Wall clock time and date at job start Wed Apr 1 2020 03:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47505 * 2 1 4 4 N 1.46503 * 109.46764 * 240.00058 * 2 1 3 5 5 C 1.36939 * 120.00195 * 85.00364 * 4 2 1 6 6 H 1.08007 * 119.99765 * 359.97438 * 5 4 2 7 7 C 1.38805 * 120.00185 * 179.97438 * 5 4 2 8 8 N 1.31625 * 120.00152 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 120.00006 * 359.97438 * 7 5 4 10 10 H 1.48491 * 109.47382 * 90.00216 * 9 7 5 11 11 H 1.48506 * 109.46887 * 210.00100 * 9 7 5 12 12 H 1.48502 * 109.47374 * 329.99716 * 9 7 5 13 13 C 1.50698 * 109.47043 * 120.00516 * 2 1 3 14 14 C 1.38235 * 119.99640 * 259.99540 * 13 2 1 15 15 C 1.38235 * 119.99948 * 180.02562 * 14 13 2 16 16 C 1.38228 * 120.00018 * 0.02562 * 15 14 13 17 17 C 1.50703 * 120.00230 * 179.97438 * 16 15 14 18 18 N 1.46501 * 109.47244 * 89.99623 * 17 16 15 19 19 C 1.34776 * 119.99900 * 179.97438 * 18 17 16 20 20 O 1.21279 * 120.00521 * 0.02562 * 19 18 17 21 21 C 1.50704 * 120.00143 * 180.02562 * 19 18 17 22 22 H 1.09008 * 109.29673 * 320.42075 * 21 19 18 23 23 C 1.52913 * 109.29893 * 79.99785 * 21 19 18 24 24 C 1.53346 * 108.67518 * 170.86030 * 23 21 19 25 25 C 1.53070 * 108.42327 * 292.47483 * 24 23 21 26 26 C 1.50177 * 109.89444 * 48.89994 * 25 24 23 27 27 O 1.21283 * 118.24537 * 162.41448 * 26 25 24 28 28 N 1.33356 * 123.50508 * 342.69838 * 26 25 24 29 29 C 1.38231 * 120.00298 * 0.24853 * 16 15 14 30 30 C 1.38228 * 120.00326 * 80.02026 * 13 2 1 31 31 H 1.09007 * 109.47212 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47033 * 299.99669 * 1 2 3 33 33 H 1.08999 * 109.47204 * 59.99939 * 1 2 3 34 34 H 0.97002 * 120.00322 * 264.99644 * 4 2 1 35 35 H 0.96996 * 120.00011 * 179.97438 * 8 7 5 36 36 H 1.07996 * 119.99983 * 0.02562 * 14 13 2 37 37 H 1.08008 * 120.00104 * 179.97438 * 15 14 13 38 38 H 1.09005 * 109.46984 * 330.00003 * 17 16 15 39 39 H 1.08999 * 109.47261 * 210.00426 * 17 16 15 40 40 H 0.96992 * 119.99944 * 0.02562 * 18 17 16 41 41 H 1.09000 * 109.60019 * 51.10970 * 23 21 19 42 42 H 1.08996 * 109.74681 * 290.70061 * 23 21 19 43 43 H 1.09001 * 109.67916 * 172.73998 * 24 23 21 44 44 H 1.08997 * 109.67211 * 52.20291 * 24 23 21 45 45 H 1.09000 * 109.40191 * 288.76368 * 25 24 23 46 46 H 1.09005 * 109.40251 * 169.02779 * 25 24 23 47 47 H 0.96996 * 117.94612 * 181.92522 * 28 26 25 48 48 H 1.08003 * 120.00362 * 179.72377 * 29 16 15 49 49 H 1.07995 * 120.00429 * 0.02562 * 30 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0182 -0.6906 -1.1962 5 6 2.1491 -0.0075 -2.3758 6 1 1.8919 1.0404 -2.4244 7 6 2.6122 -0.6617 -3.5091 8 7 2.7374 -0.0052 -4.6430 9 14 3.0576 -2.4739 -3.4249 10 1 1.8611 -3.2931 -3.7442 11 1 4.1333 -2.7652 -4.4065 12 1 3.5330 -2.8038 -2.0572 13 6 2.0323 -0.7105 1.2304 14 6 2.4587 0.0193 2.3242 15 6 2.9200 -0.6324 3.4527 16 6 2.9553 -2.0138 3.4871 17 6 3.4587 -2.7243 4.7171 18 7 2.3397 -2.9744 5.6290 19 6 2.5537 -3.6031 6.8017 20 8 3.6726 -3.9614 7.1025 21 6 1.4025 -3.8610 7.7395 22 1 0.7393 -2.9959 7.7421 23 6 0.6279 -5.0902 7.2628 24 6 -0.3919 -5.4765 8.3409 25 6 0.3703 -5.9727 9.5721 26 6 1.4578 -4.9995 9.9265 27 8 1.9406 -5.0579 11.0375 28 7 1.9171 -4.0710 9.0867 29 6 2.5342 -2.7435 2.3912 30 6 2.0671 -2.0919 1.2650 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 2.2490 -1.6318 -1.1527 35 1 3.0614 -0.4623 -5.4348 36 1 2.4315 1.0986 2.2971 37 1 3.2536 -0.0622 4.3071 38 1 4.2025 -2.1033 5.2165 39 1 3.9118 -3.6729 4.4290 40 1 1.4448 -2.6882 5.3883 41 1 1.3189 -5.9173 7.1000 42 1 0.1077 -4.8599 6.3331 43 1 -1.0397 -6.2691 7.9663 44 1 -0.9920 -4.6064 8.6069 45 1 0.8113 -6.9460 9.3570 46 1 -0.3191 -6.0666 10.4113 47 1 2.6419 -3.5023 9.3901 48 1 2.5660 -3.8228 2.4165 49 1 1.7347 -2.6621 0.4102 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501676498.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:56 Heat of formation + Delta-G solvation = -69.214758 kcal Electronic energy + Delta-G solvation = -29068.852607 eV Core-core repulsion = 24994.315929 eV Total energy + Delta-G solvation = -4074.536679 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.82725 -40.76928 -40.14323 -37.66837 -37.27381 -35.85899 -34.19132 -33.96893 -32.35903 -31.82564 -31.09835 -30.17037 -27.44186 -25.99497 -25.35472 -23.84098 -23.80405 -22.87495 -21.80690 -21.17711 -20.11842 -19.93004 -19.04011 -18.13540 -17.58886 -17.17145 -16.90636 -16.55153 -16.32100 -16.24986 -15.86422 -15.76113 -15.24376 -15.15581 -14.95755 -14.72674 -14.59082 -14.51789 -14.46699 -14.21542 -14.01294 -13.77344 -13.51699 -13.12828 -13.03240 -12.82159 -12.73565 -12.62768 -12.54265 -12.09921 -12.02058 -11.93061 -11.88369 -11.71773 -11.55297 -11.37884 -11.05245 -10.81579 -10.25513 -10.15529 -9.80180 -9.57724 -9.31560 -8.02339 -5.35483 0.28320 0.52078 1.35615 1.39088 1.42134 1.46242 1.50098 1.97547 2.37965 2.47516 2.88588 3.29945 3.53176 3.57959 3.62809 3.65172 3.68753 3.86500 3.92241 3.96979 4.06078 4.15629 4.25689 4.32790 4.51739 4.53839 4.59211 4.70305 4.72949 4.78358 4.79341 4.83429 4.96084 4.97930 5.06874 5.08585 5.10398 5.22239 5.27386 5.30784 5.41576 5.54576 5.62243 5.62674 5.73993 5.82588 6.07987 6.21295 6.22271 6.46434 7.07245 7.07634 7.14241 7.83370 8.02164 9.18996 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.021858 B = 0.001824 C = 0.001809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.716374 B =15349.227764 C =15472.011183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.202 3.798 3 H 0.052 0.948 4 N -0.749 5.749 5 C -0.227 4.227 6 H 0.059 0.941 7 C -0.064 4.064 8 N -0.983 5.983 9 Si 0.949 3.051 10 H -0.276 1.276 11 H -0.298 1.298 12 H -0.253 1.253 13 C -0.075 4.075 14 C -0.121 4.121 15 C -0.090 4.090 16 C -0.113 4.113 17 C 0.171 3.829 18 N -0.702 5.702 19 C 0.502 3.498 20 O -0.578 6.578 21 C 0.128 3.872 22 H 0.136 0.864 23 C -0.128 4.128 24 C -0.113 4.113 25 C -0.135 4.135 26 C 0.517 3.483 27 O -0.611 6.611 28 N -0.701 5.701 29 C -0.094 4.094 30 C -0.129 4.129 31 H 0.051 0.949 32 H 0.073 0.927 33 H 0.036 0.964 34 H 0.365 0.635 35 H 0.257 0.743 36 H 0.134 0.866 37 H 0.145 0.855 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.419 0.581 41 H 0.066 0.934 42 H 0.122 0.878 43 H 0.107 0.893 44 H 0.089 0.911 45 H 0.107 0.893 46 H 0.111 0.889 47 H 0.396 0.604 48 H 0.138 0.862 49 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.375 -9.873 27.989 31.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.094 3.906 3 H 0.070 0.930 4 N -0.394 5.394 5 C -0.358 4.358 6 H 0.077 0.923 7 C -0.256 4.256 8 N -0.634 5.634 9 Si 0.776 3.224 10 H -0.202 1.202 11 H -0.225 1.225 12 H -0.177 1.177 13 C -0.076 4.076 14 C -0.139 4.139 15 C -0.109 4.109 16 C -0.114 4.114 17 C 0.048 3.952 18 N -0.355 5.355 19 C 0.288 3.712 20 O -0.457 6.457 21 C 0.020 3.980 22 H 0.153 0.847 23 C -0.166 4.166 24 C -0.150 4.150 25 C -0.175 4.175 26 C 0.306 3.694 27 O -0.493 6.493 28 N -0.351 5.351 29 C -0.112 4.112 30 C -0.148 4.148 31 H 0.070 0.930 32 H 0.092 0.908 33 H 0.056 0.944 34 H 0.200 0.800 35 H 0.066 0.934 36 H 0.152 0.848 37 H 0.163 0.837 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.257 0.743 41 H 0.085 0.915 42 H 0.140 0.860 43 H 0.125 0.875 44 H 0.107 0.893 45 H 0.125 0.875 46 H 0.129 0.871 47 H 0.231 0.769 48 H 0.156 0.844 49 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -8.529 -10.115 28.530 31.448 hybrid contribution 0.740 -0.310 -1.002 1.284 sum -7.789 -10.425 27.528 30.449 Atomic orbital electron populations 1.22226 0.96086 1.01538 1.01007 1.19387 0.93404 0.94701 0.83062 0.92973 1.42882 1.80028 1.09670 1.06770 1.19027 1.34994 0.94592 0.87146 0.92296 1.25460 1.02466 1.02402 0.95256 1.69877 1.54721 1.37637 1.01140 0.85502 0.77813 0.81106 0.77978 1.20172 1.22496 1.17750 1.20261 0.97585 0.94405 0.95308 1.21178 0.99256 1.00626 0.92855 1.21216 0.97862 0.93743 0.98059 1.19719 1.02548 0.93785 0.95339 1.20050 0.88699 0.99678 0.86812 1.45921 1.12716 1.58752 1.18066 1.21241 0.90327 0.76982 0.82639 1.90765 1.26465 1.52595 1.75870 1.21174 0.93133 1.03201 0.80465 0.84652 1.21961 0.98178 0.95072 1.01398 1.21677 0.97167 1.03770 0.92419 1.21759 0.95850 0.97916 1.01945 1.20951 0.84075 0.80910 0.83467 1.90751 1.61901 1.72834 1.23831 1.45376 1.39104 1.36470 1.14171 1.21158 0.97332 1.00517 0.92216 1.21009 1.01082 0.94103 0.98568 0.92950 0.90795 0.94434 0.80042 0.93437 0.84840 0.83682 0.90702 0.91075 0.74337 0.91536 0.85959 0.87503 0.89252 0.87509 0.87088 0.76852 0.84378 0.87176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.62 9.47 71.98 0.68 -3.94 16 2 C 0.20 7.10 3.09 44.24 0.14 7.24 16 3 H 0.05 1.94 7.94 -2.39 -0.02 1.92 16 4 N -0.75 -33.46 4.87 -326.51 -1.59 -35.05 16 5 C -0.23 -12.57 10.41 84.03 0.87 -11.70 16 6 H 0.06 3.58 8.06 -2.91 -0.02 3.55 16 7 C -0.06 -3.74 5.50 84.86 0.47 -3.28 16 8 N -0.98 -62.32 13.97 21.65 0.30 -62.02 16 9 Si 0.95 44.61 27.73 68.60 1.90 46.51 16 10 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 11 H -0.30 -14.34 7.11 99.48 0.71 -13.64 16 12 H -0.25 -10.73 6.52 99.48 0.65 -10.09 16 13 C -0.07 -2.08 4.95 -19.87 -0.10 -2.18 16 14 C -0.12 -2.67 9.67 22.27 0.22 -2.45 16 15 C -0.09 -1.53 9.70 22.27 0.22 -1.32 16 16 C -0.11 -1.84 5.25 -19.87 -0.10 -1.94 16 17 C 0.17 2.39 5.80 85.63 0.50 2.89 16 18 N -0.70 -6.68 5.55 -466.77 -2.59 -9.27 16 19 C 0.50 6.70 6.97 87.66 0.61 7.32 16 20 O -0.58 -13.72 16.41 -3.03 -0.05 -13.77 16 21 C 0.13 0.95 3.45 44.36 0.15 1.10 16 22 H 0.14 0.12 8.14 -2.38 -0.02 0.10 16 23 C -0.13 -0.45 5.29 30.68 0.16 -0.29 16 24 C -0.11 -0.20 6.03 30.73 0.19 -0.02 16 25 C -0.14 -1.13 6.03 29.71 0.18 -0.95 16 26 C 0.52 9.10 7.71 87.71 0.68 9.77 16 27 O -0.61 -17.14 17.78 -3.04 -0.05 -17.19 16 28 N -0.70 -10.09 4.78 -450.27 -2.15 -12.25 16 29 C -0.09 -1.81 9.70 22.27 0.22 -1.59 16 30 C -0.13 -3.34 9.06 22.27 0.20 -3.14 16 31 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 32 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.37 15.68 3.93 -92.71 -0.36 15.32 16 35 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 36 H 0.13 2.64 8.04 -2.91 -0.02 2.62 16 37 H 0.15 1.76 8.06 -2.91 -0.02 1.73 16 38 H 0.07 1.14 8.09 -2.38 -0.02 1.12 16 39 H 0.07 1.13 8.08 -2.39 -0.02 1.11 16 40 H 0.42 1.72 8.46 -92.71 -0.78 0.94 16 41 H 0.07 0.48 8.10 -2.39 -0.02 0.46 16 42 H 0.12 -0.19 8.14 -2.39 -0.02 -0.21 16 43 H 0.11 -0.16 8.14 -2.39 -0.02 -0.18 16 44 H 0.09 -0.01 8.13 -2.39 -0.02 -0.03 16 45 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 46 H 0.11 0.78 8.14 -2.38 -0.02 0.76 16 47 H 0.40 6.86 8.47 -92.71 -0.79 6.07 16 48 H 0.14 2.13 8.06 -2.91 -0.02 2.10 16 49 H 0.11 3.08 6.91 -2.91 -0.02 3.06 16 Total: -1.00 -82.43 403.70 0.03 -82.40 By element: Atomic # 1 Polarization: 26.12 SS G_CDS: -1.01 Total: 25.11 kcal Atomic # 6 Polarization: -9.74 SS G_CDS: 5.27 Total: -4.47 kcal Atomic # 7 Polarization: -112.55 SS G_CDS: -6.03 Total: -118.58 kcal Atomic # 8 Polarization: -30.86 SS G_CDS: -0.10 Total: -30.96 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.90 Total: 46.51 kcal Total: -82.43 0.03 -82.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501676498.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.181 kcal (2) G-P(sol) polarization free energy of solvation -82.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds