Wall clock time and date at job start Wed Apr 1 2020 04:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47122 * 2 1 4 4 C 1.52999 * 109.46872 * 120.00371 * 2 1 3 5 5 C 1.50699 * 109.47059 * 294.99348 * 4 2 1 6 6 C 1.38231 * 119.99968 * 269.73004 * 5 4 2 7 7 C 1.38241 * 119.99482 * 179.76750 * 6 5 4 8 8 C 1.38230 * 120.00295 * 0.50546 * 7 6 5 9 9 C 1.38242 * 119.99902 * 359.75099 * 8 7 6 10 10 C 1.38234 * 120.00009 * 359.97438 * 9 8 7 11 11 C 1.50701 * 109.46565 * 239.99863 * 2 1 3 12 12 O 1.21281 * 119.99905 * 239.99845 * 11 2 1 13 13 N 1.34777 * 119.99991 * 60.00605 * 11 2 1 14 14 C 1.46502 * 119.99942 * 179.97438 * 13 11 2 15 15 C 1.53513 * 114.16704 * 204.99849 * 14 13 11 16 16 N 1.47484 * 87.93060 * 220.32609 * 15 14 13 17 17 C 1.46895 * 110.99756 * 138.70311 * 16 15 14 18 18 C 1.50706 * 109.47182 * 170.00145 * 17 16 15 19 19 O 1.21297 * 119.99667 * 0.02562 * 18 17 16 20 20 N 1.34773 * 120.00081 * 179.72734 * 18 17 16 21 21 C 1.37095 * 119.99878 * 180.02562 * 20 18 17 22 22 H 1.08004 * 120.00160 * 359.97438 * 21 20 18 23 23 C 1.38950 * 120.00380 * 179.97438 * 21 20 18 24 24 N 1.31412 * 119.99401 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00554 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.46783 * 60.00161 * 25 23 21 27 27 H 1.48496 * 109.47291 * 180.02562 * 25 23 21 28 28 H 1.48496 * 109.46865 * 300.00343 * 25 23 21 29 29 C 1.47477 * 87.83167 * 27.01125 * 16 15 14 30 30 H 1.09007 * 109.46832 * 299.99938 * 1 2 3 31 31 H 1.08996 * 109.47108 * 59.99425 * 1 2 3 32 32 H 1.08998 * 109.47122 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47536 * 54.99955 * 4 2 1 34 34 H 1.09008 * 109.46893 * 174.99902 * 4 2 1 35 35 H 1.07996 * 120.00429 * 0.02562 * 6 5 4 36 36 H 1.08005 * 119.99778 * 180.23037 * 7 6 5 37 37 H 1.08005 * 120.00259 * 179.72542 * 8 7 6 38 38 H 1.07998 * 119.99974 * 179.97438 * 9 8 7 39 39 H 1.07998 * 120.00191 * 179.97438 * 10 9 8 40 40 H 0.96992 * 120.00120 * 359.97438 * 13 11 2 41 41 H 1.09003 * 113.37948 * 338.07305 * 14 13 11 42 42 H 1.09005 * 113.47855 * 105.56484 * 15 14 13 43 43 H 1.08997 * 113.53455 * 335.10065 * 15 14 13 44 44 H 1.09001 * 109.47613 * 50.00491 * 17 16 15 45 45 H 1.08998 * 109.47678 * 290.00386 * 17 16 15 46 46 H 0.96998 * 120.00525 * 359.97438 * 20 18 17 47 47 H 0.97004 * 120.00112 * 179.97438 * 24 23 21 48 48 H 1.09000 * 113.48071 * 87.76093 * 29 16 15 49 49 H 1.09004 * 113.47566 * 218.21901 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 0.0570 2.4766 6 6 2.4841 1.0289 2.9825 7 6 2.1162 1.7462 4.1056 8 6 0.9105 1.4842 4.7287 9 6 0.0701 0.5085 4.2258 10 6 0.4354 -0.2048 3.0995 11 6 2.0322 -0.7105 -1.2305 12 8 2.7295 -1.6966 -1.1192 13 7 1.7067 -0.2499 -2.4546 14 6 2.1953 -0.9403 -3.6508 15 6 2.2896 -0.0484 -4.8967 16 7 1.7705 -1.1832 -5.6827 17 6 0.7894 -0.7295 -6.6774 18 6 0.4661 -1.8624 -7.6172 19 8 1.0002 -2.9418 -7.4722 20 7 -0.4208 -1.6780 -8.6151 21 6 -0.7152 -2.7088 -9.4697 22 1 -0.2361 -3.6685 -9.3435 23 6 -1.6300 -2.5190 -10.4981 24 7 -2.2134 -1.3514 -10.6513 25 14 -2.0307 -3.9232 -11.6630 26 1 -2.5898 -5.0622 -10.8914 27 1 -3.0274 -3.4665 -12.6646 28 1 -0.7930 -4.3571 -12.3594 29 6 1.1005 -1.6538 -4.4561 30 1 -0.3633 0.5139 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6054 -1.7199 1.2951 34 1 3.1264 -0.7996 1.2055 35 1 3.4279 1.2309 2.4980 36 1 2.7730 2.5082 4.4987 37 1 0.6251 2.0415 5.6087 38 1 -0.8717 0.3036 4.7129 39 1 -0.2209 -0.9673 2.7068 40 1 1.1488 0.5385 -2.5436 41 1 3.0823 -1.5470 -3.4681 42 1 3.3115 0.2282 -5.1564 43 1 1.6148 0.8072 -4.8716 44 1 1.2046 0.1045 -7.2432 45 1 -0.1201 -0.4075 -6.1702 46 1 -0.8514 -0.8163 -8.7282 47 1 -2.8518 -1.2187 -11.3695 48 1 0.1078 -1.2271 -4.3124 49 1 1.1144 -2.7378 -4.3423 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665232496.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:44 Heat of formation + Delta-G solvation = -16.553947 kcal Electronic energy + Delta-G solvation = -28642.714662 eV Core-core repulsion = 24570.461528 eV Total energy + Delta-G solvation = -4072.253135 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.80270 -39.93424 -39.09997 -37.71504 -35.27442 -34.25911 -33.80689 -31.43795 -31.26905 -31.13860 -29.67530 -27.11492 -25.93753 -25.73890 -24.39483 -23.18214 -22.83224 -21.43267 -20.47134 -19.84932 -19.24741 -17.90577 -17.55528 -16.90750 -16.64663 -16.11131 -15.87952 -15.48501 -15.30998 -15.11050 -14.90622 -14.69388 -14.35695 -13.93085 -13.85990 -13.73157 -13.43340 -13.20064 -13.14824 -12.86062 -12.71814 -12.59125 -12.51422 -12.27157 -11.69901 -11.61643 -11.53477 -11.49034 -11.34729 -11.21248 -11.18310 -11.04272 -10.65749 -10.43177 -10.20055 -9.97497 -9.47999 -9.27754 -9.18177 -9.05736 -8.84805 -8.21589 -7.94971 -6.40605 -3.81258 0.97095 1.02876 2.42024 2.87878 3.21218 3.26462 3.31323 3.41924 3.90960 4.00891 4.20894 4.30111 4.38044 4.44498 4.48742 4.62449 4.65502 4.71093 4.79219 4.81306 4.96812 4.99643 5.11045 5.15365 5.16291 5.30026 5.32055 5.36133 5.37221 5.46224 5.57970 5.62829 5.64359 5.66561 5.68710 5.78188 5.83475 5.88267 6.05755 6.10154 6.15101 6.23002 6.28592 6.32622 6.49430 6.63853 7.09914 7.28438 7.56219 8.01953 8.07062 8.63425 9.19733 9.55563 10.08295 10.77216 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.025506 B = 0.001538 C = 0.001505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.497262 B =18198.339938 C =18605.741705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.104 4.104 3 H 0.098 0.902 4 C -0.064 4.064 5 C -0.078 4.078 6 C -0.117 4.117 7 C -0.119 4.119 8 C -0.126 4.126 9 C -0.120 4.120 10 C -0.115 4.115 11 C 0.519 3.481 12 O -0.535 6.535 13 N -0.718 5.718 14 C 0.118 3.882 15 C -0.014 4.014 16 N -0.434 5.434 17 C 0.011 3.989 18 C 0.446 3.554 19 O -0.573 6.573 20 N -0.567 5.567 21 C -0.299 4.299 22 H 0.102 0.898 23 C 0.022 3.978 24 N -0.904 5.904 25 Si 0.931 3.069 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.273 1.273 29 C -0.008 4.008 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.123 0.877 40 H 0.400 0.600 41 H 0.129 0.871 42 H 0.093 0.907 43 H 0.070 0.930 44 H 0.089 0.911 45 H 0.059 0.941 46 H 0.391 0.609 47 H 0.271 0.729 48 H 0.069 0.931 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.276 12.079 28.428 31.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.125 4.125 3 H 0.116 0.884 4 C -0.101 4.101 5 C -0.078 4.078 6 C -0.135 4.135 7 C -0.137 4.137 8 C -0.144 4.144 9 C -0.138 4.138 10 C -0.133 4.133 11 C 0.305 3.695 12 O -0.411 6.411 13 N -0.369 5.369 14 C 0.012 3.988 15 C -0.144 4.144 16 N -0.156 5.156 17 C -0.121 4.121 18 C 0.231 3.769 19 O -0.456 6.456 20 N -0.204 5.204 21 C -0.428 4.428 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.545 5.545 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 C -0.138 4.138 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.139 0.861 39 H 0.141 0.859 40 H 0.234 0.766 41 H 0.147 0.853 42 H 0.111 0.889 43 H 0.088 0.912 44 H 0.107 0.893 45 H 0.077 0.923 46 H 0.224 0.776 47 H 0.081 0.919 48 H 0.088 0.912 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.446 10.241 28.031 30.336 hybrid contribution -1.563 0.998 -0.529 1.928 sum 3.883 11.238 27.502 29.962 Atomic orbital electron populations 1.21882 0.92672 1.03067 1.02957 1.21276 0.97892 1.00817 0.92522 0.88378 1.20429 1.02293 0.98178 0.89242 1.19891 0.94545 0.96688 0.96655 1.21100 0.99647 0.96111 0.96656 1.21157 0.96804 0.99691 0.96063 1.21160 0.94796 0.98346 1.00125 1.21172 0.99712 0.96382 0.96497 1.21124 0.96301 0.99994 0.95855 1.20657 0.79734 0.84500 0.84616 1.90726 1.37611 1.26023 1.86735 1.45997 1.53501 1.31904 1.05524 1.22697 0.98996 0.94959 0.82116 1.24317 1.02604 0.94861 0.92604 1.68792 1.24541 1.17720 1.04589 1.22497 0.95191 0.98307 0.96087 1.19644 0.83824 0.89378 0.84098 1.90537 1.54379 1.26719 1.73983 1.41851 1.37760 1.14295 1.26497 1.19658 1.22240 0.93732 1.07205 0.87998 1.25243 0.96599 0.97740 0.98337 1.69603 1.29020 1.22699 1.33209 0.85917 0.78257 0.80569 0.79481 1.19935 1.20992 1.19887 1.24396 0.96494 1.03157 0.89793 0.90949 0.92063 0.91796 0.90072 0.89934 0.86049 0.86159 0.86268 0.86125 0.85946 0.76554 0.85278 0.88902 0.91164 0.89265 0.92273 0.77587 0.91882 0.91245 0.88880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 8.66 37.16 0.32 -0.59 16 2 C -0.10 -0.75 2.71 -91.77 -0.25 -1.00 16 3 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 4 C -0.06 -0.50 4.19 -27.88 -0.12 -0.62 16 5 C -0.08 -0.57 4.71 -104.62 -0.49 -1.06 16 6 C -0.12 -0.81 9.70 -39.58 -0.38 -1.20 16 7 C -0.12 -0.76 10.05 -39.58 -0.40 -1.16 16 8 C -0.13 -0.79 10.05 -39.58 -0.40 -1.19 16 9 C -0.12 -0.77 10.05 -39.58 -0.40 -1.17 16 10 C -0.11 -0.79 7.96 -39.58 -0.32 -1.11 16 11 C 0.52 5.39 7.15 -10.98 -0.08 5.31 16 12 O -0.54 -7.80 15.51 5.56 0.09 -7.72 16 13 N -0.72 -6.55 5.28 -53.54 -0.28 -6.83 16 14 C 0.12 1.40 4.59 -67.72 -0.31 1.09 16 15 C -0.01 -0.16 7.45 -7.55 -0.06 -0.22 16 16 N -0.43 -7.15 5.82 -246.13 -1.43 -8.59 16 17 C 0.01 0.20 5.30 -4.98 -0.03 0.17 16 18 C 0.45 10.71 7.85 -10.98 -0.09 10.63 16 19 O -0.57 -16.12 16.01 5.54 0.09 -16.03 16 20 N -0.57 -14.47 5.29 -10.96 -0.06 -14.53 16 21 C -0.30 -8.43 9.68 -14.93 -0.14 -8.57 16 22 H 0.10 3.02 7.16 -52.48 -0.38 2.65 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.60 13.05 55.50 0.72 -23.88 16 25 Si 0.93 21.23 29.55 -169.99 -5.02 16.21 16 26 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 28 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 29 C -0.01 -0.12 7.52 -7.56 -0.06 -0.18 16 30 H 0.07 0.41 6.27 -51.92 -0.33 0.09 16 31 H 0.06 0.32 7.56 -51.93 -0.39 -0.07 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.71 8.09 -51.93 -0.42 0.29 16 34 H 0.08 0.72 7.90 -51.92 -0.41 0.31 16 35 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 36 H 0.12 0.55 8.06 -52.48 -0.42 0.13 16 37 H 0.12 0.53 8.06 -52.48 -0.42 0.11 16 38 H 0.12 0.57 8.06 -52.49 -0.42 0.14 16 39 H 0.12 0.72 8.04 -52.49 -0.42 0.30 16 40 H 0.40 2.54 8.17 -40.82 -0.33 2.20 16 41 H 0.13 1.78 7.46 -51.93 -0.39 1.39 16 42 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.07 0.65 7.90 -51.93 -0.41 0.24 16 44 H 0.09 1.39 8.08 -51.93 -0.42 0.97 16 45 H 0.06 0.90 7.30 -51.93 -0.38 0.52 16 46 H 0.39 9.45 7.90 -40.82 -0.32 9.13 16 47 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 48 H 0.07 0.91 7.42 -51.93 -0.39 0.53 16 49 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 LS Contribution 407.30 15.07 6.14 6.14 Total: -1.00 -34.81 407.30 -10.55 -45.35 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: -7.50 Total: 10.23 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: -3.29 Total: -0.36 kcal Atomic # 7 Polarization: -52.77 SS G_CDS: -1.05 Total: -53.82 kcal Atomic # 8 Polarization: -23.92 SS G_CDS: 0.17 Total: -23.75 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -34.81 -10.55 -45.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665232496.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.799 kcal (2) G-P(sol) polarization free energy of solvation -34.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds