Wall clock time and date at job start Wed Apr 1 2020 04:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47219 * 2 1 4 4 C 1.52996 * 109.47413 * 239.99428 * 2 1 3 5 5 C 1.52997 * 109.47131 * 174.99889 * 4 2 1 6 6 C 1.53006 * 109.47127 * 180.02562 * 5 4 2 7 7 N 1.46496 * 109.46995 * 180.02562 * 6 5 4 8 8 C 1.36937 * 119.99946 * 180.02562 * 7 6 5 9 9 H 1.08005 * 120.00046 * 0.02562 * 8 7 6 10 10 C 1.38814 * 120.00249 * 179.97438 * 8 7 6 11 11 N 1.31618 * 119.99665 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 120.00093 * 180.02562 * 10 8 7 13 13 H 1.48493 * 109.47290 * 60.00009 * 12 10 8 14 14 H 1.48496 * 109.47109 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47327 * 300.00253 * 12 10 8 16 16 N 1.46502 * 109.46680 * 119.99620 * 2 1 3 17 17 C 1.34781 * 120.00059 * 274.99983 * 16 2 1 18 18 O 1.21277 * 119.99934 * 0.02562 * 17 16 2 19 19 C 1.50699 * 119.99755 * 180.02562 * 17 16 2 20 20 C 1.53001 * 109.46705 * 179.97438 * 19 17 16 21 21 C 1.50703 * 109.47030 * 179.97438 * 20 19 17 22 22 N 1.29907 * 124.85580 * 89.69869 * 21 20 19 23 23 C 1.36056 * 108.80009 * 179.89642 * 22 21 20 24 24 C 1.39588 * 133.80403 * 180.09989 * 23 22 21 25 25 C 1.37682 * 119.73113 * 180.26377 * 24 23 22 26 26 C 1.38727 * 120.41807 * 0.04017 * 25 24 23 27 27 C 1.37901 * 120.47739 * 359.95646 * 26 25 24 28 28 C 1.38667 * 119.87747 * 0.02562 * 27 26 25 29 29 O 1.34231 * 124.85661 * 269.99830 * 21 20 19 30 30 H 1.08992 * 109.47133 * 299.99981 * 1 2 3 31 31 H 1.08998 * 109.47095 * 60.00889 * 1 2 3 32 32 H 1.09010 * 109.47120 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46993 * 54.99758 * 4 2 1 34 34 H 1.09004 * 109.47298 * 295.00173 * 4 2 1 35 35 H 1.09001 * 109.46832 * 60.00325 * 5 4 2 36 36 H 1.08993 * 109.47194 * 299.99846 * 5 4 2 37 37 H 1.09001 * 109.46801 * 300.00272 * 6 5 4 38 38 H 1.09001 * 109.46998 * 59.99868 * 6 5 4 39 39 H 0.96998 * 120.00192 * 359.97438 * 7 6 5 40 40 H 0.97001 * 119.99952 * 180.02562 * 11 10 8 41 41 H 0.96999 * 119.99931 * 95.00625 * 16 2 1 42 42 H 1.08993 * 109.47546 * 299.99667 * 19 17 16 43 43 H 1.09000 * 109.47454 * 60.00643 * 19 17 16 44 44 H 1.09002 * 109.47517 * 300.00110 * 20 19 17 45 45 H 1.09000 * 109.47237 * 59.99988 * 20 19 17 46 46 H 1.08004 * 120.13296 * 0.30408 * 24 23 22 47 47 H 1.07994 * 119.79148 * 180.02562 * 25 24 23 48 48 H 1.08002 * 119.75971 * 179.97438 * 26 25 24 49 49 H 1.08004 * 120.06325 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5649 -0.6133 -1.3135 6 6 4.0749 -1.3342 -2.5631 7 7 5.5350 -1.2313 -2.6244 8 6 6.2188 -1.8048 -3.6630 9 1 5.6816 -2.3326 -4.4372 10 6 7.6022 -1.7068 -3.7214 11 7 8.2567 -1.0631 -2.7783 12 14 8.5348 -2.4885 -5.1386 13 1 8.0786 -1.8927 -6.4200 14 1 9.9896 -2.2439 -4.9686 15 1 8.2778 -3.9511 -5.1536 16 7 2.0183 -0.6906 1.1963 17 6 2.1469 -0.0181 2.3572 18 8 1.8581 1.1585 2.4117 19 6 2.6497 -0.7284 3.5876 20 6 2.7016 0.2550 4.7586 21 6 3.2038 -0.4554 5.9892 22 7 4.4529 -0.5531 6.3323 23 6 4.5348 -1.2565 7.4940 24 6 5.5955 -1.6572 8.3082 25 6 5.3432 -2.3851 9.4493 26 6 4.0425 -2.7229 9.7937 27 6 2.9850 -2.3337 8.9988 28 6 3.2207 -1.5998 7.8461 29 8 2.4248 -1.0826 6.8845 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3634 -1.0278 0.0005 33 1 1.6054 -0.2619 -2.1369 34 1 1.7517 -1.7716 -1.2054 35 1 3.9994 -1.0728 -0.4257 36 1 3.8532 0.4369 -1.3573 37 1 3.7865 -2.3844 -2.5197 38 1 3.6403 -0.8744 -3.4506 39 1 6.0173 -0.7562 -1.9297 40 1 9.2234 -0.9943 -2.8192 41 1 2.2490 -1.6317 1.1527 42 1 1.9775 -1.5506 3.8327 43 1 3.6491 -1.1201 3.3981 44 1 3.3741 1.0770 4.5133 45 1 1.7025 0.6472 4.9483 46 1 6.6099 -1.3967 8.0444 47 1 6.1630 -2.6953 10.0801 48 1 3.8568 -3.2946 10.6910 49 1 1.9750 -2.6000 9.2735 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506950279.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:56 Heat of formation + Delta-G solvation = -8.712777 kcal Electronic energy + Delta-G solvation = -28330.331981 eV Core-core repulsion = 24258.418866 eV Total energy + Delta-G solvation = -4071.913116 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.59410 -40.05568 -38.40475 -36.93292 -35.31363 -34.84697 -33.80337 -32.58361 -31.19531 -31.05607 -29.70150 -29.29365 -26.17152 -25.56406 -23.53339 -23.06958 -22.55781 -21.83281 -21.00530 -20.75674 -20.49998 -18.44791 -17.75448 -17.38784 -17.01079 -16.96688 -16.31786 -15.86971 -15.81116 -14.72692 -14.59345 -14.56006 -14.34992 -14.27545 -13.96845 -13.65409 -13.50333 -13.36465 -12.97510 -12.91950 -12.73129 -12.69157 -12.57912 -12.20193 -12.10014 -11.91579 -11.64769 -11.56150 -11.31231 -11.16902 -10.83748 -10.80124 -10.78171 -10.48095 -10.40851 -10.03791 -9.98230 -9.67177 -9.21401 -9.15458 -8.84830 -8.83100 -6.90020 -5.74213 -3.03094 0.28525 0.81998 2.01387 2.10122 2.49718 3.01114 3.25757 3.45119 3.47566 3.49106 3.50649 4.12051 4.34236 4.45456 4.55898 4.56013 4.63097 4.73247 4.74097 4.83647 4.86947 5.01033 5.03046 5.12360 5.14874 5.40381 5.41298 5.43779 5.54613 5.57753 5.58903 5.61716 5.65227 5.77822 5.83243 5.90972 5.92310 5.94579 6.04748 6.11452 6.20655 6.22950 6.36133 6.41498 6.44908 6.87179 6.90565 7.28670 7.37375 7.70730 8.08257 8.44832 9.55392 10.14552 10.48773 11.48646 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.008894 B = 0.001918 C = 0.001626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3147.260413 B =14592.802246 C =17215.023313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.140 3.860 3 H 0.090 0.910 4 C -0.123 4.123 5 C -0.126 4.126 6 C 0.153 3.847 7 N -0.734 5.734 8 C -0.241 4.241 9 H 0.069 0.931 10 C -0.015 4.015 11 N -0.934 5.934 12 Si 0.908 3.092 13 H -0.286 1.286 14 H -0.291 1.291 15 H -0.286 1.286 16 N -0.719 5.719 17 C 0.520 3.480 18 O -0.542 6.542 19 C -0.141 4.141 20 C -0.013 4.013 21 C 0.256 3.744 22 N -0.473 5.473 23 C 0.022 3.978 24 C -0.060 4.060 25 C -0.121 4.121 26 C -0.095 4.095 27 C -0.094 4.094 28 C 0.006 3.994 29 O -0.213 6.213 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.016 0.984 38 H 0.017 0.983 39 H 0.383 0.617 40 H 0.256 0.744 41 H 0.402 0.598 42 H 0.099 0.901 43 H 0.107 0.893 44 H 0.121 0.879 45 H 0.106 0.894 46 H 0.138 0.862 47 H 0.138 0.862 48 H 0.140 0.860 49 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.210 -2.342 25.096 29.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.036 3.964 3 H 0.108 0.892 4 C -0.161 4.161 5 C -0.164 4.164 6 C 0.025 3.975 7 N -0.378 5.378 8 C -0.372 4.372 9 H 0.087 0.913 10 C -0.211 4.211 11 N -0.582 5.582 12 Si 0.739 3.261 13 H -0.213 1.213 14 H -0.217 1.217 15 H -0.213 1.213 16 N -0.371 5.371 17 C 0.306 3.694 18 O -0.419 6.419 19 C -0.182 4.182 20 C -0.052 4.052 21 C 0.044 3.956 22 N -0.202 5.202 23 C -0.089 4.089 24 C -0.079 4.079 25 C -0.140 4.140 26 C -0.113 4.113 27 C -0.112 4.112 28 C -0.045 4.045 29 O -0.105 6.105 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.034 0.966 38 H 0.035 0.965 39 H 0.217 0.783 40 H 0.065 0.935 41 H 0.237 0.763 42 H 0.118 0.882 43 H 0.126 0.874 44 H 0.140 0.860 45 H 0.125 0.875 46 H 0.155 0.845 47 H 0.156 0.844 48 H 0.158 0.842 49 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -15.868 -1.331 24.640 29.337 hybrid contribution 0.339 -1.103 -0.234 1.178 sum -15.529 -2.434 24.405 29.029 Atomic orbital electron populations 1.22170 0.95431 1.01976 1.02439 1.21067 0.93592 0.97863 0.83856 0.89218 1.21853 0.96920 1.00756 0.96612 1.21733 0.93598 1.01487 0.99534 1.20649 0.86215 0.96419 0.94219 1.42371 1.00181 1.66282 1.29006 1.19197 0.89444 1.27283 1.01283 0.91277 1.24762 0.96471 1.01242 0.98663 1.69654 1.07274 1.46939 1.34357 0.86252 0.78979 0.78938 0.81923 1.21274 1.21670 1.21293 1.46089 1.67060 1.14266 1.09648 1.20287 0.77423 0.87214 0.84474 1.90719 1.50266 1.15826 1.85120 1.21650 1.04838 0.99306 0.92419 1.19989 1.04539 0.96559 0.84094 1.26492 0.83963 0.92783 0.92363 1.70710 1.18460 1.18865 1.12187 1.19953 0.93910 1.00804 0.94266 1.20397 0.97877 0.96748 0.92865 1.21078 0.97320 0.98845 0.96777 1.21036 0.91738 0.99287 0.99268 1.19893 1.00869 0.99090 0.91382 1.20362 0.89635 1.01470 0.93002 1.84508 1.37854 1.57675 1.30455 0.92320 0.91526 0.92558 0.90265 0.91431 0.92040 0.91927 0.96616 0.96523 0.78320 0.93453 0.76325 0.88223 0.87448 0.86045 0.87544 0.84456 0.84449 0.84208 0.84726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 9.48 37.16 0.35 -1.15 16 2 C 0.14 1.51 2.57 -67.93 -0.17 1.34 16 3 H 0.09 1.15 7.58 -51.93 -0.39 0.76 16 4 C -0.12 -1.40 4.75 -26.73 -0.13 -1.52 16 5 C -0.13 -1.95 5.22 -26.73 -0.14 -2.09 16 6 C 0.15 3.05 6.26 -4.04 -0.03 3.02 16 7 N -0.73 -19.04 5.60 -59.91 -0.34 -19.37 16 8 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 9 H 0.07 1.91 7.83 -52.48 -0.41 1.49 16 10 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 11 N -0.93 -28.79 13.06 55.49 0.72 -28.06 16 12 Si 0.91 22.70 29.55 -169.99 -5.02 17.67 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 14 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 15 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 16 N -0.72 -7.10 4.53 -53.81 -0.24 -7.35 16 17 C 0.52 5.64 7.79 -10.98 -0.09 5.56 16 18 O -0.54 -7.69 15.64 5.56 0.09 -7.60 16 19 C -0.14 -1.17 5.68 -27.88 -0.16 -1.33 16 20 C -0.01 -0.12 5.13 -27.88 -0.14 -0.26 16 21 C 0.26 2.80 7.49 -13.09 -0.10 2.70 16 22 N -0.47 -6.08 11.34 -8.70 -0.10 -6.18 16 23 C 0.02 0.26 7.24 -84.71 -0.61 -0.35 16 24 C -0.06 -0.55 10.10 -39.28 -0.40 -0.94 16 25 C -0.12 -0.79 10.02 -39.60 -0.40 -1.18 16 26 C -0.10 -0.57 10.03 -39.52 -0.40 -0.96 16 27 C -0.09 -0.72 10.06 -39.55 -0.40 -1.12 16 28 C 0.01 0.06 7.43 -38.64 -0.29 -0.23 16 29 O -0.21 -2.36 10.77 3.61 0.04 -2.32 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.47 8.14 -51.92 -0.42 0.04 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.96 7.75 -51.93 -0.40 0.56 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 38 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.38 10.47 7.67 -40.82 -0.31 10.16 16 40 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 41 H 0.40 3.23 8.60 -40.82 -0.35 2.88 16 42 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.12 1.16 8.10 -51.93 -0.42 0.74 16 45 H 0.11 0.85 8.10 -51.93 -0.42 0.43 16 46 H 0.14 1.08 8.06 -52.48 -0.42 0.66 16 47 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 48 H 0.14 0.40 8.06 -52.49 -0.42 -0.02 16 49 H 0.13 0.73 8.06 -52.48 -0.42 0.31 16 LS Contribution 414.15 15.07 6.24 6.24 Total: -1.00 -35.96 414.15 -9.71 -45.67 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -7.77 Total: 7.42 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: -3.33 Total: -6.11 kcal Atomic # 7 Polarization: -61.01 SS G_CDS: 0.05 Total: -60.96 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.13 Total: -9.93 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -35.96 -9.71 -45.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506950279.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.960 kcal (2) G-P(sol) polarization free energy of solvation -35.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds