 19.877 hybrid contribution -0.267 0.334 1.213 1.286 sum 7.834 -3.111 -16.608 18.624 Atomic orbital electron populations 1.22272 0.97051 1.00849 1.00818 1.19413 0.92862 0.94756 0.83928 0.92784 1.42692 1.78461 1.10456 1.05842 1.19579 1.34971 0.94262 0.88264 0.90656 1.25493 1.03005 0.96894 1.01248 1.69798 1.52542 1.10087 1.29447 0.85270 0.77871 0.77371 0.79596 1.20681 1.22340 1.20400 1.20313 0.97355 0.94289 0.95503 1.21184 0.99466 1.00600 0.92812 1.21212 0.98120 0.93660 0.98043 1.19709 1.02682 0.93849 0.95257 1.20076 0.80187 0.99933 0.94925 1.45993 1.08858 1.58832 1.22050 1.21172 0.90350 0.76989 0.82519 1.90750 1.70587 1.51634 1.32482 1.21143 0.89178 1.03203 0.84513 0.84955 1.21951 0.98567 0.95489 1.00692 1.21675 0.94549 1.03776 0.95136 1.21750 1.03635 0.98350 0.93639 1.20914 0.78297 0.80525 0.89566 1.90745 1.61840 1.71877 1.24713 1.45346 1.39894 1.38247 1.11485 1.21129 0.97759 1.00341 0.92196 1.20973 1.00740 0.94360 0.98164 0.93978 0.91299 0.94114 0.79132 0.94077 0.84651 0.83534 0.90280 0.90957 0.74603 0.91305 0.86482 0.87636 0.89412 0.87372 0.87015 0.76756 0.84838 0.87896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.11 9.47 71.98 0.68 -4.42 16 2 C 0.20 7.41 3.09 44.25 0.14 7.55 16 3 H 0.05 2.01 7.94 -2.38 -0.02 1.99 16 4 N -0.73 -35.21 5.07 -326.51 -1.66 -36.87 16 5 C -0.24 -12.74 9.93 84.03 0.83 -11.91 16 6 H 0.08 3.85 7.83 -2.91 -0.02 3.83 16 7 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 8 N -0.97 -57.17 13.06 21.65 0.28 -56.89 16 9 Si 0.97 44.67 29.55 68.60 2.03 46.69 16 10 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 11 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 12 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 13 C -0.07 -2.29 4.95 -19.87 -0.10 -2.38 16 14 C -0.12 -2.96 9.67 22.27 0.22 -2.75 16 15 C -0.09 -1.76 9.70 22.27 0.22 -1.54 16 16 C -0.11 -2.17 5.25 -19.87 -0.10 -2.27 16 17 C 0.17 2.77 5.80 85.63 0.50 3.26 16 18 N -0.71 -9.21 5.55 -466.77 -2.59 -11.80 16 19 C 0.50 8.13 6.97 87.66 0.61 8.74 16 20 O -0.58 -14.64 16.41 -3.03 -0.05 -14.69 16 21 C 0.13 1.36 3.45 44.36 0.15 1.52 16 22 H 0.13 0.64 8.14 -2.38 -0.02 0.62 16 23 C -0.13 -0.95 5.29 30.68 0.16 -0.79 16 24 C -0.11 -0.62 6.03 30.73 0.19 -0.43 16 25 C -0.13 -1.45 6.03 29.71 0.18 -1.27 16 26 C 0.52 10.19 7.71 87.71 0.68 10.86 16 27 O -0.61 -18.06 17.78 -3.04 -0.05 -18.11 16 28 N -0.70 -11.66 4.78 -450.27 -2.15 -13.81 16 29 C -0.10 -2.22 9.70 22.27 0.22 -2.01 16 30 C -0.12 -3.78 9.06 22.27 0.20 -3.58 16 31 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 33 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.38 19.24 6.06 -92.70 -0.56 18.68 16 35 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 36 H 0.14 2.84 8.04 -2.91 -0.02 2.82 16 37 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 38 H 0.08 1.28 8.09 -2.38 -0.02 1.26 16 39 H 0.07 1.27 8.08 -2.39 -0.02 1.25 16 40 H 0.42 3.85 8.46 -92.71 -0.78 3.06 16 41 H 0.07 0.72 8.10 -2.39 -0.02 0.70 16 42 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 43 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 44 H 0.09 0.33 8.13 -2.39 -0.02 0.31 16 45 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 46 H 0.11 1.04 8.14 -2.38 -0.02 1.02 16 47 H 0.40 7.59 8.47 -92.71 -0.79 6.80 16 48 H 0.13 2.65 8.06 -2.91 -0.02 2.63 16 49 H 0.10 3.62 6.91 -2.91 -0.02 3.60 16 Total: -1.00 -76.34 406.82 -0.11 -76.45 By element: Atomic # 1 Polarization: 35.26 SS G_CDS: -1.15 Total: 34.11 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: 5.23 Total: -5.07 kcal Atomic # 7 Polarization: -113.26 SS G_CDS: -6.12 Total: -119.37 kcal Atomic # 8 Polarization: -32.70 SS G_CDS: -0.10 Total: -32.81 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Total: -76.34 -0.11 -76.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501676497.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.802 kcal (2) G-P(sol) polarization free energy of solvation -76.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds