Wall clock time and date at job start Wed Apr 1 2020 04:13:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.08997 * 109.47219 * 2 1
4 4 C 1.52996 * 109.47413 * 239.99428 * 2 1 3
5 5 C 1.52997 * 109.47131 * 174.99889 * 4 2 1
6 6 C 1.53006 * 109.47127 * 180.02562 * 5 4 2
7 7 N 1.46496 * 109.46995 * 180.02562 * 6 5 4
8 8 C 1.36937 * 119.99946 * 180.02562 * 7 6 5
9 9 H 1.08005 * 120.00046 * 0.02562 * 8 7 6
10 10 C 1.38814 * 120.00249 * 179.97438 * 8 7 6
11 11 N 1.31618 * 119.99665 * 0.02562 * 10 8 7
12 12 Si 1.86796 * 120.00093 * 180.02562 * 10 8 7
13 13 H 1.48493 * 109.47290 * 60.00009 * 12 10 8
14 14 H 1.48496 * 109.47109 * 180.02562 * 12 10 8
15 15 H 1.48503 * 109.47327 * 300.00253 * 12 10 8
16 16 N 1.46502 * 109.46680 * 119.99620 * 2 1 3
17 17 C 1.34781 * 120.00059 * 274.99983 * 16 2 1
18 18 O 1.21277 * 119.99934 * 0.02562 * 17 16 2
19 19 C 1.50699 * 119.99755 * 180.02562 * 17 16 2
20 20 C 1.53001 * 109.46705 * 179.97438 * 19 17 16
21 21 C 1.50703 * 109.47030 * 179.97438 * 20 19 17
22 22 N 1.29907 * 124.85580 * 89.69869 * 21 20 19
23 23 C 1.36056 * 108.80009 * 179.89642 * 22 21 20
24 24 C 1.39588 * 133.80403 * 180.09989 * 23 22 21
25 25 C 1.37682 * 119.73113 * 180.26377 * 24 23 22
26 26 C 1.38727 * 120.41807 * 0.04017 * 25 24 23
27 27 C 1.37901 * 120.47739 * 359.95646 * 26 25 24
28 28 C 1.38667 * 119.87747 * 0.02562 * 27 26 25
29 29 O 1.34231 * 124.85661 * 269.99830 * 21 20 19
30 30 H 1.08992 * 109.47133 * 299.99981 * 1 2 3
31 31 H 1.08998 * 109.47095 * 60.00889 * 1 2 3
32 32 H 1.09010 * 109.47120 * 180.02562 * 1 2 3
33 33 H 1.09001 * 109.46993 * 54.99758 * 4 2 1
34 34 H 1.09004 * 109.47298 * 295.00173 * 4 2 1
35 35 H 1.09001 * 109.46832 * 60.00325 * 5 4 2
36 36 H 1.08993 * 109.47194 * 299.99846 * 5 4 2
37 37 H 1.09001 * 109.46801 * 300.00272 * 6 5 4
38 38 H 1.09001 * 109.46998 * 59.99868 * 6 5 4
39 39 H 0.96998 * 120.00192 * 359.97438 * 7 6 5
40 40 H 0.97001 * 119.99952 * 180.02562 * 11 10 8
41 41 H 0.96999 * 119.99931 * 95.00625 * 16 2 1
42 42 H 1.08993 * 109.47546 * 299.99667 * 19 17 16
43 43 H 1.09000 * 109.47454 * 60.00643 * 19 17 16
44 44 H 1.09002 * 109.47517 * 300.00110 * 20 19 17
45 45 H 1.09000 * 109.47237 * 59.99988 * 20 19 17
46 46 H 1.08004 * 120.13296 * 0.30408 * 24 23 22
47 47 H 1.07994 * 119.79148 * 180.02562 * 25 24 23
48 48 H 1.08002 * 119.75971 * 179.97438 * 26 25 24
49 49 H 1.08004 * 120.06325 * 180.02562 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0401 -0.7213 -1.2491
5 6 3.5649 -0.6133 -1.3135
6 6 4.0749 -1.3342 -2.5631
7 7 5.5350 -1.2313 -2.6244
8 6 6.2188 -1.8048 -3.6630
9 1 5.6816 -2.3326 -4.4372
10 6 7.6022 -1.7068 -3.7214
11 7 8.2567 -1.0631 -2.7783
12 14 8.5348 -2.4885 -5.1386
13 1 8.0786 -1.8927 -6.4200
14 1 9.9896 -2.2439 -4.9686
15 1 8.2778 -3.9511 -5.1536
16 7 2.0183 -0.6906 1.1963
17 6 2.1469 -0.0181 2.3572
18 8 1.8581 1.1585 2.4117
19 6 2.6497 -0.7284 3.5876
20 6 2.7016 0.2550 4.7586
21 6 3.2038 -0.4554 5.9892
22 7 4.4529 -0.5531 6.3323
23 6 4.5348 -1.2565 7.4940
24 6 5.5955 -1.6572 8.3082
25 6 5.3432 -2.3851 9.4493
26 6 4.0425 -2.7229 9.7937
27 6 2.9850 -2.3337 8.9988
28 6 3.2207 -1.5998 7.8461
29 8 2.4248 -1.0826 6.8845
30 1 -0.3633 0.5138 0.8899
31 1 -0.3633 0.5137 -0.8900
32 1 -0.3634 -1.0278 0.0005
33 1 1.6054 -0.2619 -2.1369
34 1 1.7517 -1.7716 -1.2054
35 1 3.9994 -1.0728 -0.4257
36 1 3.8532 0.4369 -1.3573
37 1 3.7865 -2.3844 -2.5197
38 1 3.6403 -0.8744 -3.4506
39 1 6.0173 -0.7562 -1.9297
40 1 9.2234 -0.9943 -2.8192
41 1 2.2490 -1.6317 1.1527
42 1 1.9775 -1.5506 3.8327
43 1 3.6491 -1.1201 3.3981
44 1 3.3741 1.0770 4.5133
45 1 1.7025 0.6472 4.9483
46 1 6.6099 -1.3967 8.0444
47 1 6.1630 -2.6953 10.0801
48 1 3.8568 -3.2946 10.6910
49 1 1.9750 -2.6000 9.2735
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001506950279.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:13:55
Heat of formation + Delta-G solvation = -34.109152 kcal
Electronic energy + Delta-G solvation = -28331.433251 eV
Core-core repulsion = 24258.418866 eV
Total energy + Delta-G solvation = -4073.014385 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.184 amu
Computer time = 1.17 seconds
Orbital eigenvalues (eV)
-44.33614 -40.95341 -39.00961 -38.03769 -36.54801 -36.06601 -34.57505 -34.15450
-32.53718 -31.66197 -30.94320 -30.18939 -27.26331 -26.78039 -24.78703 -24.18179
-23.28021 -22.70008 -22.33504 -21.76565 -21.36938 -19.13398 -19.09142 -18.52723
-18.10795 -17.78930 -17.23470 -16.67482 -16.62102 -16.44321 -15.84391 -15.44474
-15.35948 -15.18287 -15.06360 -14.90293 -14.60684 -14.45556 -14.13524 -13.75380
-13.59554 -13.46236 -13.38108 -13.18139 -13.12415 -12.98723 -12.73965 -12.56353
-12.38760 -12.37070 -12.27366 -12.25803 -12.07127 -11.85090 -11.70637 -11.53574
-11.48081 -10.93139 -10.91664 -10.04686 -9.84592 -9.50538 -9.01142 -7.96096
-5.25620 -0.37470 0.18945 1.28069 1.37779 1.46179 1.49929 1.56205
1.63120 2.21544 2.55475 2.62867 2.75601 3.37196 3.45651 3.59891
3.67243 3.83584 3.90584 3.97804 4.05274 4.12821 4.14972 4.21009
4.27755 4.31181 4.41173 4.43865 4.46001 4.60582 4.70912 4.73711
4.79414 4.84267 4.88249 4.91820 4.96005 5.02705 5.03680 5.14738
5.16468 5.31064 5.34220 5.36553 5.39239 5.43767 5.50370 5.61510
5.69814 6.26209 6.51627 6.56254 7.25239 7.31562 8.09390 8.31100
9.27431
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.008894 B = 0.001918 C = 0.001626
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3147.260413 B =14592.802246 C =17215.023313
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.154 4.154
2 C 0.143 3.857
3 H 0.065 0.935
4 C -0.109 4.109
5 C -0.113 4.113
6 C 0.149 3.851
7 N -0.751 5.751
8 C -0.249 4.249
9 H 0.077 0.923
10 C -0.080 4.080
11 N -0.972 5.972
12 Si 0.977 3.023
13 H -0.277 1.277
14 H -0.296 1.296
15 H -0.275 1.275
16 N -0.713 5.713
17 C 0.519 3.481
18 O -0.579 6.579
19 C -0.130 4.130
20 C -0.008 4.008
21 C 0.252 3.748
22 N -0.508 5.508
23 C -0.015 4.015
24 C -0.083 4.083
25 C -0.110 4.110
26 C -0.083 4.083
27 C -0.100 4.100
28 C -0.018 4.018
29 O -0.220 6.220
30 H 0.046 0.954
31 H 0.076 0.924
32 H 0.072 0.928
33 H 0.089 0.911
34 H 0.088 0.912
35 H 0.058 0.942
36 H 0.045 0.955
37 H 0.026 0.974
38 H 0.019 0.981
39 H 0.371 0.629
40 H 0.251 0.749
41 H 0.413 0.587
42 H 0.125 0.875
43 H 0.107 0.893
44 H 0.109 0.891
45 H 0.116 0.884
46 H 0.139 0.861
47 H 0.171 0.829
48 H 0.181 0.819
49 H 0.158 0.842
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.595 -4.569 25.970 31.700
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.212 4.212
2 C 0.038 3.962
3 H 0.083 0.917
4 C -0.148 4.148
5 C -0.151 4.151
6 C 0.023 3.977
7 N -0.393 5.393
8 C -0.380 4.380
9 H 0.095 0.905
10 C -0.272 4.272
11 N -0.622 5.622
12 Si 0.806 3.194
13 H -0.203 1.203
14 H -0.222 1.222
15 H -0.201 1.201
16 N -0.365 5.365
17 C 0.306 3.694
18 O -0.459 6.459
19 C -0.171 4.171
20 C -0.046 4.046
21 C 0.041 3.959
22 N -0.238 5.238
23 C -0.125 4.125
24 C -0.102 4.102
25 C -0.129 4.129
26 C -0.100 4.100
27 C -0.118 4.118
28 C -0.068 4.068
29 O -0.111 6.111
30 H 0.065 0.935
31 H 0.094 0.906
32 H 0.091 0.909
33 H 0.107 0.893
34 H 0.106 0.894
35 H 0.077 0.923
36 H 0.064 0.936
37 H 0.043 0.957
38 H 0.037 0.963
39 H 0.203 0.797
40 H 0.060 0.940
41 H 0.250 0.750
42 H 0.143 0.857
43 H 0.125 0.875
44 H 0.128 0.872
45 H 0.134 0.866
46 H 0.157 0.843
47 H 0.188 0.812
48 H 0.198 0.802
49 H 0.175 0.825
Dipole moment (debyes) X Y Z Total
from point charges -17.301 -3.598 25.500 31.024
hybrid contribution 0.749 -0.445 -0.412 0.963
sum -16.552 -4.043 25.088 30.327
Atomic orbital electron populations
1.22089 0.93736 1.03008 1.02372 1.20966 0.94803 0.96549 0.83844
0.91701 1.21751 0.93445 1.02259 0.97309 1.21597 0.96579 0.99661
0.97274 1.20873 0.83122 0.97422 0.96300 1.42652 1.02581 1.65954
1.28135 1.19653 0.90033 1.26550 1.01802 0.90469 1.25656 0.97582
1.02479 1.01516 1.69826 1.07105 1.48833 1.36470 0.85156 0.77001
0.78405 0.78877 1.20291 1.22184 1.20117 1.46064 1.66511 1.14775
1.09176 1.20648 0.76728 0.86778 0.85203 1.90704 1.52006 1.17479
1.85728 1.21584 1.05220 0.99416 0.90883 1.19962 1.04601 0.96253
0.83792 1.26665 0.83729 0.92817 0.92687 1.70644 1.19586 1.20064
1.13468 1.20370 0.95376 1.02080 0.94718 1.20686 0.97562 0.97990
0.93918 1.21531 0.98838 0.96873 0.95656 1.21577 0.90831 0.97914
0.99707 1.20369 1.02738 0.98348 0.90392 1.20860 0.89283 1.02631
0.93999 1.84472 1.38018 1.57925 1.30733 0.93478 0.90554 0.90906
0.89274 0.89363 0.92291 0.93629 0.95653 0.96290 0.79724 0.94001
0.75006 0.85726 0.87503 0.87237 0.86608 0.84328 0.81189 0.80200
0.82484
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.58 9.48 71.98 0.68 -1.90 16
2 C 0.14 2.93 2.57 44.99 0.12 3.05 16
3 H 0.06 1.69 7.58 -2.39 -0.02 1.67 16
4 C -0.11 -2.28 4.75 30.59 0.15 -2.13 16
5 C -0.11 -3.45 5.22 30.60 0.16 -3.29 16
6 C 0.15 5.84 6.26 86.38 0.54 6.38 16
7 N -0.75 -39.20 5.60 -343.44 -1.92 -41.12 16
8 C -0.25 -14.19 9.99 84.03 0.84 -13.35 16
9 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16
10 C -0.08 -4.72 5.50 84.86 0.47 -4.25 16
11 N -0.97 -61.00 13.06 21.65 0.28 -60.72 16
12 Si 0.98 46.72 29.55 68.60 2.03 48.75 16
13 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16
14 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16
15 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16
16 N -0.71 -13.46 4.53 -442.53 -2.00 -15.47 16
17 C 0.52 11.28 7.79 87.66 0.68 11.96 16
18 O -0.58 -16.90 15.64 -3.02 -0.05 -16.95 16
19 C -0.13 -2.16 5.68 29.85 0.17 -1.99 16
20 C -0.01 -0.15 5.13 29.85 0.15 0.01 16
21 C 0.25 5.84 7.49 88.39 0.66 6.50 16
22 N -0.51 -13.93 11.34 -296.26 -3.36 -17.29 16
23 C -0.01 -0.36 7.24 39.32 0.28 -0.07 16
24 C -0.08 -1.51 10.10 22.46 0.23 -1.28 16
25 C -0.11 -1.19 10.02 22.26 0.22 -0.96 16
26 C -0.08 -0.73 10.03 22.31 0.22 -0.51 16
27 C -0.10 -1.36 10.06 22.29 0.22 -1.14 16
28 C -0.02 -0.39 7.43 22.88 0.17 -0.22 16
29 O -0.22 -5.00 10.77 -9.98 -0.11 -5.11 16
30 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16
31 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16
32 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16
33 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16
34 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16
35 H 0.06 1.82 7.75 -2.39 -0.02 1.80 16
36 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16
37 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16
38 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16
39 H 0.37 20.80 7.67 -92.71 -0.71 20.09 16
40 H 0.25 15.29 8.31 -92.71 -0.77 14.52 16
41 H 0.41 5.96 8.60 -92.71 -0.80 5.16 16
42 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16
43 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16
44 H 0.11 2.31 8.10 -2.39 -0.02 2.29 16
45 H 0.12 1.93 8.10 -2.39 -0.02 1.91 16
46 H 0.14 2.30 8.06 -2.91 -0.02 2.28 16
47 H 0.17 0.66 8.06 -2.91 -0.02 0.64 16
48 H 0.18 0.15 8.06 -2.91 -0.02 0.12 16
49 H 0.16 1.33 8.06 -2.91 -0.02 1.31 16
Total: -1.00 -80.21 414.15 0.29 -79.92
By element:
Atomic # 1 Polarization: 31.74 SS G_CDS: -0.54 Total: 31.20 kcal
Atomic # 6 Polarization: -9.17 SS G_CDS: 5.97 Total: -3.20 kcal
Atomic # 7 Polarization: -127.60 SS G_CDS: -7.00 Total: -134.60 kcal
Atomic # 8 Polarization: -21.90 SS G_CDS: -0.15 Total: -22.06 kcal
Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.75 kcal
Total: -80.21 0.29 -79.92 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001506950279.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 45.811 kcal
(2) G-P(sol) polarization free energy of solvation -80.214 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.404 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.294 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.920 kcal
(6) G-S(sol) free energy of system = (1) + (5) -34.109 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.17 seconds