Wall clock time and date at job start Wed Apr 1 2020 04:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47506 * 2 1 4 4 N 1.46503 * 109.47117 * 119.99953 * 2 1 3 5 5 C 1.36935 * 120.00042 * 286.85497 * 4 2 1 6 6 H 1.08005 * 119.99975 * 0.02562 * 5 4 2 7 7 C 1.38815 * 119.99906 * 179.97438 * 5 4 2 8 8 N 1.31616 * 119.99989 * 180.02562 * 7 5 4 9 9 Si 1.86794 * 120.00029 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47362 * 89.99858 * 9 7 5 11 11 H 1.48504 * 109.47237 * 210.00260 * 9 7 5 12 12 H 1.48500 * 109.47055 * 329.99515 * 9 7 5 13 13 C 1.52994 * 109.47114 * 239.99955 * 2 1 3 14 14 H 1.08999 * 109.70447 * 287.05336 * 13 2 1 15 15 C 1.53625 * 109.66605 * 47.64677 * 13 2 1 16 16 C 1.53042 * 109.24560 * 174.54645 * 15 13 2 17 17 C 1.53042 * 109.53915 * 298.51308 * 16 15 13 18 18 C 1.53193 * 109.30933 * 61.36231 * 17 16 15 19 19 N 1.46925 * 108.77880 * 305.36491 * 18 17 16 20 20 C 1.34779 * 120.62724 * 233.58724 * 19 18 17 21 21 O 1.21558 * 119.99540 * 183.11191 * 20 19 18 22 22 C 1.47859 * 120.00368 * 3.11672 * 20 19 18 23 23 C 1.39702 * 120.07131 * 307.62168 * 22 20 19 24 24 C 1.38061 * 120.14339 * 180.02562 * 23 22 20 25 25 C 1.38104 * 120.29621 * 359.97438 * 24 23 22 26 26 C 1.39660 * 120.14278 * 0.28336 * 25 24 23 27 27 C 1.47862 * 120.07159 * 179.72262 * 26 25 24 28 28 N 1.34773 * 120.00142 * 359.97438 * 27 26 25 29 29 O 1.21552 * 120.00138 * 179.97438 * 27 26 25 30 30 C 1.39295 * 120.07224 * 127.64514 * 22 20 19 31 31 H 1.08992 * 109.47266 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46916 * 300.00130 * 1 2 3 33 33 H 1.08998 * 109.47110 * 59.99770 * 1 2 3 34 34 H 0.97001 * 119.99970 * 106.85588 * 4 2 1 35 35 H 0.96996 * 120.00114 * 180.02562 * 8 7 5 36 36 H 1.09008 * 109.63349 * 54.55921 * 15 13 2 37 37 H 1.09002 * 109.43179 * 294.41941 * 15 13 2 38 38 H 1.08993 * 109.46175 * 178.49036 * 16 15 13 39 39 H 1.09005 * 109.44244 * 58.52334 * 16 15 13 40 40 H 1.08997 * 109.49735 * 301.41504 * 17 16 15 41 41 H 1.09000 * 109.49431 * 181.31413 * 17 16 15 42 42 H 1.09004 * 109.58731 * 185.57732 * 18 17 16 43 43 H 1.09000 * 109.70420 * 65.22473 * 18 17 16 44 44 H 1.07998 * 119.92904 * 0.04533 * 23 22 20 45 45 H 1.07993 * 119.84856 * 180.02562 * 24 23 22 46 46 H 1.07997 * 119.92766 * 179.97438 * 25 24 23 47 47 H 0.97001 * 119.99810 * 0.02562 * 28 27 26 48 48 H 0.96998 * 120.00266 * 180.02562 * 28 27 26 49 49 H 1.08003 * 120.14797 * 359.97438 * 30 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.9224 -0.0878 2.4220 6 1 1.4863 0.8967 2.5070 7 6 2.3846 -0.7424 3.5554 8 7 2.2919 -0.1632 4.7337 9 14 3.1382 -2.4453 3.4085 10 1 4.6012 -2.3217 3.1863 11 1 2.8899 -3.2061 4.6595 12 1 2.5223 -3.1619 2.2630 13 6 2.0400 -0.7212 -1.2492 14 1 1.8788 -1.7942 -1.1456 15 6 1.2934 -0.2015 -2.4872 16 6 1.9029 -0.8278 -3.7436 17 6 3.3723 -0.4160 -3.8595 18 6 4.1412 -0.9333 -2.6397 19 7 3.4742 -0.4531 -1.4217 20 6 4.1662 0.2157 -0.4782 21 8 3.6163 0.5583 0.5503 22 6 5.5942 0.5328 -0.6940 23 6 6.4904 -0.4791 -1.0469 24 6 7.8241 -0.1848 -1.2483 25 6 8.2814 1.1102 -1.1032 26 6 7.3972 2.1303 -0.7455 27 6 7.8896 3.5152 -0.5846 28 7 9.1932 3.7941 -0.7826 29 8 7.1188 4.4021 -0.2737 30 6 6.0489 1.8410 -0.5455 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 2.4097 -1.5749 1.1199 35 1 2.6153 -0.6204 5.5256 36 1 1.3841 0.8834 -2.5410 37 1 0.2409 -0.4761 -2.4177 38 1 1.3585 -0.4822 -4.6223 39 1 1.8342 -1.9137 -3.6776 40 1 3.4434 0.6709 -3.9003 41 1 3.7994 -0.8433 -4.7668 42 1 5.1647 -0.5595 -2.6673 43 1 4.1500 -2.0232 -2.6459 44 1 6.1391 -1.4938 -1.1627 45 1 8.5127 -0.9707 -1.5214 46 1 9.3261 1.3337 -1.2618 47 1 9.8083 3.0864 -1.0310 48 1 9.5164 4.7025 -0.6766 49 1 5.3601 2.6270 -0.2729 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566527590.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:43 Heat of formation + Delta-G solvation = 13.130950 kcal Electronic energy + Delta-G solvation = -31937.763757 eV Core-core repulsion = 27866.797856 eV Total energy + Delta-G solvation = -4070.965901 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.73079 -39.87204 -38.21288 -36.89406 -35.37472 -34.04135 -32.82950 -32.20069 -31.21783 -30.92959 -30.18763 -28.13241 -25.53661 -24.48797 -24.15539 -23.27670 -22.33176 -21.27323 -20.52975 -19.97276 -19.31605 -18.23614 -17.27308 -16.88030 -16.42220 -16.19050 -15.73314 -15.15090 -14.85943 -14.76270 -14.62055 -14.39527 -14.36117 -13.95331 -13.87341 -13.53819 -13.44392 -13.00998 -12.76186 -12.48963 -12.44133 -12.25721 -12.16618 -12.08048 -11.50480 -11.43217 -11.36484 -11.02979 -10.89673 -10.70491 -10.65439 -10.45042 -10.24269 -10.10885 -9.94240 -9.81181 -9.30371 -9.15306 -9.10554 -8.66475 -8.43883 -8.12534 -6.79534 -5.46011 -2.73598 0.60182 1.07339 2.61719 3.09868 3.27701 3.36149 3.50259 3.54123 3.58517 3.76434 4.48115 4.53897 4.66067 4.71924 4.80018 4.84037 4.84804 4.95959 5.05119 5.07162 5.27541 5.32267 5.37356 5.49109 5.53928 5.66807 5.69915 5.74586 5.79007 5.83967 5.91397 6.00396 6.02961 6.05764 6.07449 6.09083 6.23827 6.29752 6.39311 6.41177 6.51300 6.60269 6.63439 6.83179 7.03818 7.07921 7.30509 7.78800 8.04965 8.28923 8.70780 8.79023 9.51051 10.24025 10.44473 11.74592 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.008527 B = 0.004761 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3283.011490 B = 5880.256560 C = 7581.974445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.186 3.814 3 H 0.068 0.932 4 N -0.721 5.721 5 C -0.187 4.187 6 H 0.086 0.914 7 C -0.008 4.008 8 N -0.947 5.947 9 Si 0.879 3.121 10 H -0.291 1.291 11 H -0.297 1.297 12 H -0.283 1.283 13 C 0.145 3.855 14 H 0.066 0.934 15 C -0.128 4.128 16 C -0.119 4.119 17 C -0.134 4.134 18 C 0.102 3.898 19 N -0.611 5.611 20 C 0.511 3.489 21 O -0.419 6.419 22 C -0.111 4.111 23 C -0.070 4.070 24 C -0.132 4.132 25 C -0.078 4.078 26 C -0.144 4.144 27 C 0.564 3.436 28 N -0.853 5.853 29 O -0.532 6.532 30 C -0.013 4.013 31 H 0.043 0.957 32 H 0.060 0.940 33 H 0.040 0.960 34 H 0.353 0.647 35 H 0.253 0.747 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.086 0.914 43 H 0.063 0.937 44 H 0.132 0.868 45 H 0.132 0.868 46 H 0.126 0.874 47 H 0.399 0.601 48 H 0.404 0.596 49 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.617 -0.886 -23.101 26.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.076 3.924 3 H 0.086 0.914 4 N -0.363 5.363 5 C -0.318 4.318 6 H 0.104 0.896 7 C -0.201 4.201 8 N -0.598 5.598 9 Si 0.712 3.288 10 H -0.219 1.219 11 H -0.224 1.224 12 H -0.210 1.210 13 C 0.042 3.958 14 H 0.084 0.916 15 C -0.167 4.167 16 C -0.157 4.157 17 C -0.172 4.172 18 C -0.021 4.021 19 N -0.348 5.348 20 C 0.296 3.704 21 O -0.286 6.286 22 C -0.115 4.115 23 C -0.088 4.088 24 C -0.150 4.150 25 C -0.097 4.097 26 C -0.147 4.147 27 C 0.350 3.650 28 N -0.418 5.418 29 O -0.409 6.409 30 C -0.032 4.032 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.059 0.941 34 H 0.185 0.815 35 H 0.063 0.937 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.104 0.896 43 H 0.081 0.919 44 H 0.150 0.850 45 H 0.150 0.850 46 H 0.144 0.856 47 H 0.229 0.771 48 H 0.236 0.764 49 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 11.623 -0.066 -22.085 24.957 hybrid contribution 1.326 -1.483 -0.104 1.992 sum 12.949 -1.548 -22.189 25.738 Atomic orbital electron populations 1.22534 0.99046 1.00716 1.00565 1.20401 0.90799 0.97079 0.84084 0.91447 1.42629 1.72944 1.17299 1.03412 1.18897 1.30295 1.00370 0.82200 0.89642 1.24512 1.02440 0.97666 0.95475 1.69684 1.54624 1.37917 0.97579 0.86603 0.79443 0.86733 0.76064 1.21888 1.22365 1.21024 1.21665 0.78788 0.99434 0.95942 0.91627 1.22095 0.99782 1.01095 0.93692 1.21527 0.95476 1.00628 0.98021 1.21910 0.96113 1.01682 0.97492 1.21856 0.97102 0.98717 0.84432 1.47868 1.09374 1.57874 1.19712 1.18420 0.85764 0.81782 0.84482 1.91404 1.66791 1.46861 1.23552 1.20223 0.95378 0.94028 1.01836 1.21565 0.93190 0.99134 0.94955 1.20996 0.95539 0.96474 1.02013 1.21320 0.98760 0.92710 0.96914 1.19762 0.94737 0.93221 1.07013 1.18257 0.82254 0.88313 0.76135 1.43725 1.09581 1.14358 1.74104 1.90860 1.55568 1.47880 1.46551 1.21297 0.94384 0.95917 0.91626 0.93773 0.92096 0.94086 0.81483 0.93718 0.91355 0.90371 0.91964 0.91996 0.91510 0.91266 0.89579 0.91921 0.85040 0.84965 0.85570 0.77109 0.76446 0.83839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.08 8.62 37.16 0.32 -2.76 16 2 C 0.19 3.74 1.84 -67.93 -0.12 3.61 16 3 H 0.07 1.53 6.28 -51.93 -0.33 1.21 16 4 N -0.72 -17.91 3.07 -53.42 -0.16 -18.08 16 5 C -0.19 -5.59 8.80 -15.06 -0.13 -5.72 16 6 H 0.09 2.79 8.06 -52.48 -0.42 2.37 16 7 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 8 N -0.95 -31.84 13.97 55.49 0.78 -31.07 16 9 Si 0.88 23.90 27.74 -169.99 -4.71 19.19 16 10 H -0.29 -7.99 7.11 56.52 0.40 -7.58 16 11 H -0.30 -8.15 7.11 56.52 0.40 -7.75 16 12 H -0.28 -7.22 6.52 56.52 0.37 -6.85 16 13 C 0.14 2.26 2.63 -67.38 -0.18 2.08 16 14 H 0.07 1.04 8.11 -51.93 -0.42 0.62 16 15 C -0.13 -1.55 4.43 -26.38 -0.12 -1.66 16 16 C -0.12 -1.13 5.88 -26.69 -0.16 -1.28 16 17 C -0.13 -1.21 6.08 -26.61 -0.16 -1.37 16 18 C 0.10 1.08 5.43 -3.71 -0.02 1.06 16 19 N -0.61 -9.10 2.97 -166.06 -0.49 -9.60 16 20 C 0.51 9.30 6.97 -12.32 -0.09 9.22 16 21 O -0.42 -9.90 10.11 5.31 0.05 -9.85 16 22 C -0.11 -1.69 4.92 -105.02 -0.52 -2.21 16 23 C -0.07 -0.82 7.40 -39.10 -0.29 -1.11 16 24 C -0.13 -1.20 10.02 -39.70 -0.40 -1.60 16 25 C -0.08 -0.70 9.54 -39.10 -0.37 -1.08 16 26 C -0.14 -1.81 5.87 -105.02 -0.62 -2.42 16 27 C 0.56 7.23 8.05 -12.32 -0.10 7.13 16 28 N -0.85 -6.41 8.82 30.53 0.27 -6.14 16 29 O -0.53 -9.29 17.18 5.32 0.09 -9.20 16 30 C -0.01 -0.20 9.29 -38.78 -0.36 -0.56 16 31 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 1.26 7.98 -51.93 -0.41 0.85 16 33 H 0.04 0.61 6.45 -51.93 -0.33 0.28 16 34 H 0.35 8.82 5.54 -40.82 -0.23 8.59 16 35 H 0.25 8.16 8.31 -40.82 -0.34 7.82 16 36 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16 37 H 0.08 0.89 6.71 -51.93 -0.35 0.54 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.09 0.83 4.70 -51.93 -0.24 0.59 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.13 1.37 7.25 -52.49 -0.38 0.99 16 45 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 46 H 0.13 0.63 6.39 -52.49 -0.34 0.29 16 47 H 0.40 1.68 6.85 -40.82 -0.28 1.40 16 48 H 0.40 2.52 8.93 -40.82 -0.36 2.15 16 49 H 0.14 2.53 7.65 -52.48 -0.40 2.13 16 LS Contribution 380.08 15.07 5.73 5.73 Total: -1.00 -39.60 380.08 -8.91 -48.50 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -7.05 Total: 9.52 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: -3.40 Total: 0.99 kcal Atomic # 7 Polarization: -65.27 SS G_CDS: 0.39 Total: -64.88 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: 0.15 Total: -19.05 kcal Atomic # 14 Polarization: 23.90 SS G_CDS: -4.71 Total: 19.19 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -39.60 -8.91 -48.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566527590.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.633 kcal (2) G-P(sol) polarization free energy of solvation -39.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds