Wall clock time and date at job start Wed Apr 1 2020 03:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47065 * 2 1 4 4 C 1.50698 * 109.47207 * 120.00989 * 2 1 3 5 5 O 1.21283 * 120.00472 * 119.99880 * 4 2 1 6 6 N 1.34777 * 119.99538 * 299.99218 * 4 2 1 7 7 C 1.46499 * 119.99665 * 179.72653 * 6 4 2 8 8 C 1.53004 * 109.47198 * 180.27868 * 7 6 4 9 9 H 1.09003 * 112.74481 * 284.23070 * 8 7 6 10 10 C 1.53512 * 113.47592 * 153.37803 * 8 7 6 11 11 C 1.53507 * 83.57379 * 219.20843 * 10 8 7 12 12 N 1.47471 * 87.93235 * 26.02702 * 11 10 8 13 13 C 1.46903 * 111.00225 * 221.29118 * 12 11 10 14 14 C 1.50700 * 109.47278 * 265.97219 * 13 12 11 15 15 O 1.21285 * 120.00092 * 0.02562 * 14 13 12 16 16 N 1.34778 * 119.99726 * 179.97438 * 14 13 12 17 17 C 1.37102 * 119.99920 * 180.02562 * 16 14 13 18 18 H 1.08001 * 119.99537 * 0.02562 * 17 16 14 19 19 C 1.38947 * 120.00182 * 179.97438 * 17 16 14 20 20 N 1.31407 * 120.00367 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 119.99888 * 0.02562 * 19 17 16 22 22 H 1.48504 * 109.47401 * 89.99678 * 21 19 17 23 23 H 1.48503 * 109.47131 * 209.99761 * 21 19 17 24 24 H 1.48500 * 109.46818 * 329.99562 * 21 19 17 25 25 C 1.50698 * 109.46679 * 240.00551 * 2 1 3 26 26 C 1.38240 * 120.00131 * 299.72748 * 25 2 1 27 27 C 1.38238 * 119.99947 * 179.76792 * 26 25 2 28 28 C 1.38240 * 119.99850 * 0.48396 * 27 26 25 29 29 C 1.38234 * 119.99872 * 359.78894 * 28 27 26 30 30 C 1.38226 * 120.00346 * 359.96097 * 29 28 27 31 31 H 1.08995 * 109.47475 * 59.99036 * 1 2 3 32 32 H 1.09001 * 109.47406 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47038 * 299.99432 * 1 2 3 34 34 H 0.97001 * 120.00485 * 0.02562 * 6 4 2 35 35 H 1.09009 * 109.47454 * 300.27637 * 7 6 4 36 36 H 1.08998 * 109.47492 * 60.27932 * 7 6 4 37 37 H 1.08997 * 114.17267 * 332.85934 * 10 8 7 38 38 H 1.09008 * 114.16843 * 105.56620 * 10 8 7 39 39 H 1.08999 * 113.48178 * 271.25954 * 11 10 8 40 40 H 1.09007 * 113.52829 * 140.80512 * 11 10 8 41 41 H 1.09004 * 109.46820 * 25.97507 * 13 12 11 42 42 H 1.09000 * 109.47250 * 145.96967 * 13 12 11 43 43 H 0.97000 * 120.00194 * 0.02562 * 16 14 13 44 44 H 0.96993 * 120.00273 * 179.97438 * 20 19 17 45 45 H 1.07994 * 119.99915 * 0.02562 * 26 25 2 46 46 H 1.08001 * 120.00240 * 180.25014 * 27 26 25 47 47 H 1.07999 * 119.99390 * 179.76818 * 28 27 26 48 48 H 1.08003 * 119.99448 * 179.97438 * 29 28 27 49 49 H 1.08004 * 120.00377 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7106 1.2303 5 8 2.7296 -1.6967 1.1190 6 7 1.7068 -0.2502 2.4545 7 6 2.1902 -0.9445 3.6505 8 6 1.6757 -0.2266 4.8999 9 1 2.2140 0.6986 5.1061 10 6 1.5450 -1.1452 6.1228 11 6 0.2633 -0.3390 6.3757 12 7 0.2094 -0.0715 4.9264 13 6 -0.1777 1.3207 4.6621 14 6 -1.6682 1.3968 4.4536 15 8 -2.3419 0.3904 4.5192 16 7 -2.2528 2.5834 4.1952 17 6 -3.6089 2.6527 4.0060 18 1 -4.2088 1.7565 4.0644 19 6 -4.2117 3.8761 3.7401 20 7 -5.5114 3.9425 3.5582 21 14 -3.1742 5.4263 3.6397 22 1 -2.7189 5.6276 2.2406 23 1 -3.9855 6.5936 4.0690 24 1 -1.9933 5.2900 4.5298 25 6 2.0322 -0.7103 -1.2305 26 6 1.7029 -2.0354 -1.4466 27 6 2.1596 -2.6855 -2.5778 28 6 2.9540 -2.0135 -3.4880 29 6 3.2880 -0.6901 -3.2690 30 6 2.8270 -0.0385 -2.1405 31 1 -0.3634 0.5139 -0.8898 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3633 0.5137 0.8900 34 1 1.1490 0.5383 2.5436 35 1 1.8264 -1.9720 3.6462 36 1 3.2802 -0.9450 3.6548 37 1 1.3721 -2.1930 5.8775 38 1 2.3198 -0.9993 6.8755 39 1 0.4246 0.5558 6.9767 40 1 -0.5678 -0.9450 6.7367 41 1 0.1026 1.9433 5.5118 42 1 0.3330 1.6762 3.7671 43 1 -1.7141 3.3884 4.1430 44 1 -5.9322 4.7966 3.3730 45 1 1.0853 -2.5614 -0.7337 46 1 1.8990 -3.7196 -2.7487 47 1 3.3139 -2.5226 -4.3698 48 1 3.9089 -0.1652 -3.9799 49 1 3.0876 0.9956 -1.9697 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569381299.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:04 Heat of formation + Delta-G solvation = -30.367418 kcal Electronic energy + Delta-G solvation = -30215.384894 eV Core-core repulsion = 26142.532763 eV Total energy + Delta-G solvation = -4072.852132 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.73492 -41.05803 -39.79764 -39.44383 -35.97874 -35.59900 -35.13740 -33.75352 -32.17395 -31.77684 -30.56859 -29.12231 -27.62062 -25.77351 -25.18012 -24.17979 -23.46311 -22.59297 -21.29174 -21.12698 -20.48281 -20.27117 -18.28962 -17.87985 -17.66388 -17.26529 -16.92505 -16.67339 -16.51571 -16.28119 -15.93196 -15.67357 -15.36611 -15.20396 -14.91287 -14.72297 -14.53823 -14.37572 -14.18983 -14.14960 -14.00302 -13.73913 -13.23981 -13.13666 -13.02230 -12.91760 -12.62682 -12.57161 -12.40039 -12.34263 -12.01909 -11.93856 -11.87774 -11.82427 -11.59685 -11.47849 -10.78876 -10.44692 -10.22517 -10.06224 -9.76690 -9.72162 -9.61820 -8.39178 -6.00221 0.43801 0.54572 1.30638 1.37081 1.45793 1.60641 1.97982 2.16348 2.24671 2.65330 2.93991 3.15515 3.24730 3.52840 3.55349 3.72882 3.79459 3.94950 4.08847 4.11387 4.12858 4.21119 4.24189 4.26770 4.31742 4.32471 4.39534 4.40356 4.60435 4.64412 4.66527 4.75574 4.83142 4.85580 4.90653 5.01018 5.10340 5.17396 5.18477 5.21618 5.31944 5.50795 5.55711 5.58371 5.64111 5.70947 5.94353 6.07935 6.13819 6.49424 6.62034 6.91406 7.20986 7.42508 8.01263 8.78760 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009073 B = 0.003086 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3085.332625 B = 9071.497401 C =11271.646362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.066 4.066 3 H 0.130 0.870 4 C 0.516 3.484 5 O -0.572 6.572 6 N -0.715 5.715 7 C 0.140 3.860 8 C 0.018 3.982 9 H 0.116 0.884 10 C -0.116 4.116 11 C -0.004 4.004 12 N -0.473 5.473 13 C 0.016 3.984 14 C 0.454 3.546 15 O -0.609 6.609 16 N -0.592 5.592 17 C -0.325 4.325 18 H 0.051 0.949 19 C -0.016 4.016 20 N -0.937 5.937 21 Si 0.964 3.036 22 H -0.254 1.254 23 H -0.279 1.279 24 H -0.228 1.228 25 C -0.081 4.081 26 C -0.107 4.107 27 C -0.136 4.136 28 C -0.126 4.126 29 C -0.128 4.128 30 C -0.120 4.120 31 H 0.081 0.919 32 H 0.046 0.954 33 H 0.062 0.938 34 H 0.404 0.596 35 H 0.051 0.949 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.112 0.888 39 H 0.089 0.911 40 H 0.060 0.940 41 H 0.098 0.902 42 H 0.113 0.887 43 H 0.389 0.611 44 H 0.278 0.722 45 H 0.100 0.900 46 H 0.131 0.869 47 H 0.144 0.856 48 H 0.148 0.852 49 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.562 -2.236 -5.608 25.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.087 4.087 3 H 0.148 0.852 4 C 0.303 3.697 5 O -0.451 6.451 6 N -0.367 5.367 7 C 0.016 3.984 8 C -0.091 4.091 9 H 0.134 0.866 10 C -0.154 4.154 11 C -0.133 4.133 12 N -0.196 5.196 13 C -0.116 4.116 14 C 0.241 3.759 15 O -0.492 6.492 16 N -0.234 5.234 17 C -0.454 4.454 18 H 0.069 0.931 19 C -0.215 4.215 20 N -0.578 5.578 21 Si 0.784 3.216 22 H -0.179 1.179 23 H -0.204 1.204 24 H -0.152 1.152 25 C -0.081 4.081 26 C -0.126 4.126 27 C -0.154 4.154 28 C -0.144 4.144 29 C -0.145 4.145 30 C -0.138 4.138 31 H 0.100 0.900 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.241 0.759 35 H 0.069 0.931 36 H 0.101 0.899 37 H 0.106 0.894 38 H 0.130 0.870 39 H 0.107 0.893 40 H 0.079 0.921 41 H 0.115 0.885 42 H 0.131 0.869 43 H 0.225 0.775 44 H 0.088 0.912 45 H 0.118 0.882 46 H 0.149 0.851 47 H 0.161 0.839 48 H 0.165 0.835 49 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 23.971 -3.883 -6.111 25.040 hybrid contribution -0.648 1.473 0.540 1.697 sum 23.323 -2.410 -5.571 24.100 Atomic orbital electron populations 1.21754 0.91869 1.02349 1.03558 1.20325 0.97451 1.01160 0.89788 0.85175 1.20813 0.79471 0.84186 0.85263 1.90681 1.39631 1.27564 1.87235 1.45936 1.53203 1.32180 1.05348 1.21362 0.98892 0.95713 0.82407 1.23849 0.89487 1.00682 0.95113 0.86650 1.23095 0.97040 0.98779 0.96503 1.23866 0.99020 1.00781 0.89612 1.68808 1.13062 1.20631 1.17142 1.22563 0.91666 0.92946 1.04416 1.20841 0.90981 0.82798 0.81272 1.90565 1.66611 1.36534 1.55482 1.42032 1.06924 1.08733 1.65751 1.18951 0.83019 0.95779 1.47680 0.93055 1.26124 0.97152 1.02081 0.96095 1.69810 1.11500 1.27890 1.48621 0.85382 0.79160 0.76657 0.80407 1.17865 1.20432 1.15159 1.19482 0.98800 0.94360 0.95460 1.20981 0.99784 0.94683 0.97123 1.21358 0.98824 1.00669 0.94567 1.21469 0.97912 0.95268 0.99757 1.21449 1.00208 0.95079 0.97793 1.21322 0.97142 1.00883 0.94473 0.90036 0.93486 0.91907 0.75919 0.93080 0.89905 0.89426 0.86961 0.89309 0.92090 0.88455 0.86890 0.77509 0.91240 0.88195 0.85125 0.83857 0.83456 0.83941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 8.91 71.98 0.64 -2.65 16 2 C -0.07 -1.46 2.90 -12.29 -0.04 -1.50 16 3 H 0.13 2.09 7.88 -2.39 -0.02 2.07 16 4 C 0.52 13.62 7.02 87.66 0.62 14.24 16 5 O -0.57 -19.02 15.09 -3.04 -0.05 -19.06 16 6 N -0.72 -16.31 5.36 -463.05 -2.48 -18.79 16 7 C 0.14 2.95 5.81 86.38 0.50 3.45 16 8 C 0.02 0.32 3.23 42.18 0.14 0.45 16 9 H 0.12 1.36 7.91 -2.39 -0.02 1.34 16 10 C -0.12 -1.88 8.00 30.94 0.25 -1.64 16 11 C 0.00 -0.09 7.71 83.57 0.64 0.55 16 12 N -0.47 -12.70 5.39 -906.85 -4.89 -17.59 16 13 C 0.02 0.43 5.05 85.56 0.43 0.86 16 14 C 0.45 19.45 7.85 87.66 0.69 20.14 16 15 O -0.61 -33.41 16.01 -3.04 -0.05 -33.46 16 16 N -0.59 -26.49 5.09 -306.99 -1.56 -28.05 16 17 C -0.32 -18.58 10.16 84.04 0.85 -17.73 16 18 H 0.05 3.55 7.39 -2.91 -0.02 3.53 16 19 C -0.02 -0.88 5.50 84.93 0.47 -0.41 16 20 N -0.94 -55.92 13.96 21.66 0.30 -55.62 16 21 Si 0.96 37.15 27.74 68.60 1.90 39.06 16 22 H -0.25 -9.18 7.11 99.48 0.71 -8.47 16 23 H -0.28 -10.86 7.11 99.48 0.71 -10.15 16 24 H -0.23 -7.19 6.52 99.48 0.65 -6.54 16 25 C -0.08 -1.92 4.40 -19.86 -0.09 -2.01 16 26 C -0.11 -2.82 7.92 22.27 0.18 -2.64 16 27 C -0.14 -3.03 10.05 22.27 0.22 -2.81 16 28 C -0.13 -2.33 10.05 22.27 0.22 -2.11 16 29 C -0.13 -2.23 10.05 22.27 0.22 -2.01 16 30 C -0.12 -2.35 9.67 22.27 0.22 -2.13 16 31 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.05 1.27 7.40 -2.39 -0.02 1.25 16 33 H 0.06 1.57 7.56 -2.39 -0.02 1.55 16 34 H 0.40 8.43 5.64 -92.71 -0.52 7.91 16 35 H 0.05 1.32 7.88 -2.38 -0.02 1.30 16 36 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.09 1.60 7.94 -2.39 -0.02 1.58 16 38 H 0.11 1.12 8.14 -2.38 -0.02 1.10 16 39 H 0.09 1.66 7.42 -2.39 -0.02 1.64 16 40 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 41 H 0.10 2.01 7.30 -2.39 -0.02 2.00 16 42 H 0.11 2.30 6.27 -2.39 -0.01 2.29 16 43 H 0.39 14.05 5.76 -92.71 -0.53 13.52 16 44 H 0.28 15.17 8.31 -92.71 -0.77 14.40 16 45 H 0.10 2.88 7.52 -2.91 -0.02 2.86 16 46 H 0.13 2.44 8.06 -2.91 -0.02 2.41 16 47 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 48 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 49 H 0.14 2.02 7.95 -2.91 -0.02 2.00 16 Total: -1.00 -84.60 400.49 -0.79 -85.39 By element: Atomic # 1 Polarization: 46.19 SS G_CDS: -0.14 Total: 46.05 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: 6.17 Total: 2.07 kcal Atomic # 7 Polarization: -111.42 SS G_CDS: -8.63 Total: -120.05 kcal Atomic # 8 Polarization: -52.42 SS G_CDS: -0.09 Total: -52.52 kcal Atomic # 14 Polarization: 37.15 SS G_CDS: 1.90 Total: 39.06 kcal Total: -84.60 -0.79 -85.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569381299.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.024 kcal (2) G-P(sol) polarization free energy of solvation -84.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds