Wall clock time and date at job start Wed Apr 1 2020 04:13:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.08997 * 109.47219 * 2 1
4 4 C 1.52996 * 109.47413 * 239.99428 * 2 1 3
5 5 C 1.52997 * 109.47131 * 174.99889 * 4 2 1
6 6 C 1.53006 * 109.47127 * 180.02562 * 5 4 2
7 7 N 1.46496 * 109.46995 * 180.02562 * 6 5 4
8 8 C 1.36937 * 119.99946 * 180.02562 * 7 6 5
9 9 H 1.08005 * 120.00046 * 0.02562 * 8 7 6
10 10 C 1.38814 * 120.00249 * 179.97438 * 8 7 6
11 11 N 1.31618 * 119.99665 * 0.02562 * 10 8 7
12 12 Si 1.86796 * 120.00093 * 180.02562 * 10 8 7
13 13 H 1.48493 * 109.47290 * 60.00009 * 12 10 8
14 14 H 1.48496 * 109.47109 * 180.02562 * 12 10 8
15 15 H 1.48503 * 109.47327 * 300.00253 * 12 10 8
16 16 N 1.46502 * 109.46680 * 119.99620 * 2 1 3
17 17 C 1.34781 * 120.00059 * 274.99983 * 16 2 1
18 18 O 1.21277 * 119.99934 * 0.02562 * 17 16 2
19 19 C 1.50699 * 119.99755 * 180.02562 * 17 16 2
20 20 C 1.53001 * 109.46705 * 179.97438 * 19 17 16
21 21 C 1.50703 * 109.47030 * 179.97438 * 20 19 17
22 22 N 1.29907 * 124.85580 * 89.69869 * 21 20 19
23 23 C 1.36056 * 108.80009 * 179.89642 * 22 21 20
24 24 C 1.39588 * 133.80403 * 180.09989 * 23 22 21
25 25 C 1.37682 * 119.73113 * 180.26377 * 24 23 22
26 26 C 1.38727 * 120.41807 * 0.04017 * 25 24 23
27 27 C 1.37901 * 120.47739 * 359.95646 * 26 25 24
28 28 C 1.38667 * 119.87747 * 0.02562 * 27 26 25
29 29 O 1.34231 * 124.85661 * 269.99830 * 21 20 19
30 30 H 1.08992 * 109.47133 * 299.99981 * 1 2 3
31 31 H 1.08998 * 109.47095 * 60.00889 * 1 2 3
32 32 H 1.09010 * 109.47120 * 180.02562 * 1 2 3
33 33 H 1.09001 * 109.46993 * 54.99758 * 4 2 1
34 34 H 1.09004 * 109.47298 * 295.00173 * 4 2 1
35 35 H 1.09001 * 109.46832 * 60.00325 * 5 4 2
36 36 H 1.08993 * 109.47194 * 299.99846 * 5 4 2
37 37 H 1.09001 * 109.46801 * 300.00272 * 6 5 4
38 38 H 1.09001 * 109.46998 * 59.99868 * 6 5 4
39 39 H 0.96998 * 120.00192 * 359.97438 * 7 6 5
40 40 H 0.97001 * 119.99952 * 180.02562 * 11 10 8
41 41 H 0.96999 * 119.99931 * 95.00625 * 16 2 1
42 42 H 1.08993 * 109.47546 * 299.99667 * 19 17 16
43 43 H 1.09000 * 109.47454 * 60.00643 * 19 17 16
44 44 H 1.09002 * 109.47517 * 300.00110 * 20 19 17
45 45 H 1.09000 * 109.47237 * 59.99988 * 20 19 17
46 46 H 1.08004 * 120.13296 * 0.30408 * 24 23 22
47 47 H 1.07994 * 119.79148 * 180.02562 * 25 24 23
48 48 H 1.08002 * 119.75971 * 179.97438 * 26 25 24
49 49 H 1.08004 * 120.06325 * 180.02562 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0401 -0.7213 -1.2491
5 6 3.5649 -0.6133 -1.3135
6 6 4.0749 -1.3342 -2.5631
7 7 5.5350 -1.2313 -2.6244
8 6 6.2188 -1.8048 -3.6630
9 1 5.6816 -2.3326 -4.4372
10 6 7.6022 -1.7068 -3.7214
11 7 8.2567 -1.0631 -2.7783
12 14 8.5348 -2.4885 -5.1386
13 1 8.0786 -1.8927 -6.4200
14 1 9.9896 -2.2439 -4.9686
15 1 8.2778 -3.9511 -5.1536
16 7 2.0183 -0.6906 1.1963
17 6 2.1469 -0.0181 2.3572
18 8 1.8581 1.1585 2.4117
19 6 2.6497 -0.7284 3.5876
20 6 2.7016 0.2550 4.7586
21 6 3.2038 -0.4554 5.9892
22 7 4.4529 -0.5531 6.3323
23 6 4.5348 -1.2565 7.4940
24 6 5.5955 -1.6572 8.3082
25 6 5.3432 -2.3851 9.4493
26 6 4.0425 -2.7229 9.7937
27 6 2.9850 -2.3337 8.9988
28 6 3.2207 -1.5998 7.8461
29 8 2.4248 -1.0826 6.8845
30 1 -0.3633 0.5138 0.8899
31 1 -0.3633 0.5137 -0.8900
32 1 -0.3634 -1.0278 0.0005
33 1 1.6054 -0.2619 -2.1369
34 1 1.7517 -1.7716 -1.2054
35 1 3.9994 -1.0728 -0.4257
36 1 3.8532 0.4369 -1.3573
37 1 3.7865 -2.3844 -2.5197
38 1 3.6403 -0.8744 -3.4506
39 1 6.0173 -0.7562 -1.9297
40 1 9.2234 -0.9943 -2.8192
41 1 2.2490 -1.6317 1.1527
42 1 1.9775 -1.5506 3.8327
43 1 3.6491 -1.1201 3.3981
44 1 3.3741 1.0770 4.5133
45 1 1.7025 0.6472 4.9483
46 1 6.6099 -1.3967 8.0444
47 1 6.1630 -2.6953 10.0801
48 1 3.8568 -3.2946 10.6910
49 1 1.9750 -2.6000 9.2735
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001506950279.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:13:56
Heat of formation + Delta-G solvation = -8.712777 kcal
Electronic energy + Delta-G solvation = -28330.331981 eV
Core-core repulsion = 24258.418866 eV
Total energy + Delta-G solvation = -4071.913116 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.184 amu
Computer time = 1.17 seconds
Orbital eigenvalues (eV)
-43.59410 -40.05568 -38.40475 -36.93292 -35.31363 -34.84697 -33.80337 -32.58361
-31.19531 -31.05607 -29.70150 -29.29365 -26.17152 -25.56406 -23.53339 -23.06958
-22.55781 -21.83281 -21.00530 -20.75674 -20.49998 -18.44791 -17.75448 -17.38784
-17.01079 -16.96688 -16.31786 -15.86971 -15.81116 -14.72692 -14.59345 -14.56006
-14.34992 -14.27545 -13.96845 -13.65409 -13.50333 -13.36465 -12.97510 -12.91950
-12.73129 -12.69157 -12.57912 -12.20193 -12.10014 -11.91579 -11.64769 -11.56150
-11.31231 -11.16902 -10.83748 -10.80124 -10.78171 -10.48095 -10.40851 -10.03791
-9.98230 -9.67177 -9.21401 -9.15458 -8.84830 -8.83100 -6.90020 -5.74213
-3.03094 0.28525 0.81998 2.01387 2.10122 2.49718 3.01114 3.25757
3.45119 3.47566 3.49106 3.50649 4.12051 4.34236 4.45456 4.55898
4.56013 4.63097 4.73247 4.74097 4.83647 4.86947 5.01033 5.03046
5.12360 5.14874 5.40381 5.41298 5.43779 5.54613 5.57753 5.58903
5.61716 5.65227 5.77822 5.83243 5.90972 5.92310 5.94579 6.04748
6.11452 6.20655 6.22950 6.36133 6.41498 6.44908 6.87179 6.90565
7.28670 7.37375 7.70730 8.08257 8.44832 9.55392 10.14552 10.48773
11.48646
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.008894 B = 0.001918 C = 0.001626
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3147.260413 B =14592.802246 C =17215.023313
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.162 4.162
2 C 0.140 3.860
3 H 0.090 0.910
4 C -0.123 4.123
5 C -0.126 4.126
6 C 0.153 3.847
7 N -0.734 5.734
8 C -0.241 4.241
9 H 0.069 0.931
10 C -0.015 4.015
11 N -0.934 5.934
12 Si 0.908 3.092
13 H -0.286 1.286
14 H -0.291 1.291
15 H -0.286 1.286
16 N -0.719 5.719
17 C 0.520 3.480
18 O -0.542 6.542
19 C -0.141 4.141
20 C -0.013 4.013
21 C 0.256 3.744
22 N -0.473 5.473
23 C 0.022 3.978
24 C -0.060 4.060
25 C -0.121 4.121
26 C -0.095 4.095
27 C -0.094 4.094
28 C 0.006 3.994
29 O -0.213 6.213
30 H 0.058 0.942
31 H 0.066 0.934
32 H 0.055 0.945
33 H 0.079 0.921
34 H 0.067 0.933
35 H 0.061 0.939
36 H 0.062 0.938
37 H 0.016 0.984
38 H 0.017 0.983
39 H 0.383 0.617
40 H 0.256 0.744
41 H 0.402 0.598
42 H 0.099 0.901
43 H 0.107 0.893
44 H 0.121 0.879
45 H 0.106 0.894
46 H 0.138 0.862
47 H 0.138 0.862
48 H 0.140 0.860
49 H 0.135 0.865
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.210 -2.342 25.096 29.968
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.220 4.220
2 C 0.036 3.964
3 H 0.108 0.892
4 C -0.161 4.161
5 C -0.164 4.164
6 C 0.025 3.975
7 N -0.378 5.378
8 C -0.372 4.372
9 H 0.087 0.913
10 C -0.211 4.211
11 N -0.582 5.582
12 Si 0.739 3.261
13 H -0.213 1.213
14 H -0.217 1.217
15 H -0.213 1.213
16 N -0.371 5.371
17 C 0.306 3.694
18 O -0.419 6.419
19 C -0.182 4.182
20 C -0.052 4.052
21 C 0.044 3.956
22 N -0.202 5.202
23 C -0.089 4.089
24 C -0.079 4.079
25 C -0.140 4.140
26 C -0.113 4.113
27 C -0.112 4.112
28 C -0.045 4.045
29 O -0.105 6.105
30 H 0.077 0.923
31 H 0.085 0.915
32 H 0.074 0.926
33 H 0.097 0.903
34 H 0.086 0.914
35 H 0.080 0.920
36 H 0.081 0.919
37 H 0.034 0.966
38 H 0.035 0.965
39 H 0.217 0.783
40 H 0.065 0.935
41 H 0.237 0.763
42 H 0.118 0.882
43 H 0.126 0.874
44 H 0.140 0.860
45 H 0.125 0.875
46 H 0.155 0.845
47 H 0.156 0.844
48 H 0.158 0.842
49 H 0.153 0.847
Dipole moment (debyes) X Y Z Total
from point charges -15.868 -1.331 24.640 29.337
hybrid contribution 0.339 -1.103 -0.234 1.178
sum -15.529 -2.434 24.405 29.029
Atomic orbital electron populations
1.22170 0.95431 1.01976 1.02439 1.21067 0.93592 0.97863 0.83856
0.89218 1.21853 0.96920 1.00756 0.96612 1.21733 0.93598 1.01487
0.99534 1.20649 0.86215 0.96419 0.94219 1.42371 1.00181 1.66282
1.29006 1.19197 0.89444 1.27283 1.01283 0.91277 1.24762 0.96471
1.01242 0.98663 1.69654 1.07274 1.46939 1.34357 0.86252 0.78979
0.78938 0.81923 1.21274 1.21670 1.21293 1.46089 1.67060 1.14266
1.09648 1.20287 0.77423 0.87214 0.84474 1.90719 1.50266 1.15826
1.85120 1.21650 1.04838 0.99306 0.92419 1.19989 1.04539 0.96559
0.84094 1.26492 0.83963 0.92783 0.92363 1.70710 1.18460 1.18865
1.12187 1.19953 0.93910 1.00804 0.94266 1.20397 0.97877 0.96748
0.92865 1.21078 0.97320 0.98845 0.96777 1.21036 0.91738 0.99287
0.99268 1.19893 1.00869 0.99090 0.91382 1.20362 0.89635 1.01470
0.93002 1.84508 1.37854 1.57675 1.30455 0.92320 0.91526 0.92558
0.90265 0.91431 0.92040 0.91927 0.96616 0.96523 0.78320 0.93453
0.76325 0.88223 0.87448 0.86045 0.87544 0.84456 0.84449 0.84208
0.84726
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.50 9.48 37.16 0.35 -1.15 16
2 C 0.14 1.51 2.57 -67.93 -0.17 1.34 16
3 H 0.09 1.15 7.58 -51.93 -0.39 0.76 16
4 C -0.12 -1.40 4.75 -26.73 -0.13 -1.52 16
5 C -0.13 -1.95 5.22 -26.73 -0.14 -2.09 16
6 C 0.15 3.05 6.26 -4.04 -0.03 3.02 16
7 N -0.73 -19.04 5.60 -59.91 -0.34 -19.37 16
8 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16
9 H 0.07 1.91 7.83 -52.48 -0.41 1.49 16
10 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16
11 N -0.93 -28.79 13.06 55.49 0.72 -28.06 16
12 Si 0.91 22.70 29.55 -169.99 -5.02 17.67 16
13 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16
14 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16
15 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16
16 N -0.72 -7.10 4.53 -53.81 -0.24 -7.35 16
17 C 0.52 5.64 7.79 -10.98 -0.09 5.56 16
18 O -0.54 -7.69 15.64 5.56 0.09 -7.60 16
19 C -0.14 -1.17 5.68 -27.88 -0.16 -1.33 16
20 C -0.01 -0.12 5.13 -27.88 -0.14 -0.26 16
21 C 0.26 2.80 7.49 -13.09 -0.10 2.70 16
22 N -0.47 -6.08 11.34 -8.70 -0.10 -6.18 16
23 C 0.02 0.26 7.24 -84.71 -0.61 -0.35 16
24 C -0.06 -0.55 10.10 -39.28 -0.40 -0.94 16
25 C -0.12 -0.79 10.02 -39.60 -0.40 -1.18 16
26 C -0.10 -0.57 10.03 -39.52 -0.40 -0.96 16
27 C -0.09 -0.72 10.06 -39.55 -0.40 -1.12 16
28 C 0.01 0.06 7.43 -38.64 -0.29 -0.23 16
29 O -0.21 -2.36 10.77 3.61 0.04 -2.32 16
30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16
31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16
32 H 0.06 0.47 8.14 -51.92 -0.42 0.04 16
33 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16
34 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16
35 H 0.06 0.96 7.75 -51.93 -0.40 0.56 16
36 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16
37 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16
38 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16
39 H 0.38 10.47 7.67 -40.82 -0.31 10.16 16
40 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16
41 H 0.40 3.23 8.60 -40.82 -0.35 2.88 16
42 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16
43 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16
44 H 0.12 1.16 8.10 -51.93 -0.42 0.74 16
45 H 0.11 0.85 8.10 -51.93 -0.42 0.43 16
46 H 0.14 1.08 8.06 -52.48 -0.42 0.66 16
47 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16
48 H 0.14 0.40 8.06 -52.49 -0.42 -0.02 16
49 H 0.13 0.73 8.06 -52.48 -0.42 0.31 16
LS Contribution 414.15 15.07 6.24 6.24
Total: -1.00 -35.96 414.15 -9.71 -45.67
By element:
Atomic # 1 Polarization: 15.18 SS G_CDS: -7.77 Total: 7.42 kcal
Atomic # 6 Polarization: -2.78 SS G_CDS: -3.33 Total: -6.11 kcal
Atomic # 7 Polarization: -61.01 SS G_CDS: 0.05 Total: -60.96 kcal
Atomic # 8 Polarization: -10.05 SS G_CDS: 0.13 Total: -9.93 kcal
Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.67 kcal
Total LS contribution 6.24 Total: 6.24 kcal
Total: -35.96 -9.71 -45.67 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001506950279.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 36.960 kcal
(2) G-P(sol) polarization free energy of solvation -35.963 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.997 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.710 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.673 kcal
(6) G-S(sol) free energy of system = (1) + (5) -8.713 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.17 seconds