Wall clock time and date at job start Wed Apr 1 2020 04:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35649 * 116.99814 * 2 1 4 4 C 1.46380 * 126.59741 * 270.19230 * 3 2 1 5 5 C 1.39849 * 133.59499 * 359.97438 * 4 3 2 6 6 C 1.36532 * 119.79100 * 180.29212 * 5 4 3 7 7 C 1.38904 * 120.53717 * 0.02562 * 6 5 4 8 8 C 1.37664 * 120.69167 * 359.95367 * 7 6 5 9 9 C 1.39292 * 119.83132 * 0.04726 * 8 7 6 10 10 N 1.37498 * 133.00075 * 180.02562 * 9 8 7 11 11 H 0.96996 * 125.11661 * 0.02562 * 10 9 8 12 12 C 1.36687 * 126.58758 * 90.02564 * 3 2 1 13 13 C 1.46307 * 125.42542 * 359.97438 * 12 3 2 14 14 O 1.21740 * 119.99448 * 359.71918 * 13 12 3 15 15 N 1.34770 * 120.00304 * 179.72344 * 13 12 3 16 16 C 1.46500 * 119.99955 * 180.02562 * 15 13 12 17 17 H 1.09000 * 109.47175 * 324.99716 * 16 15 13 18 18 C 1.53006 * 109.46998 * 84.99585 * 16 15 13 19 19 C 1.52997 * 109.47204 * 204.99611 * 16 15 13 20 20 C 1.52996 * 109.46894 * 64.99698 * 19 16 15 21 21 C 1.53008 * 109.47120 * 180.02562 * 20 19 16 22 22 N 1.46496 * 109.47324 * 180.02562 * 21 20 19 23 23 C 1.36942 * 120.00234 * 179.97438 * 22 21 20 24 24 H 1.07998 * 119.99649 * 359.97438 * 23 22 21 25 25 C 1.38810 * 119.99900 * 179.97438 * 23 22 21 26 26 N 1.31619 * 120.00114 * 359.97438 * 25 23 22 27 27 Si 1.86798 * 119.99565 * 180.02562 * 25 23 22 28 28 H 1.48498 * 109.47286 * 90.00349 * 27 25 23 29 29 H 1.48508 * 109.47039 * 209.99886 * 27 25 23 30 30 H 1.48497 * 109.47132 * 329.99793 * 27 25 23 31 31 H 1.08996 * 109.47276 * 59.99997 * 1 2 3 32 32 H 1.09000 * 109.46877 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47173 * 299.99497 * 1 2 3 34 34 H 1.07996 * 120.10471 * 0.31016 * 5 4 3 35 35 H 1.08001 * 119.72671 * 179.97438 * 6 5 4 36 36 H 1.07999 * 119.65154 * 179.97438 * 7 6 5 37 37 H 1.08008 * 120.08497 * 180.02562 * 8 7 6 38 38 H 0.96997 * 119.99935 * 359.97438 * 15 13 12 39 39 H 1.09001 * 109.47002 * 179.97438 * 18 16 15 40 40 H 1.08993 * 109.46955 * 300.00226 * 18 16 15 41 41 H 1.09000 * 109.47050 * 60.00054 * 18 16 15 42 42 H 1.08994 * 109.47510 * 185.00146 * 19 16 15 43 43 H 1.09001 * 109.47096 * 305.00009 * 19 16 15 44 44 H 1.08998 * 109.47867 * 299.99927 * 20 19 16 45 45 H 1.08993 * 109.47122 * 60.00537 * 20 19 16 46 46 H 1.09003 * 109.46865 * 299.99902 * 21 20 19 47 47 H 1.09001 * 109.47171 * 60.00127 * 21 20 19 48 48 H 0.97004 * 119.99896 * 359.97438 * 22 21 20 49 49 H 0.97005 * 119.99557 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 2.4375 1.9880 -1.1752 5 6 2.3256 1.7777 -2.5532 6 6 2.8058 2.7137 -3.4235 7 6 3.4057 3.8742 -2.9515 8 6 3.5265 4.1029 -1.5994 9 6 3.0442 3.1627 -0.6918 10 7 3.0205 3.1118 0.6820 11 1 3.3734 3.7961 1.2719 12 6 2.4151 1.9344 1.0975 13 6 2.2101 1.5318 2.4891 14 8 1.6646 0.4733 2.7424 15 7 2.6250 2.3326 3.4905 16 6 2.4202 1.9292 4.8838 17 1 1.4782 1.3877 4.9706 18 6 3.5714 1.0241 5.3272 19 6 2.3773 3.1729 5.7739 20 6 1.1532 4.0166 5.4126 21 6 1.1107 5.2607 6.3023 22 7 -0.0617 6.0683 5.9568 23 6 -0.3094 7.2371 6.6260 24 1 0.3594 7.5633 7.4087 25 6 -1.4200 8.0026 6.2982 26 7 -2.2348 7.6052 5.3439 27 14 -1.7574 9.5973 7.2105 28 1 -1.0856 10.7206 6.5090 29 1 -3.2212 9.8440 7.2515 30 1 -1.2337 9.4951 8.5963 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5137 0.8900 34 1 1.8606 0.8778 -2.9279 35 1 2.7193 2.5500 -4.4875 36 1 3.7810 4.6049 -3.6527 37 1 3.9943 5.0089 -1.2432 38 1 3.0599 3.1758 3.2886 39 1 3.4192 0.7243 6.3641 40 1 3.6019 0.1381 4.6931 41 1 4.5134 1.5656 5.2404 42 1 2.3142 2.8698 6.8190 43 1 3.2821 3.7610 5.6202 44 1 1.2164 4.3198 4.3676 45 1 0.2485 3.4285 5.5663 46 1 1.0477 4.9579 7.3475 47 1 2.0155 5.8487 6.1482 48 1 -0.6626 5.7751 5.2540 49 1 -3.0111 8.1400 5.1152 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649469961.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:20 Heat of formation + Delta-G solvation = -14.138121 kcal Electronic energy + Delta-G solvation = -29653.522018 eV Core-core repulsion = 25581.373642 eV Total energy + Delta-G solvation = -4072.148376 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.74069 -39.72748 -38.18361 -37.02297 -36.69521 -34.89385 -32.69555 -31.84573 -31.35681 -29.74656 -29.35837 -29.07156 -26.90814 -25.75776 -24.47616 -22.99929 -22.41342 -21.64604 -20.92657 -20.79362 -20.35610 -18.73380 -17.55368 -17.05582 -16.81089 -16.47271 -16.12272 -15.76494 -15.13501 -14.99938 -14.71439 -14.64953 -14.49368 -14.23341 -14.18310 -14.01513 -13.76724 -13.51645 -13.31102 -13.01961 -12.75697 -12.28702 -12.17195 -12.10828 -11.95662 -11.84067 -11.36746 -11.32930 -11.22753 -10.89712 -10.85075 -10.54349 -10.47122 -10.32853 -10.05053 -9.95556 -9.89221 -9.72176 -9.27280 -8.89791 -8.58373 -7.97354 -6.94835 -5.78834 -3.07881 0.45506 1.28247 1.66848 2.50804 2.89491 3.03936 3.41129 3.46117 3.48223 3.50789 3.76419 4.30425 4.44300 4.53863 4.70070 4.74595 4.88294 4.95380 4.99418 5.07268 5.16132 5.19303 5.24366 5.32789 5.36320 5.39401 5.48862 5.54522 5.57434 5.60783 5.70818 5.72156 5.87338 5.97211 6.01675 6.03867 6.12261 6.14286 6.18886 6.29966 6.30572 6.35255 6.36222 6.70669 6.80965 6.84399 7.00235 7.28417 7.41983 7.66993 7.96611 8.40083 9.50879 10.09462 10.43639 11.44070 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009333 B = 0.002502 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2999.533652 B =11186.344110 C =12799.047514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.298 6.298 3 C 0.101 3.899 4 C -0.137 4.137 5 C -0.052 4.052 6 C -0.152 4.152 7 C -0.083 4.083 8 C -0.135 4.135 9 C 0.132 3.868 10 N -0.577 5.577 11 H 0.421 0.579 12 C 0.004 3.996 13 C 0.583 3.417 14 O -0.511 6.511 15 N -0.718 5.718 16 C 0.143 3.857 17 H 0.092 0.908 18 C -0.163 4.163 19 C -0.123 4.123 20 C -0.126 4.126 21 C 0.153 3.847 22 N -0.735 5.735 23 C -0.241 4.241 24 H 0.070 0.930 25 C -0.015 4.015 26 N -0.934 5.934 27 Si 0.908 3.092 28 H -0.290 1.290 29 H -0.291 1.291 30 H -0.282 1.282 31 H 0.043 0.957 32 H 0.095 0.905 33 H 0.051 0.949 34 H 0.125 0.875 35 H 0.125 0.875 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.395 0.605 39 H 0.068 0.932 40 H 0.060 0.940 41 H 0.055 0.945 42 H 0.082 0.918 43 H 0.067 0.933 44 H 0.058 0.942 45 H 0.063 0.937 46 H 0.018 0.982 47 H 0.016 0.984 48 H 0.383 0.617 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.328 -13.753 -15.046 24.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.212 6.212 3 C 0.047 3.953 4 C -0.142 4.142 5 C -0.071 4.071 6 C -0.171 4.171 7 C -0.102 4.102 8 C -0.156 4.156 9 C 0.023 3.977 10 N -0.185 5.185 11 H 0.260 0.740 12 C -0.105 4.105 13 C 0.369 3.631 14 O -0.386 6.386 15 N -0.370 5.370 16 C 0.039 3.961 17 H 0.110 0.890 18 C -0.221 4.221 19 C -0.162 4.162 20 C -0.164 4.164 21 C 0.025 3.975 22 N -0.379 5.379 23 C -0.372 4.372 24 H 0.088 0.912 25 C -0.211 4.211 26 N -0.582 5.582 27 Si 0.739 3.261 28 H -0.217 1.217 29 H -0.217 1.217 30 H -0.207 1.207 31 H 0.062 0.938 32 H 0.113 0.887 33 H 0.069 0.931 34 H 0.143 0.857 35 H 0.143 0.857 36 H 0.147 0.853 37 H 0.145 0.855 38 H 0.229 0.771 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.100 0.900 43 H 0.086 0.914 44 H 0.077 0.923 45 H 0.082 0.918 46 H 0.036 0.964 47 H 0.034 0.966 48 H 0.216 0.784 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 14.024 -14.542 -14.547 24.895 hybrid contribution -0.200 1.882 0.449 1.945 sum 13.824 -12.661 -14.098 23.455 Atomic orbital electron populations 1.23013 0.78550 1.03271 1.00718 1.85957 1.20034 1.21795 1.93409 1.18613 1.00339 0.87357 0.88972 1.19356 1.06225 0.95015 0.93570 1.20341 0.97441 0.98937 0.90393 1.20673 1.01839 0.94891 0.99696 1.20914 0.97810 0.97255 0.94235 1.20140 1.04619 0.98756 0.92064 1.18128 1.00472 0.96343 0.82774 1.41755 1.53272 1.18218 1.05289 0.74020 1.20407 1.07099 0.89114 0.93859 1.16914 0.79063 0.84355 0.82782 1.90893 1.42107 1.22325 1.83278 1.45996 1.61468 1.23032 1.06484 1.21107 0.99859 0.95994 0.79158 0.88950 1.22180 0.98155 0.99917 1.01851 1.21864 0.99402 0.95106 0.99790 1.21738 0.97237 0.97072 1.00319 1.20645 0.90950 0.90155 0.95706 1.42383 1.27135 1.24158 1.44199 1.19236 1.06725 0.97658 1.13565 0.91214 1.24759 0.97805 0.99320 0.99200 1.69666 1.16193 1.39561 1.32798 0.86182 0.77188 0.83622 0.79158 1.21716 1.21714 1.20744 0.93783 0.88709 0.93057 0.85680 0.85675 0.85343 0.85520 0.77111 0.91307 0.92117 0.92543 0.89982 0.91441 0.92294 0.91824 0.96430 0.96636 0.78356 0.93495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 11.13 101.05 1.12 1.56 16 2 O -0.30 -4.14 9.74 -30.75 -0.30 -4.44 16 3 C 0.10 1.37 6.47 -36.87 -0.24 1.13 16 4 C -0.14 -1.63 6.35 -105.06 -0.67 -2.30 16 5 C -0.05 -0.52 10.06 -39.59 -0.40 -0.92 16 6 C -0.15 -1.24 9.97 -39.95 -0.40 -1.64 16 7 C -0.08 -0.64 10.01 -39.54 -0.40 -1.04 16 8 C -0.14 -1.18 10.08 -39.40 -0.40 -1.57 16 9 C 0.13 1.42 7.25 -83.98 -0.61 0.81 16 10 N -0.58 -5.77 6.04 -7.24 -0.04 -5.82 16 11 H 0.42 3.01 8.08 -40.82 -0.33 2.69 16 12 C 0.00 0.05 6.98 -82.04 -0.57 -0.52 16 13 C 0.58 7.84 7.74 -13.02 -0.10 7.74 16 14 O -0.51 -8.42 15.85 -6.95 -0.11 -8.53 16 15 N -0.72 -7.82 4.52 -55.23 -0.25 -8.07 16 16 C 0.14 1.58 2.57 -67.93 -0.17 1.41 16 17 H 0.09 1.20 7.58 -51.93 -0.39 0.81 16 18 C -0.16 -1.58 9.48 37.16 0.35 -1.22 16 19 C -0.12 -1.38 4.75 -26.73 -0.13 -1.51 16 20 C -0.13 -1.93 5.22 -26.73 -0.14 -2.07 16 21 C 0.15 3.01 6.26 -4.04 -0.03 2.99 16 22 N -0.73 -18.82 5.60 -59.90 -0.34 -19.16 16 23 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 24 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 25 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 26 N -0.93 -28.51 13.06 55.49 0.72 -27.79 16 27 Si 0.91 22.47 29.55 -169.99 -5.02 17.45 16 28 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 29 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 30 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 31 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 35 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 36 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 37 H 0.13 0.84 8.06 -52.48 -0.42 0.41 16 38 H 0.39 3.43 7.62 -40.82 -0.31 3.12 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 43 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.06 0.91 7.75 -51.93 -0.40 0.51 16 45 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 48 H 0.38 10.37 7.67 -40.82 -0.31 10.06 16 49 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 412.12 15.07 6.21 6.21 Total: -1.00 -35.20 412.12 -9.78 -44.98 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -7.64 Total: 9.81 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: -3.01 Total: -4.65 kcal Atomic # 7 Polarization: -60.93 SS G_CDS: 0.10 Total: -60.83 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: -0.41 Total: -12.96 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -35.20 -9.78 -44.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649469961.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.845 kcal (2) G-P(sol) polarization free energy of solvation -35.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds