Wall clock time and date at job start Wed Apr 1 2020 04:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47348 * 2 1 4 4 C 1.53003 * 109.46617 * 240.00296 * 2 1 3 5 5 C 1.53003 * 109.46844 * 175.00078 * 4 2 1 6 6 C 1.53000 * 109.47411 * 179.97438 * 5 4 2 7 7 N 1.46497 * 109.47154 * 179.97438 * 6 5 4 8 8 C 1.36940 * 119.99759 * 179.97438 * 7 6 5 9 9 H 1.08001 * 119.99933 * 0.02562 * 8 7 6 10 10 C 1.38811 * 119.99899 * 180.02562 * 8 7 6 11 11 N 1.31613 * 120.00066 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 119.99937 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47150 * 90.00274 * 12 10 8 14 14 H 1.48502 * 109.46907 * 210.00311 * 12 10 8 15 15 H 1.48503 * 109.47088 * 330.00045 * 12 10 8 16 16 N 1.46498 * 109.47063 * 120.00221 * 2 1 3 17 17 C 1.34771 * 119.99817 * 274.99533 * 16 2 1 18 18 O 1.21581 * 120.00208 * 0.02562 * 17 16 2 19 19 C 1.47601 * 119.99704 * 180.02562 * 17 16 2 20 20 C 1.39763 * 120.08414 * 359.97438 * 19 17 16 21 21 C 1.37647 * 119.94151 * 179.71919 * 20 19 17 22 22 C 1.39163 * 120.09449 * 0.25392 * 21 20 19 23 23 C 1.39147 * 120.08815 * 0.03325 * 22 21 20 24 24 C 1.37658 * 120.12002 * 359.96826 * 23 22 21 25 25 C 1.50656 * 119.82073 * 180.02562 * 23 22 21 26 26 C 1.52904 * 109.50632 * 326.08253 * 25 23 22 27 27 C 1.50501 * 109.87106 * 48.51770 * 26 25 23 28 28 O 1.21281 * 119.59989 * 144.81430 * 27 26 25 29 29 N 1.34525 * 120.79857 * 324.83801 * 27 26 25 30 30 H 1.08999 * 109.47348 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46910 * 300.00019 * 1 2 3 32 32 H 1.09001 * 109.47272 * 59.99472 * 1 2 3 33 33 H 1.09001 * 109.47336 * 294.99381 * 4 2 1 34 34 H 1.09000 * 109.47568 * 55.00138 * 4 2 1 35 35 H 1.09006 * 109.47033 * 299.99651 * 5 4 2 36 36 H 1.09001 * 109.47513 * 59.99678 * 5 4 2 37 37 H 1.08998 * 109.47039 * 300.00353 * 6 5 4 38 38 H 1.09009 * 109.46560 * 59.99712 * 6 5 4 39 39 H 0.96998 * 120.00212 * 0.02562 * 7 6 5 40 40 H 0.97003 * 120.00071 * 180.02562 * 11 10 8 41 41 H 0.97000 * 119.99853 * 95.00054 * 16 2 1 42 42 H 1.08002 * 120.03121 * 0.02562 * 20 19 17 43 43 H 1.08001 * 119.94716 * 180.28385 * 21 20 19 44 44 H 1.08002 * 120.04321 * 180.02562 * 24 23 22 45 45 H 1.09005 * 109.47477 * 206.06571 * 25 23 22 46 46 H 1.09003 * 109.44702 * 86.08615 * 25 23 22 47 47 H 1.08996 * 109.41038 * 288.38939 * 26 25 23 48 48 H 1.09005 * 109.40475 * 168.63085 * 26 25 23 49 49 H 0.97000 * 119.72131 * 180.73454 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5648 -0.6133 -1.3138 6 6 4.0748 -1.3350 -2.5628 7 7 5.5348 -1.2311 -2.6248 8 6 6.2186 -1.8061 -3.6626 9 1 5.6816 -2.3358 -4.4355 10 6 7.6021 -1.7082 -3.7211 11 7 8.2565 -1.0631 -2.7789 12 14 8.5348 -2.4919 -5.1371 13 1 8.6670 -1.5123 -6.2453 14 1 9.8853 -2.9008 -4.6741 15 1 7.7938 -3.6858 -5.6175 16 7 2.0183 -0.6906 1.1961 17 6 2.1471 -0.0183 2.3570 18 8 1.8576 1.1613 2.4118 19 6 2.6397 -0.7140 3.5620 20 6 2.9725 -2.0701 3.5012 21 6 3.4370 -2.7146 4.6253 22 6 3.5706 -2.0192 5.8232 23 6 3.2344 -0.6705 5.8882 24 6 2.7692 -0.0198 4.7679 25 6 3.3820 0.0766 7.1881 26 6 3.0786 -0.8639 8.3549 27 6 3.8364 -2.1528 8.1834 28 8 4.2669 -2.7291 9.1599 29 7 4.0425 -2.6731 6.9601 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.7516 -1.7715 -1.2057 34 1 1.6053 -0.2617 -2.1371 35 1 3.8532 0.4370 -1.3575 36 1 3.9995 -1.0728 -0.4261 37 1 3.7864 -2.3852 -2.5187 38 1 3.6401 -0.8758 -3.4507 39 1 6.0172 -0.7557 -1.9304 40 1 9.2232 -0.9943 -2.8199 41 1 2.2490 -1.6318 1.1525 42 1 2.8700 -2.6107 2.5718 43 1 3.6985 -3.7614 4.5772 44 1 2.5090 1.0271 4.8196 45 1 2.6854 0.9149 7.2066 46 1 4.4021 0.4500 7.2783 47 1 2.0093 -1.0734 8.3826 48 1 3.3778 -0.3896 9.2896 49 1 4.5238 -3.5103 6.8684 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649473040.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:39 Heat of formation + Delta-G solvation = -81.186671 kcal Electronic energy + Delta-G solvation = -29041.035606 eV Core-core repulsion = 24965.979786 eV Total energy + Delta-G solvation = -4075.055820 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.13740 -41.01900 -39.50526 -37.92945 -36.50719 -36.32055 -35.05318 -34.16740 -32.70017 -31.20439 -31.09720 -30.16832 -27.22000 -25.65170 -25.33616 -24.59286 -23.78504 -22.48066 -22.09111 -21.66573 -20.22960 -19.14290 -19.09714 -18.36372 -18.11400 -17.42426 -16.95200 -16.64831 -16.06138 -16.04144 -15.90965 -15.53937 -15.36412 -15.33126 -15.14190 -14.85265 -14.71753 -14.45492 -14.22142 -14.13475 -13.81674 -13.49152 -13.40321 -13.16760 -12.98882 -12.85582 -12.77362 -12.52152 -12.36841 -12.23255 -12.05696 -12.02280 -11.84731 -11.77234 -11.69309 -11.47136 -11.19025 -10.96987 -10.92523 -10.09183 -9.92860 -9.14467 -8.99752 -7.95403 -5.24499 -0.32923 0.27680 1.25299 1.47203 1.49276 1.57681 1.92239 1.93637 2.20385 2.56072 2.81057 3.28295 3.38403 3.58878 3.62118 3.67186 3.78890 3.94857 4.00581 4.10548 4.15169 4.22862 4.27075 4.31740 4.37835 4.44902 4.61693 4.70819 4.77886 4.84103 4.85267 4.87851 4.89350 4.95432 5.00443 5.04414 5.05265 5.12665 5.16854 5.31280 5.34913 5.39715 5.45146 5.51948 5.55587 5.61275 5.70346 6.03508 6.27255 6.57180 6.84377 7.24230 7.32788 8.10662 8.32193 9.28376 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010005 B = 0.002167 C = 0.001866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2798.030408 B =12919.771452 C =15001.995232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.143 3.857 3 H 0.065 0.935 4 C -0.110 4.110 5 C -0.113 4.113 6 C 0.149 3.851 7 N -0.751 5.751 8 C -0.245 4.245 9 H 0.078 0.922 10 C -0.079 4.079 11 N -0.972 5.972 12 Si 0.975 3.025 13 H -0.288 1.288 14 H -0.295 1.295 15 H -0.267 1.267 16 N -0.708 5.708 17 C 0.558 3.442 18 O -0.582 6.582 19 C -0.171 4.171 20 C -0.051 4.051 21 C -0.154 4.154 22 C 0.178 3.822 23 C -0.135 4.135 24 C -0.031 4.031 25 C -0.075 4.075 26 C -0.133 4.133 27 C 0.518 3.482 28 O -0.568 6.568 29 N -0.656 5.656 30 H 0.073 0.927 31 H 0.044 0.956 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.044 0.956 36 H 0.059 0.941 37 H 0.027 0.973 38 H 0.019 0.981 39 H 0.371 0.629 40 H 0.251 0.749 41 H 0.411 0.589 42 H 0.153 0.847 43 H 0.160 0.840 44 H 0.139 0.861 45 H 0.115 0.885 46 H 0.087 0.913 47 H 0.121 0.879 48 H 0.123 0.877 49 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.642 -1.792 19.656 27.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.039 3.961 3 H 0.083 0.917 4 C -0.148 4.148 5 C -0.151 4.151 6 C 0.023 3.977 7 N -0.393 5.393 8 C -0.377 4.377 9 H 0.095 0.905 10 C -0.271 4.271 11 N -0.623 5.623 12 Si 0.803 3.197 13 H -0.215 1.215 14 H -0.222 1.222 15 H -0.191 1.191 16 N -0.360 5.360 17 C 0.347 3.653 18 O -0.463 6.463 19 C -0.175 4.175 20 C -0.070 4.070 21 C -0.174 4.174 22 C 0.081 3.919 23 C -0.137 4.137 24 C -0.051 4.051 25 C -0.112 4.112 26 C -0.172 4.172 27 C 0.309 3.691 28 O -0.447 6.447 29 N -0.299 5.299 30 H 0.092 0.908 31 H 0.063 0.937 32 H 0.097 0.903 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.063 0.937 36 H 0.077 0.923 37 H 0.045 0.955 38 H 0.037 0.963 39 H 0.203 0.797 40 H 0.060 0.940 41 H 0.248 0.752 42 H 0.171 0.829 43 H 0.177 0.823 44 H 0.157 0.843 45 H 0.133 0.867 46 H 0.106 0.894 47 H 0.139 0.861 48 H 0.142 0.858 49 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -18.712 -1.240 20.128 27.510 hybrid contribution 1.514 -0.826 -0.706 1.863 sum -17.198 -2.066 19.423 26.024 Atomic orbital electron populations 1.22096 0.93712 1.03080 1.02351 1.20990 0.94831 0.96575 0.83699 0.91701 1.21762 0.93510 1.02337 0.97167 1.21598 0.96517 0.99674 0.97324 1.20870 0.83084 0.97482 0.96234 1.42661 1.02608 1.65859 1.28180 1.19677 0.89980 1.26262 1.01793 0.90457 1.25618 0.97579 1.02532 1.01411 1.69825 1.07061 1.48931 1.36442 0.85120 0.77667 0.78286 0.78583 1.21484 1.22202 1.19135 1.45973 1.66392 1.14597 1.09080 1.18466 0.76851 0.86059 0.83911 1.90744 1.52589 1.17230 1.85780 1.19894 1.08165 0.95409 0.94038 1.21343 0.94009 0.92444 0.99210 1.20988 1.03951 1.01598 0.90910 1.17962 0.95436 0.91420 0.87067 1.19622 1.04751 0.92134 0.97232 1.20982 0.93806 1.00227 0.90050 1.20507 1.04680 0.97921 0.88098 1.21767 1.02460 0.91119 1.01884 1.21401 0.78618 0.87614 0.81469 1.90778 1.51401 1.63495 1.39015 1.43571 1.55051 1.26402 1.04889 0.90802 0.93715 0.90343 0.89173 0.89102 0.93689 0.92273 0.95476 0.96315 0.79720 0.94035 0.75154 0.82924 0.82283 0.84285 0.86662 0.89419 0.86107 0.85838 0.74279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 9.48 71.98 0.68 -1.90 16 2 C 0.14 2.93 2.57 44.99 0.12 3.05 16 3 H 0.06 1.69 7.58 -2.39 -0.02 1.67 16 4 C -0.11 -2.19 4.75 30.60 0.15 -2.05 16 5 C -0.11 -3.34 5.22 30.60 0.16 -3.18 16 6 C 0.15 5.67 6.26 86.38 0.54 6.21 16 7 N -0.75 -38.27 5.60 -343.45 -1.92 -40.20 16 8 C -0.25 -13.73 9.99 84.03 0.84 -12.89 16 9 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 10 C -0.08 -4.59 5.50 84.86 0.47 -4.12 16 11 N -0.97 -60.05 13.06 21.65 0.28 -59.76 16 12 Si 0.97 46.01 29.55 68.60 2.03 48.03 16 13 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 14 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 15 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 16 N -0.71 -13.83 4.48 -445.64 -2.00 -15.83 16 17 C 0.56 13.36 7.73 86.72 0.67 14.03 16 18 O -0.58 -18.28 16.00 -3.97 -0.06 -18.34 16 19 C -0.17 -3.28 5.88 -20.07 -0.12 -3.39 16 20 C -0.05 -0.72 9.53 22.50 0.21 -0.51 16 21 C -0.15 -1.90 9.89 22.35 0.22 -1.68 16 22 C 0.18 2.48 6.51 38.38 0.25 2.73 16 23 C -0.13 -1.92 5.65 -19.80 -0.11 -2.03 16 24 C -0.03 -0.55 9.22 22.50 0.21 -0.34 16 25 C -0.08 -0.71 5.99 29.80 0.18 -0.53 16 26 C -0.13 -1.27 6.08 29.75 0.18 -1.09 16 27 C 0.52 8.52 7.72 87.63 0.68 9.20 16 28 O -0.57 -13.91 17.91 -3.03 -0.05 -13.97 16 29 N -0.66 -8.95 5.34 -304.02 -1.62 -10.58 16 30 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.04 0.89 8.14 -2.39 -0.02 0.88 16 32 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 36 H 0.06 1.76 7.75 -2.39 -0.02 1.74 16 37 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.02 0.72 8.14 -2.38 -0.02 0.70 16 39 H 0.37 20.35 7.67 -92.71 -0.71 19.64 16 40 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 41 H 0.41 5.97 6.62 -92.71 -0.61 5.35 16 42 H 0.15 1.48 6.39 -2.91 -0.02 1.46 16 43 H 0.16 1.18 8.06 -2.91 -0.02 1.16 16 44 H 0.14 2.51 7.64 -2.91 -0.02 2.48 16 45 H 0.12 0.67 8.06 -2.38 -0.02 0.65 16 46 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 47 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 48 H 0.12 0.91 8.14 -2.38 -0.02 0.89 16 49 H 0.42 4.71 8.82 -92.71 -0.82 3.89 16 Total: -1.00 -78.92 405.53 0.82 -78.10 By element: Atomic # 1 Polarization: 32.17 SS G_CDS: -1.15 Total: 31.03 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: 5.32 Total: 1.51 kcal Atomic # 7 Polarization: -121.11 SS G_CDS: -5.26 Total: -126.37 kcal Atomic # 8 Polarization: -32.19 SS G_CDS: -0.12 Total: -32.31 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.03 kcal Total: -78.92 0.82 -78.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649473040.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.085 kcal (2) G-P(sol) polarization free energy of solvation -78.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds