Wall clock time and date at job start Wed Apr 1 2020 04:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35649 * 116.99814 * 2 1 4 4 C 1.46380 * 126.59741 * 270.19230 * 3 2 1 5 5 C 1.39849 * 133.59499 * 359.97438 * 4 3 2 6 6 C 1.36532 * 119.79100 * 180.29212 * 5 4 3 7 7 C 1.38904 * 120.53717 * 0.02562 * 6 5 4 8 8 C 1.37664 * 120.69167 * 359.95367 * 7 6 5 9 9 C 1.39292 * 119.83132 * 0.04726 * 8 7 6 10 10 N 1.37498 * 133.00075 * 180.02562 * 9 8 7 11 11 H 0.96996 * 125.11661 * 0.02562 * 10 9 8 12 12 C 1.36687 * 126.58758 * 90.02564 * 3 2 1 13 13 C 1.46307 * 125.42542 * 359.97438 * 12 3 2 14 14 O 1.21740 * 119.99448 * 359.71918 * 13 12 3 15 15 N 1.34770 * 120.00304 * 179.72344 * 13 12 3 16 16 C 1.46500 * 119.99955 * 180.02562 * 15 13 12 17 17 H 1.09000 * 109.47175 * 324.99716 * 16 15 13 18 18 C 1.53006 * 109.46998 * 84.99585 * 16 15 13 19 19 C 1.52997 * 109.47204 * 204.99611 * 16 15 13 20 20 C 1.52996 * 109.46894 * 64.99698 * 19 16 15 21 21 C 1.53008 * 109.47120 * 180.02562 * 20 19 16 22 22 N 1.46496 * 109.47324 * 180.02562 * 21 20 19 23 23 C 1.36942 * 120.00234 * 179.97438 * 22 21 20 24 24 H 1.07998 * 119.99649 * 359.97438 * 23 22 21 25 25 C 1.38810 * 119.99900 * 179.97438 * 23 22 21 26 26 N 1.31619 * 120.00114 * 359.97438 * 25 23 22 27 27 Si 1.86798 * 119.99565 * 180.02562 * 25 23 22 28 28 H 1.48498 * 109.47286 * 90.00349 * 27 25 23 29 29 H 1.48508 * 109.47039 * 209.99886 * 27 25 23 30 30 H 1.48497 * 109.47132 * 329.99793 * 27 25 23 31 31 H 1.08996 * 109.47276 * 59.99997 * 1 2 3 32 32 H 1.09000 * 109.46877 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47173 * 299.99497 * 1 2 3 34 34 H 1.07996 * 120.10471 * 0.31016 * 5 4 3 35 35 H 1.08001 * 119.72671 * 179.97438 * 6 5 4 36 36 H 1.07999 * 119.65154 * 179.97438 * 7 6 5 37 37 H 1.08008 * 120.08497 * 180.02562 * 8 7 6 38 38 H 0.96997 * 119.99935 * 359.97438 * 15 13 12 39 39 H 1.09001 * 109.47002 * 179.97438 * 18 16 15 40 40 H 1.08993 * 109.46955 * 300.00226 * 18 16 15 41 41 H 1.09000 * 109.47050 * 60.00054 * 18 16 15 42 42 H 1.08994 * 109.47510 * 185.00146 * 19 16 15 43 43 H 1.09001 * 109.47096 * 305.00009 * 19 16 15 44 44 H 1.08998 * 109.47867 * 299.99927 * 20 19 16 45 45 H 1.08993 * 109.47122 * 60.00537 * 20 19 16 46 46 H 1.09003 * 109.46865 * 299.99902 * 21 20 19 47 47 H 1.09001 * 109.47171 * 60.00127 * 21 20 19 48 48 H 0.97004 * 119.99896 * 359.97438 * 22 21 20 49 49 H 0.97005 * 119.99557 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 2.4375 1.9880 -1.1752 5 6 2.3256 1.7777 -2.5532 6 6 2.8058 2.7137 -3.4235 7 6 3.4057 3.8742 -2.9515 8 6 3.5265 4.1029 -1.5994 9 6 3.0442 3.1627 -0.6918 10 7 3.0205 3.1118 0.6820 11 1 3.3734 3.7961 1.2719 12 6 2.4151 1.9344 1.0975 13 6 2.2101 1.5318 2.4891 14 8 1.6646 0.4733 2.7424 15 7 2.6250 2.3326 3.4905 16 6 2.4202 1.9292 4.8838 17 1 1.4782 1.3877 4.9706 18 6 3.5714 1.0241 5.3272 19 6 2.3773 3.1729 5.7739 20 6 1.1532 4.0166 5.4126 21 6 1.1107 5.2607 6.3023 22 7 -0.0617 6.0683 5.9568 23 6 -0.3094 7.2371 6.6260 24 1 0.3594 7.5633 7.4087 25 6 -1.4200 8.0026 6.2982 26 7 -2.2348 7.6052 5.3439 27 14 -1.7574 9.5973 7.2105 28 1 -1.0856 10.7206 6.5090 29 1 -3.2212 9.8440 7.2515 30 1 -1.2337 9.4951 8.5963 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5137 0.8900 34 1 1.8606 0.8778 -2.9279 35 1 2.7193 2.5500 -4.4875 36 1 3.7810 4.6049 -3.6527 37 1 3.9943 5.0089 -1.2432 38 1 3.0599 3.1758 3.2886 39 1 3.4192 0.7243 6.3641 40 1 3.6019 0.1381 4.6931 41 1 4.5134 1.5656 5.2404 42 1 2.3142 2.8698 6.8190 43 1 3.2821 3.7610 5.6202 44 1 1.2164 4.3198 4.3676 45 1 0.2485 3.4285 5.5663 46 1 1.0477 4.9579 7.3475 47 1 2.0155 5.8487 6.1482 48 1 -0.6626 5.7751 5.2540 49 1 -3.0111 8.1400 5.1152 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649469961.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:19 Heat of formation + Delta-G solvation = -37.067685 kcal Electronic energy + Delta-G solvation = -29654.516319 eV Core-core repulsion = 25581.373642 eV Total energy + Delta-G solvation = -4073.142677 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.57253 -40.70198 -39.10888 -38.00911 -37.65002 -36.54815 -34.24905 -32.75528 -32.59408 -31.08518 -30.25742 -29.91380 -27.81485 -27.26791 -25.47366 -24.63465 -23.16113 -22.62443 -22.28197 -21.76614 -21.31079 -19.59100 -19.13844 -18.36420 -17.62675 -17.42808 -17.05492 -16.72441 -16.65696 -16.02438 -15.99766 -15.69379 -15.49265 -15.39948 -15.23610 -15.02556 -14.89754 -14.82466 -14.49310 -14.07088 -13.89523 -13.48239 -13.22375 -13.05410 -12.82435 -12.79016 -12.73248 -12.60072 -12.42619 -12.27954 -12.11144 -12.00801 -11.89865 -11.77058 -11.54393 -11.38134 -10.95458 -10.91693 -10.68508 -10.26017 -9.34859 -9.03082 -8.76233 -7.97913 -5.27487 -0.38295 0.57072 0.84491 1.45587 1.47604 1.56242 1.67851 1.98930 2.05549 2.53941 2.74654 2.93762 3.35942 3.47322 3.61325 3.69431 3.93039 4.05939 4.10943 4.18155 4.20685 4.25099 4.36434 4.38462 4.43304 4.48948 4.52486 4.54747 4.62286 4.65546 4.73711 4.79108 4.82689 4.86819 4.96221 5.06945 5.07846 5.20443 5.28438 5.29041 5.37975 5.39594 5.47829 5.48840 5.52102 5.63505 6.02685 6.24463 6.26667 6.41357 6.49462 6.98769 7.29990 8.07014 8.28735 9.25825 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009333 B = 0.002502 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2999.533652 B =11186.344110 C =12799.047514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.318 6.318 3 C 0.077 3.923 4 C -0.162 4.162 5 C -0.070 4.070 6 C -0.147 4.147 7 C -0.078 4.078 8 C -0.141 4.141 9 C 0.121 3.879 10 N -0.566 5.566 11 H 0.433 0.567 12 C -0.010 4.010 13 C 0.581 3.419 14 O -0.550 6.550 15 N -0.706 5.706 16 C 0.145 3.855 17 H 0.069 0.931 18 C -0.155 4.155 19 C -0.109 4.109 20 C -0.113 4.113 21 C 0.150 3.850 22 N -0.751 5.751 23 C -0.247 4.247 24 H 0.078 0.922 25 C -0.079 4.079 26 N -0.972 5.972 27 Si 0.976 3.024 28 H -0.284 1.284 29 H -0.296 1.296 30 H -0.268 1.268 31 H 0.056 0.944 32 H 0.114 0.886 33 H 0.031 0.969 34 H 0.131 0.869 35 H 0.152 0.848 36 H 0.161 0.839 37 H 0.150 0.850 38 H 0.407 0.593 39 H 0.082 0.918 40 H 0.042 0.958 41 H 0.073 0.927 42 H 0.095 0.905 43 H 0.090 0.910 44 H 0.055 0.945 45 H 0.046 0.954 46 H 0.020 0.980 47 H 0.027 0.973 48 H 0.371 0.629 49 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.410 -12.338 -15.409 25.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.232 6.232 3 C 0.023 3.977 4 C -0.167 4.167 5 C -0.089 4.089 6 C -0.165 4.165 7 C -0.098 4.098 8 C -0.161 4.161 9 C 0.011 3.989 10 N -0.175 5.175 11 H 0.274 0.726 12 C -0.120 4.120 13 C 0.368 3.632 14 O -0.428 6.428 15 N -0.358 5.358 16 C 0.041 3.959 17 H 0.087 0.913 18 C -0.213 4.213 19 C -0.147 4.147 20 C -0.151 4.151 21 C 0.024 3.976 22 N -0.394 5.394 23 C -0.379 4.379 24 H 0.096 0.904 25 C -0.271 4.271 26 N -0.622 5.622 27 Si 0.804 3.196 28 H -0.211 1.211 29 H -0.223 1.223 30 H -0.193 1.193 31 H 0.075 0.925 32 H 0.132 0.868 33 H 0.049 0.951 34 H 0.149 0.851 35 H 0.170 0.830 36 H 0.178 0.822 37 H 0.167 0.833 38 H 0.244 0.756 39 H 0.101 0.899 40 H 0.061 0.939 41 H 0.092 0.908 42 H 0.113 0.887 43 H 0.109 0.891 44 H 0.074 0.926 45 H 0.064 0.936 46 H 0.038 0.962 47 H 0.045 0.955 48 H 0.202 0.798 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 16.176 -13.101 -14.875 25.585 hybrid contribution -0.799 1.431 0.489 1.710 sum 15.377 -11.669 -14.387 24.075 Atomic orbital electron populations 1.23099 0.77674 1.04424 1.00288 1.85896 1.21080 1.22664 1.93606 1.19006 1.00950 0.87570 0.90196 1.19569 1.07410 0.95534 0.94145 1.20564 0.98338 1.00016 0.89943 1.21053 1.00362 0.94299 1.00832 1.21372 0.96476 0.97493 0.94424 1.20506 1.04359 0.99049 0.92220 1.18453 1.00742 0.96642 0.83030 1.41640 1.52755 1.17623 1.05484 0.72612 1.20286 1.08165 0.90244 0.93299 1.17074 0.78600 0.84059 0.83487 1.90861 1.44011 1.24037 1.83894 1.45918 1.60661 1.23111 1.06112 1.21066 0.99671 0.96081 0.79099 0.91278 1.22106 0.98066 0.98917 1.02219 1.21764 0.98088 0.94456 1.00381 1.21599 0.98646 0.95633 0.99266 1.20860 0.89080 0.91115 0.96545 1.42662 1.28642 1.24307 1.43744 1.19673 1.06528 0.98338 1.13322 0.90447 1.25629 0.98006 1.02951 1.00477 1.69832 1.16756 1.40977 1.34681 0.85109 0.76499 0.79488 0.78487 1.21142 1.22268 1.19287 0.92511 0.86824 0.95064 0.85116 0.82993 0.82176 0.83264 0.75648 0.89867 0.93878 0.90811 0.88668 0.89130 0.92641 0.93563 0.96163 0.95486 0.79784 0.94010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.94 11.13 113.37 1.26 2.20 16 2 O -0.32 -9.41 9.74 -78.06 -0.76 -10.17 16 3 C 0.08 2.19 6.47 24.03 0.16 2.35 16 4 C -0.16 -3.92 6.35 -20.15 -0.13 -4.04 16 5 C -0.07 -1.35 10.06 22.26 0.22 -1.12 16 6 C -0.15 -2.06 9.97 22.03 0.22 -1.84 16 7 C -0.08 -0.99 10.01 22.29 0.22 -0.77 16 8 C -0.14 -2.15 10.08 22.39 0.23 -1.93 16 9 C 0.12 2.52 7.25 39.13 0.28 2.80 16 10 N -0.57 -11.22 6.04 -176.83 -1.07 -12.29 16 11 H 0.43 5.84 8.08 -92.71 -0.75 5.09 16 12 C -0.01 -0.27 6.98 39.78 0.28 0.01 16 13 C 0.58 16.27 7.74 86.34 0.67 16.94 16 14 O -0.55 -19.24 15.85 7.10 0.11 -19.12 16 15 N -0.71 -15.20 4.52 -446.84 -2.02 -17.22 16 16 C 0.14 3.10 2.57 44.99 0.12 3.22 16 17 H 0.07 1.84 7.58 -2.39 -0.02 1.83 16 18 C -0.15 -2.77 9.48 71.98 0.68 -2.09 16 19 C -0.11 -2.22 4.75 30.59 0.15 -2.07 16 20 C -0.11 -3.40 5.22 30.60 0.16 -3.24 16 21 C 0.15 5.74 6.26 86.38 0.54 6.28 16 22 N -0.75 -38.53 5.60 -343.44 -1.92 -40.46 16 23 C -0.25 -13.86 9.99 84.03 0.84 -13.02 16 24 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 25 C -0.08 -4.55 5.50 84.86 0.47 -4.08 16 26 N -0.97 -60.21 13.06 21.65 0.28 -59.92 16 27 Si 0.98 46.07 29.55 68.60 2.03 48.09 16 28 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 29 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 30 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 31 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.13 2.22 8.06 -2.91 -0.02 2.19 16 35 H 0.15 1.26 8.06 -2.91 -0.02 1.24 16 36 H 0.16 1.00 8.06 -2.91 -0.02 0.97 16 37 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 38 H 0.41 6.61 7.62 -92.71 -0.71 5.90 16 39 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.07 1.07 8.14 -2.39 -0.02 1.06 16 42 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.05 1.69 7.75 -2.39 -0.02 1.67 16 45 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 46 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 47 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 48 H 0.37 20.49 7.67 -92.71 -0.71 19.78 16 49 H 0.25 15.06 8.31 -92.70 -0.77 14.29 16 Total: -1.00 -77.96 412.12 1.83 -76.13 By element: Atomic # 1 Polarization: 36.58 SS G_CDS: -1.18 Total: 35.39 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: 6.36 Total: -0.43 kcal Atomic # 7 Polarization: -125.16 SS G_CDS: -4.73 Total: -129.89 kcal Atomic # 8 Polarization: -28.65 SS G_CDS: -0.65 Total: -29.29 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.09 kcal Total: -77.96 1.83 -76.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649469961.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.064 kcal (2) G-P(sol) polarization free energy of solvation -77.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds