Wall clock time and date at job start Wed Apr 1 2020 03:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47065 * 2 1 4 4 C 1.50698 * 109.47207 * 120.00989 * 2 1 3 5 5 O 1.21283 * 120.00472 * 119.99880 * 4 2 1 6 6 N 1.34777 * 119.99538 * 299.99218 * 4 2 1 7 7 C 1.46499 * 119.99665 * 179.72653 * 6 4 2 8 8 C 1.53004 * 109.47198 * 180.27868 * 7 6 4 9 9 H 1.09003 * 112.74481 * 284.23070 * 8 7 6 10 10 C 1.53512 * 113.47592 * 153.37803 * 8 7 6 11 11 C 1.53507 * 83.57379 * 219.20843 * 10 8 7 12 12 N 1.47471 * 87.93235 * 26.02702 * 11 10 8 13 13 C 1.46903 * 111.00225 * 221.29118 * 12 11 10 14 14 C 1.50700 * 109.47278 * 265.97219 * 13 12 11 15 15 O 1.21285 * 120.00092 * 0.02562 * 14 13 12 16 16 N 1.34778 * 119.99726 * 179.97438 * 14 13 12 17 17 C 1.37102 * 119.99920 * 180.02562 * 16 14 13 18 18 H 1.08001 * 119.99537 * 0.02562 * 17 16 14 19 19 C 1.38947 * 120.00182 * 179.97438 * 17 16 14 20 20 N 1.31407 * 120.00367 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 119.99888 * 0.02562 * 19 17 16 22 22 H 1.48504 * 109.47401 * 89.99678 * 21 19 17 23 23 H 1.48503 * 109.47131 * 209.99761 * 21 19 17 24 24 H 1.48500 * 109.46818 * 329.99562 * 21 19 17 25 25 C 1.50698 * 109.46679 * 240.00551 * 2 1 3 26 26 C 1.38240 * 120.00131 * 299.72748 * 25 2 1 27 27 C 1.38238 * 119.99947 * 179.76792 * 26 25 2 28 28 C 1.38240 * 119.99850 * 0.48396 * 27 26 25 29 29 C 1.38234 * 119.99872 * 359.78894 * 28 27 26 30 30 C 1.38226 * 120.00346 * 359.96097 * 29 28 27 31 31 H 1.08995 * 109.47475 * 59.99036 * 1 2 3 32 32 H 1.09001 * 109.47406 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47038 * 299.99432 * 1 2 3 34 34 H 0.97001 * 120.00485 * 0.02562 * 6 4 2 35 35 H 1.09009 * 109.47454 * 300.27637 * 7 6 4 36 36 H 1.08998 * 109.47492 * 60.27932 * 7 6 4 37 37 H 1.08997 * 114.17267 * 332.85934 * 10 8 7 38 38 H 1.09008 * 114.16843 * 105.56620 * 10 8 7 39 39 H 1.08999 * 113.48178 * 271.25954 * 11 10 8 40 40 H 1.09007 * 113.52829 * 140.80512 * 11 10 8 41 41 H 1.09004 * 109.46820 * 25.97507 * 13 12 11 42 42 H 1.09000 * 109.47250 * 145.96967 * 13 12 11 43 43 H 0.97000 * 120.00194 * 0.02562 * 16 14 13 44 44 H 0.96993 * 120.00273 * 179.97438 * 20 19 17 45 45 H 1.07994 * 119.99915 * 0.02562 * 26 25 2 46 46 H 1.08001 * 120.00240 * 180.25014 * 27 26 25 47 47 H 1.07999 * 119.99390 * 179.76818 * 28 27 26 48 48 H 1.08003 * 119.99448 * 179.97438 * 29 28 27 49 49 H 1.08004 * 120.00377 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7106 1.2303 5 8 2.7296 -1.6967 1.1190 6 7 1.7068 -0.2502 2.4545 7 6 2.1902 -0.9445 3.6505 8 6 1.6757 -0.2266 4.8999 9 1 2.2140 0.6986 5.1061 10 6 1.5450 -1.1452 6.1228 11 6 0.2633 -0.3390 6.3757 12 7 0.2094 -0.0715 4.9264 13 6 -0.1777 1.3207 4.6621 14 6 -1.6682 1.3968 4.4536 15 8 -2.3419 0.3904 4.5192 16 7 -2.2528 2.5834 4.1952 17 6 -3.6089 2.6527 4.0060 18 1 -4.2088 1.7565 4.0644 19 6 -4.2117 3.8761 3.7401 20 7 -5.5114 3.9425 3.5582 21 14 -3.1742 5.4263 3.6397 22 1 -2.7189 5.6276 2.2406 23 1 -3.9855 6.5936 4.0690 24 1 -1.9933 5.2900 4.5298 25 6 2.0322 -0.7103 -1.2305 26 6 1.7029 -2.0354 -1.4466 27 6 2.1596 -2.6855 -2.5778 28 6 2.9540 -2.0135 -3.4880 29 6 3.2880 -0.6901 -3.2690 30 6 2.8270 -0.0385 -2.1405 31 1 -0.3634 0.5139 -0.8898 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3633 0.5137 0.8900 34 1 1.1490 0.5383 2.5436 35 1 1.8264 -1.9720 3.6462 36 1 3.2802 -0.9450 3.6548 37 1 1.3721 -2.1930 5.8775 38 1 2.3198 -0.9993 6.8755 39 1 0.4246 0.5558 6.9767 40 1 -0.5678 -0.9450 6.7367 41 1 0.1026 1.9433 5.5118 42 1 0.3330 1.6762 3.7671 43 1 -1.7141 3.3884 4.1430 44 1 -5.9322 4.7966 3.3730 45 1 1.0853 -2.5614 -0.7337 46 1 1.8990 -3.7196 -2.7487 47 1 3.3139 -2.5226 -4.3698 48 1 3.9089 -0.1652 -3.9799 49 1 3.0876 0.9956 -1.9697 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569381299.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:05 Heat of formation + Delta-G solvation = -4.070043 kcal Electronic energy + Delta-G solvation = -30214.244554 eV Core-core repulsion = 26142.532763 eV Total energy + Delta-G solvation = -4071.711792 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.73094 -40.07207 -38.63043 -37.99016 -34.57612 -34.25070 -33.98991 -31.78160 -30.97880 -30.96648 -29.69266 -28.17638 -26.02624 -24.83600 -23.64713 -23.28183 -22.64438 -21.69568 -20.20819 -19.59958 -19.44548 -18.42757 -17.35347 -16.96582 -16.27009 -16.20877 -15.69743 -15.52807 -15.19271 -15.05859 -14.85208 -14.66774 -14.29191 -13.87002 -13.76299 -13.56200 -13.36426 -13.32240 -13.04172 -12.76365 -12.65322 -12.28295 -12.26695 -12.22634 -11.99445 -11.68291 -11.65777 -11.48218 -11.22815 -11.05360 -11.01114 -10.98648 -10.66402 -10.62415 -10.02034 -9.74455 -9.61254 -9.07031 -8.96814 -8.93683 -8.78572 -8.39891 -8.22556 -6.35071 -3.86835 1.26281 1.37304 2.64142 2.96588 3.01087 3.09384 3.10794 3.65686 3.73709 3.84726 4.05376 4.31102 4.44492 4.59353 4.62059 4.72239 4.81508 4.91227 4.93908 5.02368 5.06643 5.10385 5.12283 5.18727 5.25944 5.29639 5.41287 5.42919 5.49992 5.53831 5.64001 5.70055 5.75352 5.79570 5.81098 5.90191 5.92496 5.98611 6.07046 6.14531 6.27920 6.37756 6.44987 6.47500 6.55613 6.93104 6.99722 7.47341 7.53276 8.09522 8.21318 8.55611 8.91286 9.37619 9.78660 10.78110 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009073 B = 0.003086 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3085.332625 B = 9071.497401 C =11271.646362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.073 4.073 3 H 0.102 0.898 4 C 0.519 3.481 5 O -0.537 6.537 6 N -0.720 5.720 7 C 0.142 3.858 8 C 0.004 3.996 9 H 0.082 0.918 10 C -0.133 4.133 11 C 0.004 3.996 12 N -0.432 5.432 13 C 0.003 3.997 14 C 0.454 3.546 15 O -0.552 6.552 16 N -0.593 5.593 17 C -0.304 4.304 18 H 0.119 0.881 19 C 0.042 3.958 20 N -0.881 5.881 21 Si 0.878 3.122 22 H -0.270 1.270 23 H -0.277 1.277 24 H -0.271 1.271 25 C -0.063 4.063 26 C -0.082 4.082 27 C -0.123 4.123 28 C -0.123 4.123 29 C -0.125 4.125 30 C -0.113 4.113 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.400 0.600 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.097 0.903 38 H 0.078 0.922 39 H 0.068 0.932 40 H 0.092 0.908 41 H 0.063 0.937 42 H 0.080 0.920 43 H 0.369 0.631 44 H 0.273 0.727 45 H 0.120 0.880 46 H 0.120 0.880 47 H 0.118 0.882 48 H 0.119 0.881 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.156 -5.143 -5.350 21.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.094 4.094 3 H 0.120 0.880 4 C 0.305 3.695 5 O -0.413 6.413 6 N -0.373 5.373 7 C 0.017 3.983 8 C -0.107 4.107 9 H 0.100 0.900 10 C -0.171 4.171 11 C -0.125 4.125 12 N -0.154 5.154 13 C -0.129 4.129 14 C 0.239 3.761 15 O -0.433 6.433 16 N -0.233 5.233 17 C -0.433 4.433 18 H 0.137 0.863 19 C -0.161 4.161 20 N -0.521 5.521 21 Si 0.705 3.295 22 H -0.196 1.196 23 H -0.202 1.202 24 H -0.196 1.196 25 C -0.064 4.064 26 C -0.100 4.100 27 C -0.141 4.141 28 C -0.141 4.141 29 C -0.143 4.143 30 C -0.132 4.132 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.236 0.764 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.115 0.885 38 H 0.096 0.904 39 H 0.086 0.914 40 H 0.110 0.890 41 H 0.081 0.919 42 H 0.098 0.902 43 H 0.201 0.799 44 H 0.084 0.916 45 H 0.138 0.862 46 H 0.138 0.862 47 H 0.136 0.864 48 H 0.138 0.862 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 19.539 -6.788 -5.875 21.503 hybrid contribution 0.806 2.569 0.465 2.732 sum 20.346 -4.219 -5.411 21.471 Atomic orbital electron populations 1.21816 0.91138 1.03526 1.03540 1.20326 0.98285 1.00021 0.90801 0.87960 1.20445 0.80020 0.84607 0.84414 1.90701 1.37854 1.26067 1.86725 1.45930 1.53680 1.32288 1.05383 1.21300 0.98140 0.96704 0.82111 1.23796 0.91906 0.99351 0.95608 0.90000 1.23155 0.97876 0.99760 0.96296 1.23771 0.98608 0.99740 0.90367 1.68868 1.09991 1.20908 1.15669 1.22622 0.97389 0.91394 1.01498 1.19489 0.88083 0.84250 0.84312 1.90584 1.64272 1.34538 1.53872 1.42228 1.08712 1.07250 1.65110 1.19411 0.80873 0.97394 1.45602 0.86300 1.25028 0.95682 0.97769 0.97629 1.69612 1.08680 1.26358 1.47424 0.86698 0.80215 0.83741 0.78851 1.19573 1.20184 1.19625 1.19324 0.97922 0.94405 0.94740 1.20946 0.98748 0.93842 0.96487 1.21120 0.98454 0.99877 0.94626 1.21119 0.98690 0.94887 0.99371 1.21043 1.00585 0.95039 0.97670 1.20997 0.97756 0.99759 0.94643 0.91049 0.91633 0.91104 0.76390 0.90743 0.91341 0.88459 0.90386 0.91362 0.89005 0.91900 0.90155 0.79871 0.91587 0.86227 0.86192 0.86362 0.86248 0.86236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 8.91 37.16 0.33 -1.36 16 2 C -0.07 -0.84 2.90 -92.92 -0.27 -1.11 16 3 H 0.10 0.96 7.88 -51.93 -0.41 0.55 16 4 C 0.52 6.99 7.02 -10.99 -0.08 6.91 16 5 O -0.54 -8.83 15.09 5.55 0.08 -8.75 16 6 N -0.72 -8.76 5.36 -60.29 -0.32 -9.09 16 7 C 0.14 1.61 5.81 -4.04 -0.02 1.59 16 8 C 0.00 0.04 3.23 -71.45 -0.23 -0.19 16 9 H 0.08 0.73 7.91 -51.93 -0.41 0.32 16 10 C -0.13 -1.25 8.00 -26.20 -0.21 -1.46 16 11 C 0.00 0.05 7.71 -7.56 -0.06 -0.01 16 12 N -0.43 -6.17 5.39 -237.98 -1.28 -7.45 16 13 C 0.00 0.05 5.05 -4.97 -0.03 0.03 16 14 C 0.45 9.75 7.85 -10.98 -0.09 9.66 16 15 O -0.55 -14.44 16.01 5.55 0.09 -14.35 16 16 N -0.59 -13.41 5.09 -10.96 -0.06 -13.47 16 17 C -0.30 -8.34 10.16 -14.93 -0.15 -8.49 16 18 H 0.12 3.77 7.39 -52.49 -0.39 3.38 16 19 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 20 N -0.88 -25.25 13.96 55.50 0.77 -24.47 16 21 Si 0.88 18.69 27.74 -169.99 -4.71 13.97 16 22 H -0.27 -5.61 7.11 56.52 0.40 -5.20 16 23 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 24 H -0.27 -5.20 6.52 56.52 0.37 -4.83 16 25 C -0.06 -0.77 4.40 -104.62 -0.46 -1.23 16 26 C -0.08 -1.04 7.92 -39.58 -0.31 -1.35 16 27 C -0.12 -1.37 10.05 -39.58 -0.40 -1.76 16 28 C -0.12 -1.24 10.05 -39.58 -0.40 -1.63 16 29 C -0.13 -1.25 10.05 -39.59 -0.40 -1.65 16 30 C -0.11 -1.23 9.67 -39.58 -0.38 -1.61 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.82 7.40 -51.93 -0.38 0.44 16 33 H 0.07 0.89 7.56 -51.93 -0.39 0.50 16 34 H 0.40 4.64 5.64 -40.82 -0.23 4.41 16 35 H 0.07 0.96 7.88 -51.92 -0.41 0.55 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.10 0.94 7.94 -51.93 -0.41 0.53 16 38 H 0.08 0.57 8.14 -51.92 -0.42 0.14 16 39 H 0.07 0.76 7.42 -51.93 -0.39 0.37 16 40 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.06 0.81 7.30 -51.93 -0.38 0.44 16 42 H 0.08 1.00 6.27 -51.93 -0.33 0.67 16 43 H 0.37 7.25 5.76 -40.82 -0.24 7.02 16 44 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 45 H 0.12 1.56 7.52 -52.49 -0.39 1.17 16 46 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 47 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 48 H 0.12 0.91 8.06 -52.48 -0.42 0.48 16 49 H 0.12 1.04 7.95 -52.48 -0.42 0.63 16 LS Contribution 400.49 15.07 6.04 6.04 Total: -1.00 -34.70 400.49 -9.94 -44.64 By element: Atomic # 1 Polarization: 22.88 SS G_CDS: -7.30 Total: 15.58 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: -3.25 Total: -2.65 kcal Atomic # 7 Polarization: -53.59 SS G_CDS: -0.89 Total: -54.48 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: 0.17 Total: -23.10 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -4.71 Total: 13.97 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.70 -9.94 -44.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569381299.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.574 kcal (2) G-P(sol) polarization free energy of solvation -34.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds