Wall clock time and date at job start Wed Apr 1 2020 04:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47506 * 2 1 4 4 N 1.46503 * 109.47117 * 119.99953 * 2 1 3 5 5 C 1.36935 * 120.00042 * 286.85497 * 4 2 1 6 6 H 1.08005 * 119.99975 * 0.02562 * 5 4 2 7 7 C 1.38815 * 119.99906 * 179.97438 * 5 4 2 8 8 N 1.31616 * 119.99989 * 180.02562 * 7 5 4 9 9 Si 1.86794 * 120.00029 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47362 * 89.99858 * 9 7 5 11 11 H 1.48504 * 109.47237 * 210.00260 * 9 7 5 12 12 H 1.48500 * 109.47055 * 329.99515 * 9 7 5 13 13 C 1.52994 * 109.47114 * 239.99955 * 2 1 3 14 14 H 1.08999 * 109.70447 * 287.05336 * 13 2 1 15 15 C 1.53625 * 109.66605 * 47.64677 * 13 2 1 16 16 C 1.53042 * 109.24560 * 174.54645 * 15 13 2 17 17 C 1.53042 * 109.53915 * 298.51308 * 16 15 13 18 18 C 1.53193 * 109.30933 * 61.36231 * 17 16 15 19 19 N 1.46925 * 108.77880 * 305.36491 * 18 17 16 20 20 C 1.34779 * 120.62724 * 233.58724 * 19 18 17 21 21 O 1.21558 * 119.99540 * 183.11191 * 20 19 18 22 22 C 1.47859 * 120.00368 * 3.11672 * 20 19 18 23 23 C 1.39702 * 120.07131 * 307.62168 * 22 20 19 24 24 C 1.38061 * 120.14339 * 180.02562 * 23 22 20 25 25 C 1.38104 * 120.29621 * 359.97438 * 24 23 22 26 26 C 1.39660 * 120.14278 * 0.28336 * 25 24 23 27 27 C 1.47862 * 120.07159 * 179.72262 * 26 25 24 28 28 N 1.34773 * 120.00142 * 359.97438 * 27 26 25 29 29 O 1.21552 * 120.00138 * 179.97438 * 27 26 25 30 30 C 1.39295 * 120.07224 * 127.64514 * 22 20 19 31 31 H 1.08992 * 109.47266 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46916 * 300.00130 * 1 2 3 33 33 H 1.08998 * 109.47110 * 59.99770 * 1 2 3 34 34 H 0.97001 * 119.99970 * 106.85588 * 4 2 1 35 35 H 0.96996 * 120.00114 * 180.02562 * 8 7 5 36 36 H 1.09008 * 109.63349 * 54.55921 * 15 13 2 37 37 H 1.09002 * 109.43179 * 294.41941 * 15 13 2 38 38 H 1.08993 * 109.46175 * 178.49036 * 16 15 13 39 39 H 1.09005 * 109.44244 * 58.52334 * 16 15 13 40 40 H 1.08997 * 109.49735 * 301.41504 * 17 16 15 41 41 H 1.09000 * 109.49431 * 181.31413 * 17 16 15 42 42 H 1.09004 * 109.58731 * 185.57732 * 18 17 16 43 43 H 1.09000 * 109.70420 * 65.22473 * 18 17 16 44 44 H 1.07998 * 119.92904 * 0.04533 * 23 22 20 45 45 H 1.07993 * 119.84856 * 180.02562 * 24 23 22 46 46 H 1.07997 * 119.92766 * 179.97438 * 25 24 23 47 47 H 0.97001 * 119.99810 * 0.02562 * 28 27 26 48 48 H 0.96998 * 120.00266 * 180.02562 * 28 27 26 49 49 H 1.08003 * 120.14797 * 359.97438 * 30 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.9224 -0.0878 2.4220 6 1 1.4863 0.8967 2.5070 7 6 2.3846 -0.7424 3.5554 8 7 2.2919 -0.1632 4.7337 9 14 3.1382 -2.4453 3.4085 10 1 4.6012 -2.3217 3.1863 11 1 2.8899 -3.2061 4.6595 12 1 2.5223 -3.1619 2.2630 13 6 2.0400 -0.7212 -1.2492 14 1 1.8788 -1.7942 -1.1456 15 6 1.2934 -0.2015 -2.4872 16 6 1.9029 -0.8278 -3.7436 17 6 3.3723 -0.4160 -3.8595 18 6 4.1412 -0.9333 -2.6397 19 7 3.4742 -0.4531 -1.4217 20 6 4.1662 0.2157 -0.4782 21 8 3.6163 0.5583 0.5503 22 6 5.5942 0.5328 -0.6940 23 6 6.4904 -0.4791 -1.0469 24 6 7.8241 -0.1848 -1.2483 25 6 8.2814 1.1102 -1.1032 26 6 7.3972 2.1303 -0.7455 27 6 7.8896 3.5152 -0.5846 28 7 9.1932 3.7941 -0.7826 29 8 7.1188 4.4021 -0.2737 30 6 6.0489 1.8410 -0.5455 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 2.4097 -1.5749 1.1199 35 1 2.6153 -0.6204 5.5256 36 1 1.3841 0.8834 -2.5410 37 1 0.2409 -0.4761 -2.4177 38 1 1.3585 -0.4822 -4.6223 39 1 1.8342 -1.9137 -3.6776 40 1 3.4434 0.6709 -3.9003 41 1 3.7994 -0.8433 -4.7668 42 1 5.1647 -0.5595 -2.6673 43 1 4.1500 -2.0232 -2.6459 44 1 6.1391 -1.4938 -1.1627 45 1 8.5127 -0.9707 -1.5214 46 1 9.3261 1.3337 -1.2618 47 1 9.8083 3.0864 -1.0310 48 1 9.5164 4.7025 -0.6766 49 1 5.3601 2.6270 -0.2729 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566527590.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:42 Heat of formation + Delta-G solvation = -18.397334 kcal Electronic energy + Delta-G solvation = -31939.130925 eV Core-core repulsion = 27866.797856 eV Total energy + Delta-G solvation = -4072.333070 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.90083 -40.94793 -39.25318 -38.12264 -37.02794 -35.01335 -34.29179 -33.76871 -32.19883 -32.06174 -31.77927 -29.63016 -26.78859 -25.86839 -25.28528 -24.41674 -23.79714 -22.22711 -21.76502 -21.30802 -20.52126 -19.59373 -18.85422 -17.90988 -17.48690 -17.13331 -16.98802 -16.71608 -16.16065 -15.95534 -15.84106 -15.60245 -15.52020 -15.24716 -14.85283 -14.70937 -14.64678 -14.45901 -14.30226 -13.93392 -13.82740 -13.68177 -13.45222 -13.11794 -12.97772 -12.89708 -12.64181 -12.43324 -12.31140 -12.08870 -11.90281 -11.71807 -11.70317 -11.45895 -11.31633 -11.23339 -10.86813 -10.81609 -10.22050 -10.04777 -9.77928 -9.48936 -8.90485 -7.87901 -5.11404 -0.32351 0.08882 1.27832 1.36342 1.42384 1.63578 1.91528 2.12249 2.46427 2.55781 2.76950 3.43348 3.46066 3.64632 3.73827 3.84268 3.85387 3.96093 4.04132 4.09159 4.15086 4.24986 4.31657 4.32920 4.39437 4.57892 4.63614 4.69268 4.75218 4.81333 4.85427 4.90947 4.99701 5.04737 5.10956 5.16138 5.18378 5.23765 5.27137 5.28739 5.39523 5.45158 5.53990 5.72024 5.82035 5.86038 5.88965 6.34150 6.36301 6.56072 7.22554 7.23155 7.46927 8.00108 8.19942 9.37160 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.008527 B = 0.004761 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3283.011490 B = 5880.256560 C = 7581.974445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.181 3.819 3 H 0.030 0.970 4 N -0.717 5.717 5 C -0.158 4.158 6 H 0.035 0.965 7 C -0.089 4.089 8 N -1.004 6.004 9 Si 0.957 3.043 10 H -0.292 1.292 11 H -0.299 1.299 12 H -0.252 1.252 13 C 0.148 3.852 14 H 0.075 0.925 15 C -0.123 4.123 16 C -0.113 4.113 17 C -0.129 4.129 18 C 0.095 3.905 19 N -0.606 5.606 20 C 0.508 3.492 21 O -0.499 6.499 22 C -0.136 4.136 23 C -0.067 4.067 24 C -0.114 4.114 25 C -0.055 4.055 26 C -0.155 4.155 27 C 0.559 3.441 28 N -0.821 5.821 29 O -0.595 6.595 30 C -0.045 4.045 31 H 0.056 0.944 32 H 0.022 0.978 33 H 0.077 0.923 34 H 0.355 0.645 35 H 0.249 0.751 36 H 0.053 0.947 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.051 0.949 41 H 0.103 0.897 42 H 0.097 0.903 43 H 0.087 0.913 44 H 0.150 0.850 45 H 0.184 0.816 46 H 0.179 0.821 47 H 0.420 0.580 48 H 0.414 0.586 49 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.062 -4.790 -27.888 32.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.074 3.926 3 H 0.047 0.953 4 N -0.358 5.358 5 C -0.290 4.290 6 H 0.053 0.947 7 C -0.277 4.277 8 N -0.659 5.659 9 Si 0.787 3.213 10 H -0.220 1.220 11 H -0.226 1.226 12 H -0.177 1.177 13 C 0.045 3.955 14 H 0.093 0.907 15 C -0.161 4.161 16 C -0.151 4.151 17 C -0.168 4.168 18 C -0.027 4.027 19 N -0.341 5.341 20 C 0.294 3.706 21 O -0.372 6.372 22 C -0.139 4.139 23 C -0.086 4.086 24 C -0.131 4.131 25 C -0.073 4.073 26 C -0.158 4.158 27 C 0.345 3.655 28 N -0.386 5.386 29 O -0.477 6.477 30 C -0.065 4.065 31 H 0.075 0.925 32 H 0.041 0.959 33 H 0.096 0.904 34 H 0.188 0.812 35 H 0.057 0.943 36 H 0.072 0.928 37 H 0.108 0.892 38 H 0.100 0.900 39 H 0.094 0.906 40 H 0.070 0.930 41 H 0.121 0.879 42 H 0.115 0.885 43 H 0.105 0.895 44 H 0.168 0.832 45 H 0.201 0.799 46 H 0.196 0.804 47 H 0.254 0.746 48 H 0.246 0.754 49 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 15.116 -4.010 -27.028 31.227 hybrid contribution 0.355 -0.111 1.224 1.280 sum 15.471 -4.122 -25.804 30.368 Atomic orbital electron populations 1.22392 0.97514 1.01437 1.00489 1.20475 0.91691 0.95609 0.84851 0.95263 1.42498 1.73095 1.17209 1.03027 1.18711 1.27604 0.98135 0.84544 0.94673 1.25338 1.04467 1.02893 0.94974 1.69912 1.57242 1.40247 0.98519 0.85336 0.78103 0.81089 0.76810 1.21988 1.22604 1.17662 1.21575 0.79808 0.99139 0.94990 0.90694 1.22067 1.00209 1.00397 0.93449 1.21523 0.95579 1.01217 0.96752 1.21910 0.95909 1.00983 0.97951 1.22236 0.97590 1.00061 0.82769 1.48015 1.09104 1.56567 1.20420 1.19040 0.87155 0.80436 0.83935 1.91360 1.68697 1.50386 1.26766 1.20007 0.94311 0.94840 1.04783 1.21823 0.93960 0.98705 0.94082 1.21562 0.94744 0.97530 0.99266 1.21876 1.00342 0.91552 0.93513 1.19825 0.93945 0.94256 1.07786 1.18473 0.83370 0.87977 0.75659 1.43451 1.07824 1.15683 1.71676 1.90835 1.57559 1.49537 1.49773 1.21049 0.95614 0.95389 0.94467 0.92471 0.95894 0.90447 0.81250 0.94277 0.92774 0.89203 0.89997 0.90559 0.92981 0.87875 0.88495 0.89492 0.83220 0.79914 0.80353 0.74627 0.75353 0.88685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.00 8.62 71.98 0.62 -5.38 16 2 C 0.18 7.71 1.84 44.99 0.08 7.80 16 3 H 0.03 1.49 6.28 -2.38 -0.01 1.47 16 4 N -0.72 -37.28 3.07 -322.93 -0.99 -38.27 16 5 C -0.16 -10.14 8.80 84.03 0.74 -9.41 16 6 H 0.04 2.55 8.06 -2.91 -0.02 2.53 16 7 C -0.09 -5.87 5.50 84.86 0.47 -5.40 16 8 N -1.00 -71.93 13.97 21.65 0.30 -71.63 16 9 Si 0.96 51.20 27.74 68.60 1.90 53.10 16 10 H -0.29 -15.55 7.11 99.48 0.71 -14.84 16 11 H -0.30 -15.97 7.11 99.48 0.71 -15.26 16 12 H -0.25 -11.96 6.52 99.48 0.65 -11.31 16 13 C 0.15 4.53 2.63 45.12 0.12 4.65 16 14 H 0.08 2.19 8.11 -2.39 -0.02 2.18 16 15 C -0.12 -2.74 4.43 30.82 0.14 -2.60 16 16 C -0.11 -1.69 5.88 30.62 0.18 -1.51 16 17 C -0.13 -1.85 6.08 30.67 0.19 -1.67 16 18 C 0.09 1.69 5.43 86.36 0.47 2.15 16 19 N -0.61 -17.74 2.97 -797.58 -2.37 -20.10 16 20 C 0.51 19.47 6.97 86.79 0.60 20.08 16 21 O -0.50 -25.82 10.11 -3.90 -0.04 -25.86 16 22 C -0.14 -4.24 4.92 -20.12 -0.10 -4.34 16 23 C -0.07 -1.36 7.40 22.58 0.17 -1.20 16 24 C -0.11 -1.42 10.02 22.20 0.22 -1.20 16 25 C -0.05 -0.73 9.54 22.58 0.22 -0.51 16 26 C -0.15 -3.81 5.87 -20.12 -0.12 -3.93 16 27 C 0.56 14.44 8.05 86.79 0.70 15.14 16 28 N -0.82 -10.43 8.82 -175.59 -1.55 -11.98 16 29 O -0.60 -22.57 17.18 -3.88 -0.07 -22.63 16 30 C -0.05 -1.52 9.29 22.79 0.21 -1.31 16 31 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.02 1.00 7.98 -2.39 -0.02 0.98 16 33 H 0.08 2.32 6.45 -2.39 -0.02 2.31 16 34 H 0.35 17.85 5.54 -92.71 -0.51 17.34 16 35 H 0.25 17.00 8.31 -92.71 -0.77 16.23 16 36 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 37 H 0.09 1.80 6.71 -2.39 -0.02 1.79 16 38 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 40 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.10 1.54 4.70 -2.38 -0.01 1.53 16 43 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.15 2.47 7.25 -2.91 -0.02 2.44 16 45 H 0.18 0.62 8.06 -2.91 -0.02 0.60 16 46 H 0.18 0.48 6.39 -2.91 -0.02 0.47 16 47 H 0.42 1.64 6.85 -92.71 -0.64 1.00 16 48 H 0.41 4.36 8.93 -92.71 -0.83 3.53 16 49 H 0.09 4.00 7.65 -2.91 -0.02 3.98 16 Total: -1.00 -101.96 380.08 1.07 -100.89 By element: Atomic # 1 Polarization: 26.16 SS G_CDS: -1.03 Total: 25.13 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: 4.90 Total: 11.36 kcal Atomic # 7 Polarization: -137.38 SS G_CDS: -4.60 Total: -141.99 kcal Atomic # 8 Polarization: -48.39 SS G_CDS: -0.11 Total: -48.50 kcal Atomic # 14 Polarization: 51.20 SS G_CDS: 1.90 Total: 53.10 kcal Total: -101.96 1.07 -100.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566527590.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.492 kcal (2) G-P(sol) polarization free energy of solvation -101.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds