Wall clock time and date at job start Wed Apr 1 2020 04:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47219 * 2 1 4 4 C 1.52996 * 109.47413 * 239.99428 * 2 1 3 5 5 C 1.52997 * 109.47131 * 174.99889 * 4 2 1 6 6 C 1.53006 * 109.47127 * 180.02562 * 5 4 2 7 7 N 1.46496 * 109.46995 * 180.02562 * 6 5 4 8 8 C 1.36937 * 119.99946 * 180.02562 * 7 6 5 9 9 H 1.08005 * 120.00046 * 0.02562 * 8 7 6 10 10 C 1.38814 * 120.00249 * 179.97438 * 8 7 6 11 11 N 1.31618 * 119.99665 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 120.00093 * 180.02562 * 10 8 7 13 13 H 1.48493 * 109.47290 * 60.00009 * 12 10 8 14 14 H 1.48496 * 109.47109 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47327 * 300.00253 * 12 10 8 16 16 N 1.46502 * 109.46680 * 119.99620 * 2 1 3 17 17 C 1.34781 * 120.00059 * 274.99983 * 16 2 1 18 18 O 1.21277 * 119.99934 * 0.02562 * 17 16 2 19 19 C 1.50699 * 119.99755 * 180.02562 * 17 16 2 20 20 C 1.53001 * 109.46705 * 179.97438 * 19 17 16 21 21 C 1.50703 * 109.47030 * 179.97438 * 20 19 17 22 22 N 1.29907 * 124.85580 * 89.69869 * 21 20 19 23 23 C 1.36056 * 108.80009 * 179.89642 * 22 21 20 24 24 C 1.39588 * 133.80403 * 180.09989 * 23 22 21 25 25 C 1.37682 * 119.73113 * 180.26377 * 24 23 22 26 26 C 1.38727 * 120.41807 * 0.04017 * 25 24 23 27 27 C 1.37901 * 120.47739 * 359.95646 * 26 25 24 28 28 C 1.38667 * 119.87747 * 0.02562 * 27 26 25 29 29 O 1.34231 * 124.85661 * 269.99830 * 21 20 19 30 30 H 1.08992 * 109.47133 * 299.99981 * 1 2 3 31 31 H 1.08998 * 109.47095 * 60.00889 * 1 2 3 32 32 H 1.09010 * 109.47120 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46993 * 54.99758 * 4 2 1 34 34 H 1.09004 * 109.47298 * 295.00173 * 4 2 1 35 35 H 1.09001 * 109.46832 * 60.00325 * 5 4 2 36 36 H 1.08993 * 109.47194 * 299.99846 * 5 4 2 37 37 H 1.09001 * 109.46801 * 300.00272 * 6 5 4 38 38 H 1.09001 * 109.46998 * 59.99868 * 6 5 4 39 39 H 0.96998 * 120.00192 * 359.97438 * 7 6 5 40 40 H 0.97001 * 119.99952 * 180.02562 * 11 10 8 41 41 H 0.96999 * 119.99931 * 95.00625 * 16 2 1 42 42 H 1.08993 * 109.47546 * 299.99667 * 19 17 16 43 43 H 1.09000 * 109.47454 * 60.00643 * 19 17 16 44 44 H 1.09002 * 109.47517 * 300.00110 * 20 19 17 45 45 H 1.09000 * 109.47237 * 59.99988 * 20 19 17 46 46 H 1.08004 * 120.13296 * 0.30408 * 24 23 22 47 47 H 1.07994 * 119.79148 * 180.02562 * 25 24 23 48 48 H 1.08002 * 119.75971 * 179.97438 * 26 25 24 49 49 H 1.08004 * 120.06325 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5649 -0.6133 -1.3135 6 6 4.0749 -1.3342 -2.5631 7 7 5.5350 -1.2313 -2.6244 8 6 6.2188 -1.8048 -3.6630 9 1 5.6816 -2.3326 -4.4372 10 6 7.6022 -1.7068 -3.7214 11 7 8.2567 -1.0631 -2.7783 12 14 8.5348 -2.4885 -5.1386 13 1 8.0786 -1.8927 -6.4200 14 1 9.9896 -2.2439 -4.9686 15 1 8.2778 -3.9511 -5.1536 16 7 2.0183 -0.6906 1.1963 17 6 2.1469 -0.0181 2.3572 18 8 1.8581 1.1585 2.4117 19 6 2.6497 -0.7284 3.5876 20 6 2.7016 0.2550 4.7586 21 6 3.2038 -0.4554 5.9892 22 7 4.4529 -0.5531 6.3323 23 6 4.5348 -1.2565 7.4940 24 6 5.5955 -1.6572 8.3082 25 6 5.3432 -2.3851 9.4493 26 6 4.0425 -2.7229 9.7937 27 6 2.9850 -2.3337 8.9988 28 6 3.2207 -1.5998 7.8461 29 8 2.4248 -1.0826 6.8845 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3634 -1.0278 0.0005 33 1 1.6054 -0.2619 -2.1369 34 1 1.7517 -1.7716 -1.2054 35 1 3.9994 -1.0728 -0.4257 36 1 3.8532 0.4369 -1.3573 37 1 3.7865 -2.3844 -2.5197 38 1 3.6403 -0.8744 -3.4506 39 1 6.0173 -0.7562 -1.9297 40 1 9.2234 -0.9943 -2.8192 41 1 2.2490 -1.6317 1.1527 42 1 1.9775 -1.5506 3.8327 43 1 3.6491 -1.1201 3.3981 44 1 3.3741 1.0770 4.5133 45 1 1.7025 0.6472 4.9483 46 1 6.6099 -1.3967 8.0444 47 1 6.1630 -2.6953 10.0801 48 1 3.8568 -3.2946 10.6910 49 1 1.9750 -2.6000 9.2735 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506950279.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:55 Heat of formation + Delta-G solvation = -34.109152 kcal Electronic energy + Delta-G solvation = -28331.433251 eV Core-core repulsion = 24258.418866 eV Total energy + Delta-G solvation = -4073.014385 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -44.33614 -40.95341 -39.00961 -38.03769 -36.54801 -36.06601 -34.57505 -34.15450 -32.53718 -31.66197 -30.94320 -30.18939 -27.26331 -26.78039 -24.78703 -24.18179 -23.28021 -22.70008 -22.33504 -21.76565 -21.36938 -19.13398 -19.09142 -18.52723 -18.10795 -17.78930 -17.23470 -16.67482 -16.62102 -16.44321 -15.84391 -15.44474 -15.35948 -15.18287 -15.06360 -14.90293 -14.60684 -14.45556 -14.13524 -13.75380 -13.59554 -13.46236 -13.38108 -13.18139 -13.12415 -12.98723 -12.73965 -12.56353 -12.38760 -12.37070 -12.27366 -12.25803 -12.07127 -11.85090 -11.70637 -11.53574 -11.48081 -10.93139 -10.91664 -10.04686 -9.84592 -9.50538 -9.01142 -7.96096 -5.25620 -0.37470 0.18945 1.28069 1.37779 1.46179 1.49929 1.56205 1.63120 2.21544 2.55475 2.62867 2.75601 3.37196 3.45651 3.59891 3.67243 3.83584 3.90584 3.97804 4.05274 4.12821 4.14972 4.21009 4.27755 4.31181 4.41173 4.43865 4.46001 4.60582 4.70912 4.73711 4.79414 4.84267 4.88249 4.91820 4.96005 5.02705 5.03680 5.14738 5.16468 5.31064 5.34220 5.36553 5.39239 5.43767 5.50370 5.61510 5.69814 6.26209 6.51627 6.56254 7.25239 7.31562 8.09390 8.31100 9.27431 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.008894 B = 0.001918 C = 0.001626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3147.260413 B =14592.802246 C =17215.023313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.143 3.857 3 H 0.065 0.935 4 C -0.109 4.109 5 C -0.113 4.113 6 C 0.149 3.851 7 N -0.751 5.751 8 C -0.249 4.249 9 H 0.077 0.923 10 C -0.080 4.080 11 N -0.972 5.972 12 Si 0.977 3.023 13 H -0.277 1.277 14 H -0.296 1.296 15 H -0.275 1.275 16 N -0.713 5.713 17 C 0.519 3.481 18 O -0.579 6.579 19 C -0.130 4.130 20 C -0.008 4.008 21 C 0.252 3.748 22 N -0.508 5.508 23 C -0.015 4.015 24 C -0.083 4.083 25 C -0.110 4.110 26 C -0.083 4.083 27 C -0.100 4.100 28 C -0.018 4.018 29 O -0.220 6.220 30 H 0.046 0.954 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.058 0.942 36 H 0.045 0.955 37 H 0.026 0.974 38 H 0.019 0.981 39 H 0.371 0.629 40 H 0.251 0.749 41 H 0.413 0.587 42 H 0.125 0.875 43 H 0.107 0.893 44 H 0.109 0.891 45 H 0.116 0.884 46 H 0.139 0.861 47 H 0.171 0.829 48 H 0.181 0.819 49 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.595 -4.569 25.970 31.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.038 3.962 3 H 0.083 0.917 4 C -0.148 4.148 5 C -0.151 4.151 6 C 0.023 3.977 7 N -0.393 5.393 8 C -0.380 4.380 9 H 0.095 0.905 10 C -0.272 4.272 11 N -0.622 5.622 12 Si 0.806 3.194 13 H -0.203 1.203 14 H -0.222 1.222 15 H -0.201 1.201 16 N -0.365 5.365 17 C 0.306 3.694 18 O -0.459 6.459 19 C -0.171 4.171 20 C -0.046 4.046 21 C 0.041 3.959 22 N -0.238 5.238 23 C -0.125 4.125 24 C -0.102 4.102 25 C -0.129 4.129 26 C -0.100 4.100 27 C -0.118 4.118 28 C -0.068 4.068 29 O -0.111 6.111 30 H 0.065 0.935 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.077 0.923 36 H 0.064 0.936 37 H 0.043 0.957 38 H 0.037 0.963 39 H 0.203 0.797 40 H 0.060 0.940 41 H 0.250 0.750 42 H 0.143 0.857 43 H 0.125 0.875 44 H 0.128 0.872 45 H 0.134 0.866 46 H 0.157 0.843 47 H 0.188 0.812 48 H 0.198 0.802 49 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -17.301 -3.598 25.500 31.024 hybrid contribution 0.749 -0.445 -0.412 0.963 sum -16.552 -4.043 25.088 30.327 Atomic orbital electron populations 1.22089 0.93736 1.03008 1.02372 1.20966 0.94803 0.96549 0.83844 0.91701 1.21751 0.93445 1.02259 0.97309 1.21597 0.96579 0.99661 0.97274 1.20873 0.83122 0.97422 0.96300 1.42652 1.02581 1.65954 1.28135 1.19653 0.90033 1.26550 1.01802 0.90469 1.25656 0.97582 1.02479 1.01516 1.69826 1.07105 1.48833 1.36470 0.85156 0.77001 0.78405 0.78877 1.20291 1.22184 1.20117 1.46064 1.66511 1.14775 1.09176 1.20648 0.76728 0.86778 0.85203 1.90704 1.52006 1.17479 1.85728 1.21584 1.05220 0.99416 0.90883 1.19962 1.04601 0.96253 0.83792 1.26665 0.83729 0.92817 0.92687 1.70644 1.19586 1.20064 1.13468 1.20370 0.95376 1.02080 0.94718 1.20686 0.97562 0.97990 0.93918 1.21531 0.98838 0.96873 0.95656 1.21577 0.90831 0.97914 0.99707 1.20369 1.02738 0.98348 0.90392 1.20860 0.89283 1.02631 0.93999 1.84472 1.38018 1.57925 1.30733 0.93478 0.90554 0.90906 0.89274 0.89363 0.92291 0.93629 0.95653 0.96290 0.79724 0.94001 0.75006 0.85726 0.87503 0.87237 0.86608 0.84328 0.81189 0.80200 0.82484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 9.48 71.98 0.68 -1.90 16 2 C 0.14 2.93 2.57 44.99 0.12 3.05 16 3 H 0.06 1.69 7.58 -2.39 -0.02 1.67 16 4 C -0.11 -2.28 4.75 30.59 0.15 -2.13 16 5 C -0.11 -3.45 5.22 30.60 0.16 -3.29 16 6 C 0.15 5.84 6.26 86.38 0.54 6.38 16 7 N -0.75 -39.20 5.60 -343.44 -1.92 -41.12 16 8 C -0.25 -14.19 9.99 84.03 0.84 -13.35 16 9 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 10 C -0.08 -4.72 5.50 84.86 0.47 -4.25 16 11 N -0.97 -61.00 13.06 21.65 0.28 -60.72 16 12 Si 0.98 46.72 29.55 68.60 2.03 48.75 16 13 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 14 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 15 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 16 N -0.71 -13.46 4.53 -442.53 -2.00 -15.47 16 17 C 0.52 11.28 7.79 87.66 0.68 11.96 16 18 O -0.58 -16.90 15.64 -3.02 -0.05 -16.95 16 19 C -0.13 -2.16 5.68 29.85 0.17 -1.99 16 20 C -0.01 -0.15 5.13 29.85 0.15 0.01 16 21 C 0.25 5.84 7.49 88.39 0.66 6.50 16 22 N -0.51 -13.93 11.34 -296.26 -3.36 -17.29 16 23 C -0.01 -0.36 7.24 39.32 0.28 -0.07 16 24 C -0.08 -1.51 10.10 22.46 0.23 -1.28 16 25 C -0.11 -1.19 10.02 22.26 0.22 -0.96 16 26 C -0.08 -0.73 10.03 22.31 0.22 -0.51 16 27 C -0.10 -1.36 10.06 22.29 0.22 -1.14 16 28 C -0.02 -0.39 7.43 22.88 0.17 -0.22 16 29 O -0.22 -5.00 10.77 -9.98 -0.11 -5.11 16 30 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 33 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 35 H 0.06 1.82 7.75 -2.39 -0.02 1.80 16 36 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.37 20.80 7.67 -92.71 -0.71 20.09 16 40 H 0.25 15.29 8.31 -92.71 -0.77 14.52 16 41 H 0.41 5.96 8.60 -92.71 -0.80 5.16 16 42 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 44 H 0.11 2.31 8.10 -2.39 -0.02 2.29 16 45 H 0.12 1.93 8.10 -2.39 -0.02 1.91 16 46 H 0.14 2.30 8.06 -2.91 -0.02 2.28 16 47 H 0.17 0.66 8.06 -2.91 -0.02 0.64 16 48 H 0.18 0.15 8.06 -2.91 -0.02 0.12 16 49 H 0.16 1.33 8.06 -2.91 -0.02 1.31 16 Total: -1.00 -80.21 414.15 0.29 -79.92 By element: Atomic # 1 Polarization: 31.74 SS G_CDS: -0.54 Total: 31.20 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: 5.97 Total: -3.20 kcal Atomic # 7 Polarization: -127.60 SS G_CDS: -7.00 Total: -134.60 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -0.15 Total: -22.06 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.75 kcal Total: -80.21 0.29 -79.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506950279.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.811 kcal (2) G-P(sol) polarization free energy of solvation -80.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds