Wall clock time and date at job start Wed Apr 1 2020 03:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47505 * 2 1 4 4 N 1.46503 * 109.46764 * 240.00058 * 2 1 3 5 5 C 1.36939 * 120.00195 * 85.00364 * 4 2 1 6 6 H 1.08007 * 119.99765 * 359.97438 * 5 4 2 7 7 C 1.38805 * 120.00185 * 179.97438 * 5 4 2 8 8 N 1.31625 * 120.00152 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 120.00006 * 359.97438 * 7 5 4 10 10 H 1.48491 * 109.47382 * 90.00216 * 9 7 5 11 11 H 1.48506 * 109.46887 * 210.00100 * 9 7 5 12 12 H 1.48502 * 109.47374 * 329.99716 * 9 7 5 13 13 C 1.50698 * 109.47043 * 120.00516 * 2 1 3 14 14 C 1.38235 * 119.99640 * 259.99540 * 13 2 1 15 15 C 1.38235 * 119.99948 * 180.02562 * 14 13 2 16 16 C 1.38228 * 120.00018 * 0.02562 * 15 14 13 17 17 C 1.50703 * 120.00230 * 179.97438 * 16 15 14 18 18 N 1.46501 * 109.47244 * 89.99623 * 17 16 15 19 19 C 1.34776 * 119.99900 * 179.97438 * 18 17 16 20 20 O 1.21279 * 120.00521 * 0.02562 * 19 18 17 21 21 C 1.50704 * 120.00143 * 180.02562 * 19 18 17 22 22 H 1.09008 * 109.29673 * 320.42075 * 21 19 18 23 23 C 1.52913 * 109.29893 * 79.99785 * 21 19 18 24 24 C 1.53346 * 108.67518 * 170.86030 * 23 21 19 25 25 C 1.53070 * 108.42327 * 292.47483 * 24 23 21 26 26 C 1.50177 * 109.89444 * 48.89994 * 25 24 23 27 27 O 1.21283 * 118.24537 * 162.41448 * 26 25 24 28 28 N 1.33356 * 123.50508 * 342.69838 * 26 25 24 29 29 C 1.38231 * 120.00298 * 0.24853 * 16 15 14 30 30 C 1.38228 * 120.00326 * 80.02026 * 13 2 1 31 31 H 1.09007 * 109.47212 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47033 * 299.99669 * 1 2 3 33 33 H 1.08999 * 109.47204 * 59.99939 * 1 2 3 34 34 H 0.97002 * 120.00322 * 264.99644 * 4 2 1 35 35 H 0.96996 * 120.00011 * 179.97438 * 8 7 5 36 36 H 1.07996 * 119.99983 * 0.02562 * 14 13 2 37 37 H 1.08008 * 120.00104 * 179.97438 * 15 14 13 38 38 H 1.09005 * 109.46984 * 330.00003 * 17 16 15 39 39 H 1.08999 * 109.47261 * 210.00426 * 17 16 15 40 40 H 0.96992 * 119.99944 * 0.02562 * 18 17 16 41 41 H 1.09000 * 109.60019 * 51.10970 * 23 21 19 42 42 H 1.08996 * 109.74681 * 290.70061 * 23 21 19 43 43 H 1.09001 * 109.67916 * 172.73998 * 24 23 21 44 44 H 1.08997 * 109.67211 * 52.20291 * 24 23 21 45 45 H 1.09000 * 109.40191 * 288.76368 * 25 24 23 46 46 H 1.09005 * 109.40251 * 169.02779 * 25 24 23 47 47 H 0.96996 * 117.94612 * 181.92522 * 28 26 25 48 48 H 1.08003 * 120.00362 * 179.72377 * 29 16 15 49 49 H 1.07995 * 120.00429 * 0.02562 * 30 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0182 -0.6906 -1.1962 5 6 2.1491 -0.0075 -2.3758 6 1 1.8919 1.0404 -2.4244 7 6 2.6122 -0.6617 -3.5091 8 7 2.7374 -0.0052 -4.6430 9 14 3.0576 -2.4739 -3.4249 10 1 1.8611 -3.2931 -3.7442 11 1 4.1333 -2.7652 -4.4065 12 1 3.5330 -2.8038 -2.0572 13 6 2.0323 -0.7105 1.2304 14 6 2.4587 0.0193 2.3242 15 6 2.9200 -0.6324 3.4527 16 6 2.9553 -2.0138 3.4871 17 6 3.4587 -2.7243 4.7171 18 7 2.3397 -2.9744 5.6290 19 6 2.5537 -3.6031 6.8017 20 8 3.6726 -3.9614 7.1025 21 6 1.4025 -3.8610 7.7395 22 1 0.7393 -2.9959 7.7421 23 6 0.6279 -5.0902 7.2628 24 6 -0.3919 -5.4765 8.3409 25 6 0.3703 -5.9727 9.5721 26 6 1.4578 -4.9995 9.9265 27 8 1.9406 -5.0579 11.0375 28 7 1.9171 -4.0710 9.0867 29 6 2.5342 -2.7435 2.3912 30 6 2.0671 -2.0919 1.2650 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 2.2490 -1.6318 -1.1527 35 1 3.0614 -0.4623 -5.4348 36 1 2.4315 1.0986 2.2971 37 1 3.2536 -0.0622 4.3071 38 1 4.2025 -2.1033 5.2165 39 1 3.9118 -3.6729 4.4290 40 1 1.4448 -2.6882 5.3883 41 1 1.3189 -5.9173 7.1000 42 1 0.1077 -4.8599 6.3331 43 1 -1.0397 -6.2691 7.9663 44 1 -0.9920 -4.6064 8.6069 45 1 0.8113 -6.9460 9.3570 46 1 -0.3191 -6.0666 10.4113 47 1 2.6419 -3.5023 9.3901 48 1 2.5660 -3.8228 2.4165 49 1 1.7347 -2.6621 0.4102 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501676498.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:58 Heat of formation + Delta-G solvation = -43.208547 kcal Electronic energy + Delta-G solvation = -29067.724893 eV Core-core repulsion = 24994.315929 eV Total energy + Delta-G solvation = -4073.408965 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.23461 -39.92467 -39.29276 -36.81713 -36.22496 -34.84554 -33.53851 -32.48150 -31.17511 -30.91386 -30.14484 -28.88646 -26.68412 -25.22299 -23.73116 -23.38176 -22.84290 -21.71171 -21.17438 -19.90858 -19.70617 -18.42536 -18.01142 -17.57213 -16.91481 -16.15347 -15.87884 -15.79962 -15.39491 -15.25754 -14.91939 -14.63702 -14.48674 -14.32749 -14.19218 -13.98643 -13.76402 -13.42272 -13.27894 -13.04898 -12.73040 -12.61926 -12.46615 -12.28070 -12.13505 -11.74565 -11.71479 -11.63639 -11.60228 -11.17515 -10.97409 -10.78019 -10.66078 -10.42830 -10.16767 -10.12353 -9.66000 -9.59752 -9.51546 -9.07744 -8.88126 -8.55034 -7.37614 -5.84417 -3.20666 1.21374 1.44632 2.01872 2.16320 2.57269 2.96515 3.30892 3.32756 3.39529 3.79598 3.96142 3.99331 4.04707 4.16585 4.37282 4.47899 4.51752 4.58348 4.75661 4.79855 4.98950 5.04738 5.06489 5.08087 5.15331 5.23762 5.25149 5.35052 5.39739 5.46468 5.49798 5.52789 5.70912 5.82790 5.91537 6.02626 6.09692 6.13052 6.25449 6.26586 6.42028 6.50057 6.52579 6.78027 6.80354 6.92759 6.99813 7.04719 7.66439 7.76735 7.90384 8.34071 9.11427 9.83785 10.02644 11.33577 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.021858 B = 0.001824 C = 0.001809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.716374 B =15349.227764 C =15472.011183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.208 3.792 3 H 0.065 0.935 4 N -0.745 5.745 5 C -0.245 4.245 6 H 0.092 0.908 7 C 0.007 3.993 8 N -0.931 5.931 9 Si 0.880 3.120 10 H -0.283 1.283 11 H -0.290 1.290 12 H -0.277 1.277 13 C -0.054 4.054 14 C -0.118 4.118 15 C -0.099 4.099 16 C -0.131 4.131 17 C 0.166 3.834 18 N -0.717 5.717 19 C 0.500 3.500 20 O -0.528 6.528 21 C 0.127 3.873 22 H 0.100 0.900 23 C -0.129 4.129 24 C -0.122 4.122 25 C -0.138 4.138 26 C 0.524 3.476 27 O -0.554 6.554 28 N -0.701 5.701 29 C -0.098 4.098 30 C -0.113 4.113 31 H 0.047 0.953 32 H 0.041 0.959 33 H 0.062 0.938 34 H 0.362 0.638 35 H 0.260 0.740 36 H 0.124 0.876 37 H 0.119 0.881 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.404 0.596 41 H 0.081 0.919 42 H 0.094 0.906 43 H 0.085 0.915 44 H 0.076 0.924 45 H 0.102 0.898 46 H 0.104 0.896 47 H 0.405 0.595 48 H 0.119 0.881 49 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.007 -8.423 25.887 28.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.099 3.901 3 H 0.083 0.917 4 N -0.389 5.389 5 C -0.375 4.375 6 H 0.110 0.890 7 C -0.189 4.189 8 N -0.578 5.578 9 Si 0.711 3.289 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.203 1.203 13 C -0.055 4.055 14 C -0.136 4.136 15 C -0.117 4.117 16 C -0.132 4.132 17 C 0.044 3.956 18 N -0.369 5.369 19 C 0.284 3.716 20 O -0.404 6.404 21 C 0.017 3.983 22 H 0.118 0.882 23 C -0.167 4.167 24 C -0.159 4.159 25 C -0.178 4.178 26 C 0.311 3.689 27 O -0.432 6.432 28 N -0.354 5.354 29 C -0.117 4.117 30 C -0.132 4.132 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.082 0.918 34 H 0.196 0.804 35 H 0.070 0.930 36 H 0.142 0.858 37 H 0.137 0.863 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.239 0.761 41 H 0.100 0.900 42 H 0.113 0.887 43 H 0.104 0.896 44 H 0.094 0.906 45 H 0.121 0.879 46 H 0.122 0.878 47 H 0.242 0.758 48 H 0.137 0.863 49 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -7.090 -8.683 26.409 28.690 hybrid contribution 0.318 -0.875 -0.452 1.035 sum -6.772 -9.559 25.957 28.478 Atomic orbital electron populations 1.22387 0.97643 1.01163 1.00743 1.19230 0.92374 0.95304 0.83158 0.91689 1.42867 1.79792 1.09475 1.06757 1.19056 1.37320 0.95760 0.85371 0.89045 1.24658 1.01217 0.97488 0.95568 1.69693 1.52315 1.35571 1.00262 0.86612 0.78261 0.86898 0.77177 1.20987 1.21600 1.20267 1.20567 0.95140 0.93960 0.95825 1.21053 0.99547 1.00057 0.92974 1.20968 0.99188 0.93460 0.98108 1.19625 1.04239 0.93878 0.95419 1.20189 0.88193 1.00100 0.87164 1.46116 1.12469 1.59489 1.18850 1.20799 0.90390 0.78007 0.82424 1.90773 1.24293 1.50480 1.74834 1.20888 0.93937 1.00833 0.82608 0.88189 1.21880 0.98364 0.96532 0.99960 1.21667 0.97553 1.02591 0.94120 1.21699 0.96809 0.98950 1.00300 1.20181 0.83733 0.80741 0.84196 1.90785 1.59777 1.71241 1.21355 1.45235 1.39683 1.37238 1.13230 1.21004 0.98213 0.99476 0.92964 1.21034 0.99842 0.94472 0.97827 0.93431 0.93987 0.91845 0.80448 0.92973 0.85761 0.86251 0.90560 0.90593 0.76076 0.90014 0.88704 0.89628 0.90551 0.87942 0.87791 0.75838 0.86282 0.85931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.54 9.47 37.16 0.35 -2.19 16 2 C 0.21 3.72 3.09 -69.08 -0.21 3.50 16 3 H 0.07 1.19 7.94 -51.93 -0.41 0.78 16 4 N -0.75 -16.69 4.87 -54.55 -0.27 -16.95 16 5 C -0.25 -6.64 10.41 -15.06 -0.16 -6.80 16 6 H 0.09 2.64 8.06 -52.48 -0.42 2.22 16 7 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 8 N -0.93 -28.53 13.97 55.49 0.78 -27.76 16 9 Si 0.88 21.45 27.73 -169.99 -4.71 16.73 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 12 H -0.28 -6.33 6.52 56.52 0.37 -5.97 16 13 C -0.05 -0.80 4.95 -104.63 -0.52 -1.32 16 14 C -0.12 -1.46 9.67 -39.58 -0.38 -1.85 16 15 C -0.10 -1.03 9.70 -39.59 -0.38 -1.41 16 16 C -0.13 -1.31 5.25 -104.63 -0.55 -1.86 16 17 C 0.17 1.44 5.80 -5.19 -0.03 1.41 16 18 N -0.72 -4.76 5.55 -61.47 -0.34 -5.10 16 19 C 0.50 3.99 6.97 -10.98 -0.08 3.91 16 20 O -0.53 -6.58 16.41 5.56 0.09 -6.49 16 21 C 0.13 0.66 3.45 -69.54 -0.24 0.42 16 22 H 0.10 0.28 8.14 -51.92 -0.42 -0.14 16 23 C -0.13 -0.47 5.29 -26.60 -0.14 -0.61 16 24 C -0.12 -0.35 6.03 -26.52 -0.16 -0.51 16 25 C -0.14 -0.71 6.03 -28.10 -0.17 -0.88 16 26 C 0.52 4.77 7.71 -11.87 -0.09 4.68 16 27 O -0.55 -7.54 17.78 5.55 0.10 -7.44 16 28 N -0.70 -5.46 4.78 -56.00 -0.27 -5.73 16 29 C -0.10 -1.11 9.70 -39.58 -0.38 -1.50 16 30 C -0.11 -1.60 9.06 -39.58 -0.36 -1.96 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.36 7.96 3.93 -40.82 -0.16 7.80 16 35 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 36 H 0.12 1.38 8.04 -52.49 -0.42 0.96 16 37 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 38 H 0.08 0.70 8.09 -51.93 -0.42 0.28 16 39 H 0.08 0.72 8.08 -51.93 -0.42 0.30 16 40 H 0.40 1.81 8.46 -40.82 -0.35 1.46 16 41 H 0.08 0.41 8.10 -51.93 -0.42 -0.01 16 42 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 43 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 44 H 0.08 0.17 8.13 -51.93 -0.42 -0.25 16 45 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 47 H 0.40 3.54 8.47 -40.82 -0.35 3.20 16 48 H 0.12 1.15 8.06 -52.48 -0.42 0.72 16 49 H 0.12 1.83 6.91 -52.49 -0.36 1.46 16 LS Contribution 403.70 15.07 6.08 6.08 Total: -1.00 -35.67 403.70 -9.69 -45.36 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -7.55 Total: 8.13 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: -3.60 Total: -6.85 kcal Atomic # 7 Polarization: -55.44 SS G_CDS: -0.10 Total: -55.54 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: 0.19 Total: -13.93 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.71 Total: 16.73 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.67 -9.69 -45.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501676498.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.152 kcal (2) G-P(sol) polarization free energy of solvation -35.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds