Wall clock time and date at job start Wed Apr 1 2020 04:10:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 H 1.08998 * 109.47122 * 2 1
4 4 C 1.52999 * 109.46872 * 120.00371 * 2 1 3
5 5 C 1.50699 * 109.47059 * 294.99348 * 4 2 1
6 6 C 1.38231 * 119.99968 * 269.73004 * 5 4 2
7 7 C 1.38241 * 119.99482 * 179.76750 * 6 5 4
8 8 C 1.38230 * 120.00295 * 0.50546 * 7 6 5
9 9 C 1.38242 * 119.99902 * 359.75099 * 8 7 6
10 10 C 1.38234 * 120.00009 * 359.97438 * 9 8 7
11 11 C 1.50701 * 109.46565 * 239.99863 * 2 1 3
12 12 O 1.21281 * 119.99905 * 239.99845 * 11 2 1
13 13 N 1.34777 * 119.99991 * 60.00605 * 11 2 1
14 14 C 1.46502 * 119.99942 * 179.97438 * 13 11 2
15 15 C 1.53513 * 114.16704 * 204.99849 * 14 13 11
16 16 N 1.47484 * 87.93060 * 220.32609 * 15 14 13
17 17 C 1.46895 * 110.99756 * 138.70311 * 16 15 14
18 18 C 1.50706 * 109.47182 * 170.00145 * 17 16 15
19 19 O 1.21297 * 119.99667 * 0.02562 * 18 17 16
20 20 N 1.34773 * 120.00081 * 179.72734 * 18 17 16
21 21 C 1.37095 * 119.99878 * 180.02562 * 20 18 17
22 22 H 1.08004 * 120.00160 * 359.97438 * 21 20 18
23 23 C 1.38950 * 120.00380 * 179.97438 * 21 20 18
24 24 N 1.31412 * 119.99401 * 359.97438 * 23 21 20
25 25 Si 1.86800 * 120.00554 * 179.97438 * 23 21 20
26 26 H 1.48497 * 109.46783 * 60.00161 * 25 23 21
27 27 H 1.48496 * 109.47291 * 180.02562 * 25 23 21
28 28 H 1.48496 * 109.46865 * 300.00343 * 25 23 21
29 29 C 1.47477 * 87.83167 * 27.01125 * 16 15 14
30 30 H 1.09007 * 109.46832 * 299.99938 * 1 2 3
31 31 H 1.08996 * 109.47108 * 59.99425 * 1 2 3
32 32 H 1.08998 * 109.47122 * 179.97438 * 1 2 3
33 33 H 1.09003 * 109.47536 * 54.99955 * 4 2 1
34 34 H 1.09008 * 109.46893 * 174.99902 * 4 2 1
35 35 H 1.07996 * 120.00429 * 0.02562 * 6 5 4
36 36 H 1.08005 * 119.99778 * 180.23037 * 7 6 5
37 37 H 1.08005 * 120.00259 * 179.72542 * 8 7 6
38 38 H 1.07998 * 119.99974 * 179.97438 * 9 8 7
39 39 H 1.07998 * 120.00191 * 179.97438 * 10 9 8
40 40 H 0.96992 * 120.00120 * 359.97438 * 13 11 2
41 41 H 1.09003 * 113.37948 * 338.07305 * 14 13 11
42 42 H 1.09005 * 113.47855 * 105.56484 * 15 14 13
43 43 H 1.08997 * 113.53455 * 335.10065 * 15 14 13
44 44 H 1.09001 * 109.47613 * 50.00491 * 17 16 15
45 45 H 1.08998 * 109.47678 * 290.00386 * 17 16 15
46 46 H 0.96998 * 120.00525 * 359.97438 * 20 18 17
47 47 H 0.97004 * 120.00112 * 179.97438 * 24 23 21
48 48 H 1.09000 * 113.48071 * 87.76093 * 29 16 15
49 49 H 1.09004 * 113.47566 * 218.21901 * 29 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0400 -0.7213 1.2492
5 6 1.6414 0.0570 2.4766
6 6 2.4841 1.0289 2.9825
7 6 2.1162 1.7462 4.1056
8 6 0.9105 1.4842 4.7287
9 6 0.0701 0.5085 4.2258
10 6 0.4354 -0.2048 3.0995
11 6 2.0322 -0.7105 -1.2305
12 8 2.7295 -1.6966 -1.1192
13 7 1.7067 -0.2499 -2.4546
14 6 2.1953 -0.9403 -3.6508
15 6 2.2896 -0.0484 -4.8967
16 7 1.7705 -1.1832 -5.6827
17 6 0.7894 -0.7295 -6.6774
18 6 0.4661 -1.8624 -7.6172
19 8 1.0002 -2.9418 -7.4722
20 7 -0.4208 -1.6780 -8.6151
21 6 -0.7152 -2.7088 -9.4697
22 1 -0.2361 -3.6685 -9.3435
23 6 -1.6300 -2.5190 -10.4981
24 7 -2.2134 -1.3514 -10.6513
25 14 -2.0307 -3.9232 -11.6630
26 1 -2.5898 -5.0622 -10.8914
27 1 -3.0274 -3.4665 -12.6646
28 1 -0.7930 -4.3571 -12.3594
29 6 1.1005 -1.6538 -4.4561
30 1 -0.3633 0.5139 0.8901
31 1 -0.3633 0.5139 -0.8899
32 1 -0.3633 -1.0276 -0.0005
33 1 1.6054 -1.7199 1.2951
34 1 3.1264 -0.7996 1.2055
35 1 3.4279 1.2309 2.4980
36 1 2.7730 2.5082 4.4987
37 1 0.6251 2.0415 5.6087
38 1 -0.8717 0.3036 4.7129
39 1 -0.2209 -0.9673 2.7068
40 1 1.1488 0.5385 -2.5436
41 1 3.0823 -1.5470 -3.4681
42 1 3.3115 0.2282 -5.1564
43 1 1.6148 0.8072 -4.8716
44 1 1.2046 0.1045 -7.2432
45 1 -0.1201 -0.4075 -6.1702
46 1 -0.8514 -0.8163 -8.7282
47 1 -2.8518 -1.2187 -11.3695
48 1 0.1078 -1.2271 -4.3124
49 1 1.1144 -2.7378 -4.3423
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001665232496.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:10:44
Heat of formation + Delta-G solvation = -16.553947 kcal
Electronic energy + Delta-G solvation = -28642.714662 eV
Core-core repulsion = 24570.461528 eV
Total energy + Delta-G solvation = -4072.253135 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.184 amu
Computer time = 0.97 seconds
Orbital eigenvalues (eV)
-40.80270 -39.93424 -39.09997 -37.71504 -35.27442 -34.25911 -33.80689 -31.43795
-31.26905 -31.13860 -29.67530 -27.11492 -25.93753 -25.73890 -24.39483 -23.18214
-22.83224 -21.43267 -20.47134 -19.84932 -19.24741 -17.90577 -17.55528 -16.90750
-16.64663 -16.11131 -15.87952 -15.48501 -15.30998 -15.11050 -14.90622 -14.69388
-14.35695 -13.93085 -13.85990 -13.73157 -13.43340 -13.20064 -13.14824 -12.86062
-12.71814 -12.59125 -12.51422 -12.27157 -11.69901 -11.61643 -11.53477 -11.49034
-11.34729 -11.21248 -11.18310 -11.04272 -10.65749 -10.43177 -10.20055 -9.97497
-9.47999 -9.27754 -9.18177 -9.05736 -8.84805 -8.21589 -7.94971 -6.40605
-3.81258 0.97095 1.02876 2.42024 2.87878 3.21218 3.26462 3.31323
3.41924 3.90960 4.00891 4.20894 4.30111 4.38044 4.44498 4.48742
4.62449 4.65502 4.71093 4.79219 4.81306 4.96812 4.99643 5.11045
5.15365 5.16291 5.30026 5.32055 5.36133 5.37221 5.46224 5.57970
5.62829 5.64359 5.66561 5.68710 5.78188 5.83475 5.88267 6.05755
6.10154 6.15101 6.23002 6.28592 6.32622 6.49430 6.63853 7.09914
7.28438 7.56219 8.01953 8.07062 8.63425 9.19733 9.55563 10.08295
10.77216
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.025506 B = 0.001538 C = 0.001505
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1097.497262 B =18198.339938 C =18605.741705
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C -0.104 4.104
3 H 0.098 0.902
4 C -0.064 4.064
5 C -0.078 4.078
6 C -0.117 4.117
7 C -0.119 4.119
8 C -0.126 4.126
9 C -0.120 4.120
10 C -0.115 4.115
11 C 0.519 3.481
12 O -0.535 6.535
13 N -0.718 5.718
14 C 0.118 3.882
15 C -0.014 4.014
16 N -0.434 5.434
17 C 0.011 3.989
18 C 0.446 3.554
19 O -0.573 6.573
20 N -0.567 5.567
21 C -0.299 4.299
22 H 0.102 0.898
23 C 0.022 3.978
24 N -0.904 5.904
25 Si 0.931 3.069
26 H -0.274 1.274
27 H -0.285 1.285
28 H -0.273 1.273
29 C -0.008 4.008
30 H 0.072 0.928
31 H 0.060 0.940
32 H 0.063 0.937
33 H 0.081 0.919
34 H 0.082 0.918
35 H 0.122 0.878
36 H 0.120 0.880
37 H 0.119 0.881
38 H 0.121 0.879
39 H 0.123 0.877
40 H 0.400 0.600
41 H 0.129 0.871
42 H 0.093 0.907
43 H 0.070 0.930
44 H 0.089 0.911
45 H 0.059 0.941
46 H 0.391 0.609
47 H 0.271 0.729
48 H 0.069 0.931
49 H 0.093 0.907
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.276 12.079 28.428 31.182
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.125 4.125
3 H 0.116 0.884
4 C -0.101 4.101
5 C -0.078 4.078
6 C -0.135 4.135
7 C -0.137 4.137
8 C -0.144 4.144
9 C -0.138 4.138
10 C -0.133 4.133
11 C 0.305 3.695
12 O -0.411 6.411
13 N -0.369 5.369
14 C 0.012 3.988
15 C -0.144 4.144
16 N -0.156 5.156
17 C -0.121 4.121
18 C 0.231 3.769
19 O -0.456 6.456
20 N -0.204 5.204
21 C -0.428 4.428
22 H 0.120 0.880
23 C -0.179 4.179
24 N -0.545 5.545
25 Si 0.758 3.242
26 H -0.199 1.199
27 H -0.210 1.210
28 H -0.199 1.199
29 C -0.138 4.138
30 H 0.091 0.909
31 H 0.079 0.921
32 H 0.082 0.918
33 H 0.099 0.901
34 H 0.101 0.899
35 H 0.140 0.860
36 H 0.138 0.862
37 H 0.137 0.863
38 H 0.139 0.861
39 H 0.141 0.859
40 H 0.234 0.766
41 H 0.147 0.853
42 H 0.111 0.889
43 H 0.088 0.912
44 H 0.107 0.893
45 H 0.077 0.923
46 H 0.224 0.776
47 H 0.081 0.919
48 H 0.088 0.912
49 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges 5.446 10.241 28.031 30.336
hybrid contribution -1.563 0.998 -0.529 1.928
sum 3.883 11.238 27.502 29.962
Atomic orbital electron populations
1.21882 0.92672 1.03067 1.02957 1.21276 0.97892 1.00817 0.92522
0.88378 1.20429 1.02293 0.98178 0.89242 1.19891 0.94545 0.96688
0.96655 1.21100 0.99647 0.96111 0.96656 1.21157 0.96804 0.99691
0.96063 1.21160 0.94796 0.98346 1.00125 1.21172 0.99712 0.96382
0.96497 1.21124 0.96301 0.99994 0.95855 1.20657 0.79734 0.84500
0.84616 1.90726 1.37611 1.26023 1.86735 1.45997 1.53501 1.31904
1.05524 1.22697 0.98996 0.94959 0.82116 1.24317 1.02604 0.94861
0.92604 1.68792 1.24541 1.17720 1.04589 1.22497 0.95191 0.98307
0.96087 1.19644 0.83824 0.89378 0.84098 1.90537 1.54379 1.26719
1.73983 1.41851 1.37760 1.14295 1.26497 1.19658 1.22240 0.93732
1.07205 0.87998 1.25243 0.96599 0.97740 0.98337 1.69603 1.29020
1.22699 1.33209 0.85917 0.78257 0.80569 0.79481 1.19935 1.20992
1.19887 1.24396 0.96494 1.03157 0.89793 0.90949 0.92063 0.91796
0.90072 0.89934 0.86049 0.86159 0.86268 0.86125 0.85946 0.76554
0.85278 0.88902 0.91164 0.89265 0.92273 0.77587 0.91882 0.91245
0.88880
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.91 8.66 37.16 0.32 -0.59 16
2 C -0.10 -0.75 2.71 -91.77 -0.25 -1.00 16
3 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16
4 C -0.06 -0.50 4.19 -27.88 -0.12 -0.62 16
5 C -0.08 -0.57 4.71 -104.62 -0.49 -1.06 16
6 C -0.12 -0.81 9.70 -39.58 -0.38 -1.20 16
7 C -0.12 -0.76 10.05 -39.58 -0.40 -1.16 16
8 C -0.13 -0.79 10.05 -39.58 -0.40 -1.19 16
9 C -0.12 -0.77 10.05 -39.58 -0.40 -1.17 16
10 C -0.11 -0.79 7.96 -39.58 -0.32 -1.11 16
11 C 0.52 5.39 7.15 -10.98 -0.08 5.31 16
12 O -0.54 -7.80 15.51 5.56 0.09 -7.72 16
13 N -0.72 -6.55 5.28 -53.54 -0.28 -6.83 16
14 C 0.12 1.40 4.59 -67.72 -0.31 1.09 16
15 C -0.01 -0.16 7.45 -7.55 -0.06 -0.22 16
16 N -0.43 -7.15 5.82 -246.13 -1.43 -8.59 16
17 C 0.01 0.20 5.30 -4.98 -0.03 0.17 16
18 C 0.45 10.71 7.85 -10.98 -0.09 10.63 16
19 O -0.57 -16.12 16.01 5.54 0.09 -16.03 16
20 N -0.57 -14.47 5.29 -10.96 -0.06 -14.53 16
21 C -0.30 -8.43 9.68 -14.93 -0.14 -8.57 16
22 H 0.10 3.02 7.16 -52.48 -0.38 2.65 16
23 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16
24 N -0.90 -24.60 13.05 55.50 0.72 -23.88 16
25 Si 0.93 21.23 29.55 -169.99 -5.02 16.21 16
26 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16
27 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16
28 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16
29 C -0.01 -0.12 7.52 -7.56 -0.06 -0.18 16
30 H 0.07 0.41 6.27 -51.92 -0.33 0.09 16
31 H 0.06 0.32 7.56 -51.93 -0.39 -0.07 16
32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16
33 H 0.08 0.71 8.09 -51.93 -0.42 0.29 16
34 H 0.08 0.72 7.90 -51.92 -0.41 0.31 16
35 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16
36 H 0.12 0.55 8.06 -52.48 -0.42 0.13 16
37 H 0.12 0.53 8.06 -52.48 -0.42 0.11 16
38 H 0.12 0.57 8.06 -52.49 -0.42 0.14 16
39 H 0.12 0.72 8.04 -52.49 -0.42 0.30 16
40 H 0.40 2.54 8.17 -40.82 -0.33 2.20 16
41 H 0.13 1.78 7.46 -51.93 -0.39 1.39 16
42 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16
43 H 0.07 0.65 7.90 -51.93 -0.41 0.24 16
44 H 0.09 1.39 8.08 -51.93 -0.42 0.97 16
45 H 0.06 0.90 7.30 -51.93 -0.38 0.52 16
46 H 0.39 9.45 7.90 -40.82 -0.32 9.13 16
47 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16
48 H 0.07 0.91 7.42 -51.93 -0.39 0.53 16
49 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16
LS Contribution 407.30 15.07 6.14 6.14
Total: -1.00 -34.81 407.30 -10.55 -45.35
By element:
Atomic # 1 Polarization: 17.73 SS G_CDS: -7.50 Total: 10.23 kcal
Atomic # 6 Polarization: 2.93 SS G_CDS: -3.29 Total: -0.36 kcal
Atomic # 7 Polarization: -52.77 SS G_CDS: -1.05 Total: -53.82 kcal
Atomic # 8 Polarization: -23.92 SS G_CDS: 0.17 Total: -23.75 kcal
Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal
Total LS contribution 6.14 Total: 6.14 kcal
Total: -34.81 -10.55 -45.35 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001665232496.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 28.799 kcal
(2) G-P(sol) polarization free energy of solvation -34.807 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.008 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.546 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.353 kcal
(6) G-S(sol) free energy of system = (1) + (5) -16.554 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.98 seconds