Wall clock time and date at job start Wed Apr 1 2020 04:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47348 * 2 1 4 4 C 1.53003 * 109.46617 * 240.00296 * 2 1 3 5 5 C 1.53003 * 109.46844 * 175.00078 * 4 2 1 6 6 C 1.53000 * 109.47411 * 179.97438 * 5 4 2 7 7 N 1.46497 * 109.47154 * 179.97438 * 6 5 4 8 8 C 1.36940 * 119.99759 * 179.97438 * 7 6 5 9 9 H 1.08001 * 119.99933 * 0.02562 * 8 7 6 10 10 C 1.38811 * 119.99899 * 180.02562 * 8 7 6 11 11 N 1.31613 * 120.00066 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 119.99937 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47150 * 90.00274 * 12 10 8 14 14 H 1.48502 * 109.46907 * 210.00311 * 12 10 8 15 15 H 1.48503 * 109.47088 * 330.00045 * 12 10 8 16 16 N 1.46498 * 109.47063 * 120.00221 * 2 1 3 17 17 C 1.34771 * 119.99817 * 274.99533 * 16 2 1 18 18 O 1.21581 * 120.00208 * 0.02562 * 17 16 2 19 19 C 1.47601 * 119.99704 * 180.02562 * 17 16 2 20 20 C 1.39763 * 120.08414 * 359.97438 * 19 17 16 21 21 C 1.37647 * 119.94151 * 179.71919 * 20 19 17 22 22 C 1.39163 * 120.09449 * 0.25392 * 21 20 19 23 23 C 1.39147 * 120.08815 * 0.03325 * 22 21 20 24 24 C 1.37658 * 120.12002 * 359.96826 * 23 22 21 25 25 C 1.50656 * 119.82073 * 180.02562 * 23 22 21 26 26 C 1.52904 * 109.50632 * 326.08253 * 25 23 22 27 27 C 1.50501 * 109.87106 * 48.51770 * 26 25 23 28 28 O 1.21281 * 119.59989 * 144.81430 * 27 26 25 29 29 N 1.34525 * 120.79857 * 324.83801 * 27 26 25 30 30 H 1.08999 * 109.47348 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46910 * 300.00019 * 1 2 3 32 32 H 1.09001 * 109.47272 * 59.99472 * 1 2 3 33 33 H 1.09001 * 109.47336 * 294.99381 * 4 2 1 34 34 H 1.09000 * 109.47568 * 55.00138 * 4 2 1 35 35 H 1.09006 * 109.47033 * 299.99651 * 5 4 2 36 36 H 1.09001 * 109.47513 * 59.99678 * 5 4 2 37 37 H 1.08998 * 109.47039 * 300.00353 * 6 5 4 38 38 H 1.09009 * 109.46560 * 59.99712 * 6 5 4 39 39 H 0.96998 * 120.00212 * 0.02562 * 7 6 5 40 40 H 0.97003 * 120.00071 * 180.02562 * 11 10 8 41 41 H 0.97000 * 119.99853 * 95.00054 * 16 2 1 42 42 H 1.08002 * 120.03121 * 0.02562 * 20 19 17 43 43 H 1.08001 * 119.94716 * 180.28385 * 21 20 19 44 44 H 1.08002 * 120.04321 * 180.02562 * 24 23 22 45 45 H 1.09005 * 109.47477 * 206.06571 * 25 23 22 46 46 H 1.09003 * 109.44702 * 86.08615 * 25 23 22 47 47 H 1.08996 * 109.41038 * 288.38939 * 26 25 23 48 48 H 1.09005 * 109.40475 * 168.63085 * 26 25 23 49 49 H 0.97000 * 119.72131 * 180.73454 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5648 -0.6133 -1.3138 6 6 4.0748 -1.3350 -2.5628 7 7 5.5348 -1.2311 -2.6248 8 6 6.2186 -1.8061 -3.6626 9 1 5.6816 -2.3358 -4.4355 10 6 7.6021 -1.7082 -3.7211 11 7 8.2565 -1.0631 -2.7789 12 14 8.5348 -2.4919 -5.1371 13 1 8.6670 -1.5123 -6.2453 14 1 9.8853 -2.9008 -4.6741 15 1 7.7938 -3.6858 -5.6175 16 7 2.0183 -0.6906 1.1961 17 6 2.1471 -0.0183 2.3570 18 8 1.8576 1.1613 2.4118 19 6 2.6397 -0.7140 3.5620 20 6 2.9725 -2.0701 3.5012 21 6 3.4370 -2.7146 4.6253 22 6 3.5706 -2.0192 5.8232 23 6 3.2344 -0.6705 5.8882 24 6 2.7692 -0.0198 4.7679 25 6 3.3820 0.0766 7.1881 26 6 3.0786 -0.8639 8.3549 27 6 3.8364 -2.1528 8.1834 28 8 4.2669 -2.7291 9.1599 29 7 4.0425 -2.6731 6.9601 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.7516 -1.7715 -1.2057 34 1 1.6053 -0.2617 -2.1371 35 1 3.8532 0.4370 -1.3575 36 1 3.9995 -1.0728 -0.4261 37 1 3.7864 -2.3852 -2.5187 38 1 3.6401 -0.8758 -3.4507 39 1 6.0172 -0.7557 -1.9304 40 1 9.2232 -0.9943 -2.8199 41 1 2.2490 -1.6318 1.1525 42 1 2.8700 -2.6107 2.5718 43 1 3.6985 -3.7614 4.5772 44 1 2.5090 1.0271 4.8196 45 1 2.6854 0.9149 7.2066 46 1 4.4021 0.4500 7.2783 47 1 2.0093 -1.0734 8.3826 48 1 3.3778 -0.3896 9.2896 49 1 4.5238 -3.5103 6.8684 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649473040.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:40 Heat of formation + Delta-G solvation = -56.664019 kcal Electronic energy + Delta-G solvation = -29039.972224 eV Core-core repulsion = 24965.979786 eV Total energy + Delta-G solvation = -4073.992438 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.50017 -40.16845 -38.75688 -36.81068 -35.60694 -34.88564 -34.49878 -32.66250 -31.39797 -30.59843 -29.85762 -29.23699 -25.72326 -25.13015 -24.43228 -23.23993 -22.92303 -21.42885 -20.86407 -20.75683 -19.54855 -18.49248 -17.65110 -17.43134 -17.02004 -16.60659 -16.23040 -15.44033 -15.12215 -14.94417 -14.81453 -14.62554 -14.36062 -14.16520 -14.12317 -13.86595 -13.64060 -13.54380 -13.41251 -13.02476 -12.96977 -12.70786 -12.32061 -12.18164 -12.12013 -11.95924 -11.47656 -11.33342 -11.20580 -11.04957 -10.86714 -10.81955 -10.51665 -10.48081 -10.42596 -10.04818 -10.00020 -9.69479 -9.33452 -9.17587 -8.87262 -8.49279 -6.92036 -5.76545 -3.05319 0.36040 0.87984 1.93494 2.52374 2.69592 3.02316 3.42941 3.47731 3.49653 3.52156 3.83636 4.11766 4.18405 4.39370 4.51866 4.57158 4.60461 4.71639 4.76330 4.82665 4.94454 5.03477 5.13139 5.22058 5.27144 5.40340 5.42654 5.51097 5.53732 5.57018 5.61143 5.62188 5.72729 5.78370 5.90060 5.98245 6.04910 6.09922 6.15773 6.19250 6.29745 6.34476 6.39738 6.45259 6.65324 6.85467 6.88731 7.39564 7.47039 7.69300 8.10548 8.42531 9.53301 10.12406 10.46577 11.46405 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010005 B = 0.002167 C = 0.001866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2798.030408 B =12919.771452 C =15001.995232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.141 3.859 3 H 0.090 0.910 4 C -0.123 4.123 5 C -0.126 4.126 6 C 0.153 3.847 7 N -0.735 5.735 8 C -0.240 4.240 9 H 0.070 0.930 10 C -0.015 4.015 11 N -0.934 5.934 12 Si 0.907 3.093 13 H -0.290 1.290 14 H -0.291 1.291 15 H -0.282 1.282 16 N -0.716 5.716 17 C 0.562 3.438 18 O -0.541 6.541 19 C -0.153 4.153 20 C -0.051 4.051 21 C -0.157 4.157 22 C 0.183 3.817 23 C -0.135 4.135 24 C -0.022 4.022 25 C -0.077 4.077 26 C -0.139 4.139 27 C 0.522 3.478 28 O -0.526 6.526 29 N -0.662 5.662 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.016 0.984 38 H 0.017 0.983 39 H 0.383 0.617 40 H 0.255 0.745 41 H 0.399 0.601 42 H 0.135 0.865 43 H 0.136 0.864 44 H 0.144 0.856 45 H 0.096 0.904 46 H 0.086 0.914 47 H 0.105 0.895 48 H 0.111 0.889 49 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.347 -0.394 20.098 26.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.037 3.963 3 H 0.108 0.892 4 C -0.162 4.162 5 C -0.164 4.164 6 C 0.025 3.975 7 N -0.379 5.379 8 C -0.371 4.371 9 H 0.088 0.912 10 C -0.211 4.211 11 N -0.582 5.582 12 Si 0.738 3.262 13 H -0.217 1.217 14 H -0.218 1.218 15 H -0.208 1.208 16 N -0.368 5.368 17 C 0.350 3.650 18 O -0.419 6.419 19 C -0.157 4.157 20 C -0.071 4.071 21 C -0.177 4.177 22 C 0.086 3.914 23 C -0.137 4.137 24 C -0.041 4.041 25 C -0.114 4.114 26 C -0.178 4.178 27 C 0.311 3.689 28 O -0.401 6.401 29 N -0.306 5.306 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.034 0.966 38 H 0.035 0.965 39 H 0.217 0.783 40 H 0.065 0.935 41 H 0.235 0.765 42 H 0.152 0.848 43 H 0.154 0.846 44 H 0.161 0.839 45 H 0.114 0.886 46 H 0.105 0.895 47 H 0.123 0.877 48 H 0.129 0.871 49 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -17.366 0.197 20.615 26.955 hybrid contribution 1.159 -1.251 -0.832 1.898 sum -16.206 -1.055 19.783 25.596 Atomic orbital electron populations 1.22173 0.95364 1.02017 1.02479 1.21073 0.93642 0.97875 0.83694 0.89154 1.21861 0.96919 1.00759 0.96630 1.21738 0.93602 1.01524 0.99507 1.20649 0.86201 0.96406 0.94230 1.42382 1.00205 1.66207 1.29066 1.19240 0.89438 1.27089 1.01321 0.91219 1.24756 0.96471 1.01261 0.98646 1.69661 1.07209 1.47024 1.34351 0.86188 0.79380 0.78820 0.81797 1.21704 1.21761 1.20776 1.46015 1.67031 1.14123 1.09610 1.18096 0.77463 0.86439 0.83043 1.90773 1.50576 1.15453 1.85081 1.19916 1.06738 0.94455 0.94626 1.21154 0.94540 0.93223 0.98135 1.20718 1.04948 1.00533 0.91546 1.17813 0.95512 0.91236 0.86843 1.19434 1.05604 0.91934 0.96777 1.20940 0.93236 1.00224 0.89712 1.20444 1.04003 0.97632 0.89342 1.21719 1.02049 0.92699 1.01356 1.20838 0.79171 0.87056 0.81871 1.90797 1.49438 1.62098 1.37760 1.43592 1.55517 1.26312 1.05131 0.92531 0.92272 0.91486 0.91427 0.90172 0.91896 0.92084 0.96602 0.96504 0.78332 0.93515 0.76497 0.84764 0.84575 0.83855 0.88588 0.89547 0.87656 0.87069 0.74835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 9.48 37.16 0.35 -1.15 16 2 C 0.14 1.52 2.57 -67.93 -0.17 1.35 16 3 H 0.09 1.16 7.58 -51.93 -0.39 0.77 16 4 C -0.12 -1.37 4.75 -26.73 -0.13 -1.50 16 5 C -0.13 -1.92 5.22 -26.73 -0.14 -2.05 16 6 C 0.15 2.99 6.26 -4.04 -0.03 2.97 16 7 N -0.73 -18.77 5.60 -59.91 -0.34 -19.11 16 8 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 9 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 10 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 11 N -0.93 -28.50 13.06 55.49 0.72 -27.77 16 12 Si 0.91 22.46 29.55 -169.99 -5.02 17.44 16 13 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 14 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 15 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 16 N -0.72 -7.35 4.48 -54.83 -0.25 -7.59 16 17 C 0.56 6.72 7.73 -12.44 -0.10 6.62 16 18 O -0.54 -8.21 16.00 5.29 0.08 -8.13 16 19 C -0.15 -1.50 5.88 -104.94 -0.62 -2.12 16 20 C -0.05 -0.40 9.53 -39.23 -0.37 -0.78 16 21 C -0.16 -1.12 9.89 -39.45 -0.39 -1.51 16 22 C 0.18 1.40 6.51 -83.75 -0.55 0.85 16 23 C -0.13 -1.03 5.65 -104.52 -0.59 -1.62 16 24 C -0.02 -0.19 9.22 -39.23 -0.36 -0.56 16 25 C -0.08 -0.42 5.99 -27.95 -0.17 -0.59 16 26 C -0.14 -0.77 6.08 -28.03 -0.17 -0.94 16 27 C 0.52 4.50 7.72 -11.19 -0.09 4.41 16 28 O -0.53 -6.46 17.91 5.56 0.10 -6.36 16 29 N -0.66 -4.87 5.34 -9.98 -0.05 -4.93 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.06 0.93 7.75 -51.93 -0.40 0.53 16 37 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.02 0.34 8.14 -51.92 -0.42 -0.08 16 39 H 0.38 10.34 7.67 -40.82 -0.31 10.02 16 40 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 41 H 0.40 3.29 6.62 -40.82 -0.27 3.02 16 42 H 0.13 0.81 6.39 -52.49 -0.34 0.47 16 43 H 0.14 0.69 8.06 -52.49 -0.42 0.26 16 44 H 0.14 1.25 7.64 -52.49 -0.40 0.85 16 45 H 0.10 0.37 8.06 -51.93 -0.42 -0.05 16 46 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 47 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.41 2.53 8.82 -40.82 -0.36 2.17 16 LS Contribution 405.53 15.07 6.11 6.11 Total: -1.00 -36.12 405.53 -9.91 -46.03 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -7.51 Total: 8.37 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: -3.76 Total: -4.06 kcal Atomic # 7 Polarization: -59.49 SS G_CDS: 0.09 Total: -59.40 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: 0.18 Total: -14.49 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -36.12 -9.91 -46.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649473040.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.637 kcal (2) G-P(sol) polarization free energy of solvation -36.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds