Wall clock time and date at job start Wed Apr 1 2020 04:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47122 * 2 1 4 4 C 1.52999 * 109.46872 * 120.00371 * 2 1 3 5 5 C 1.50699 * 109.47059 * 294.99348 * 4 2 1 6 6 C 1.38231 * 119.99968 * 269.73004 * 5 4 2 7 7 C 1.38241 * 119.99482 * 179.76750 * 6 5 4 8 8 C 1.38230 * 120.00295 * 0.50546 * 7 6 5 9 9 C 1.38242 * 119.99902 * 359.75099 * 8 7 6 10 10 C 1.38234 * 120.00009 * 359.97438 * 9 8 7 11 11 C 1.50701 * 109.46565 * 239.99863 * 2 1 3 12 12 O 1.21281 * 119.99905 * 239.99845 * 11 2 1 13 13 N 1.34777 * 119.99991 * 60.00605 * 11 2 1 14 14 C 1.46502 * 119.99942 * 179.97438 * 13 11 2 15 15 C 1.53513 * 114.16704 * 204.99849 * 14 13 11 16 16 N 1.47484 * 87.93060 * 220.32609 * 15 14 13 17 17 C 1.46895 * 110.99756 * 138.70311 * 16 15 14 18 18 C 1.50706 * 109.47182 * 170.00145 * 17 16 15 19 19 O 1.21297 * 119.99667 * 0.02562 * 18 17 16 20 20 N 1.34773 * 120.00081 * 179.72734 * 18 17 16 21 21 C 1.37095 * 119.99878 * 180.02562 * 20 18 17 22 22 H 1.08004 * 120.00160 * 359.97438 * 21 20 18 23 23 C 1.38950 * 120.00380 * 179.97438 * 21 20 18 24 24 N 1.31412 * 119.99401 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00554 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.46783 * 60.00161 * 25 23 21 27 27 H 1.48496 * 109.47291 * 180.02562 * 25 23 21 28 28 H 1.48496 * 109.46865 * 300.00343 * 25 23 21 29 29 C 1.47477 * 87.83167 * 27.01125 * 16 15 14 30 30 H 1.09007 * 109.46832 * 299.99938 * 1 2 3 31 31 H 1.08996 * 109.47108 * 59.99425 * 1 2 3 32 32 H 1.08998 * 109.47122 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47536 * 54.99955 * 4 2 1 34 34 H 1.09008 * 109.46893 * 174.99902 * 4 2 1 35 35 H 1.07996 * 120.00429 * 0.02562 * 6 5 4 36 36 H 1.08005 * 119.99778 * 180.23037 * 7 6 5 37 37 H 1.08005 * 120.00259 * 179.72542 * 8 7 6 38 38 H 1.07998 * 119.99974 * 179.97438 * 9 8 7 39 39 H 1.07998 * 120.00191 * 179.97438 * 10 9 8 40 40 H 0.96992 * 120.00120 * 359.97438 * 13 11 2 41 41 H 1.09003 * 113.37948 * 338.07305 * 14 13 11 42 42 H 1.09005 * 113.47855 * 105.56484 * 15 14 13 43 43 H 1.08997 * 113.53455 * 335.10065 * 15 14 13 44 44 H 1.09001 * 109.47613 * 50.00491 * 17 16 15 45 45 H 1.08998 * 109.47678 * 290.00386 * 17 16 15 46 46 H 0.96998 * 120.00525 * 359.97438 * 20 18 17 47 47 H 0.97004 * 120.00112 * 179.97438 * 24 23 21 48 48 H 1.09000 * 113.48071 * 87.76093 * 29 16 15 49 49 H 1.09004 * 113.47566 * 218.21901 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 0.0570 2.4766 6 6 2.4841 1.0289 2.9825 7 6 2.1162 1.7462 4.1056 8 6 0.9105 1.4842 4.7287 9 6 0.0701 0.5085 4.2258 10 6 0.4354 -0.2048 3.0995 11 6 2.0322 -0.7105 -1.2305 12 8 2.7295 -1.6966 -1.1192 13 7 1.7067 -0.2499 -2.4546 14 6 2.1953 -0.9403 -3.6508 15 6 2.2896 -0.0484 -4.8967 16 7 1.7705 -1.1832 -5.6827 17 6 0.7894 -0.7295 -6.6774 18 6 0.4661 -1.8624 -7.6172 19 8 1.0002 -2.9418 -7.4722 20 7 -0.4208 -1.6780 -8.6151 21 6 -0.7152 -2.7088 -9.4697 22 1 -0.2361 -3.6685 -9.3435 23 6 -1.6300 -2.5190 -10.4981 24 7 -2.2134 -1.3514 -10.6513 25 14 -2.0307 -3.9232 -11.6630 26 1 -2.5898 -5.0622 -10.8914 27 1 -3.0274 -3.4665 -12.6646 28 1 -0.7930 -4.3571 -12.3594 29 6 1.1005 -1.6538 -4.4561 30 1 -0.3633 0.5139 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6054 -1.7199 1.2951 34 1 3.1264 -0.7996 1.2055 35 1 3.4279 1.2309 2.4980 36 1 2.7730 2.5082 4.4987 37 1 0.6251 2.0415 5.6087 38 1 -0.8717 0.3036 4.7129 39 1 -0.2209 -0.9673 2.7068 40 1 1.1488 0.5385 -2.5436 41 1 3.0823 -1.5470 -3.4681 42 1 3.3115 0.2282 -5.1564 43 1 1.6148 0.8072 -4.8716 44 1 1.2046 0.1045 -7.2432 45 1 -0.1201 -0.4075 -6.1702 46 1 -0.8514 -0.8163 -8.7282 47 1 -2.8518 -1.2187 -11.3695 48 1 0.1078 -1.2271 -4.3124 49 1 1.1144 -2.7378 -4.3423 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665232496.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:43 Heat of formation + Delta-G solvation = -41.997078 kcal Electronic energy + Delta-G solvation = -28643.817959 eV Core-core repulsion = 24570.461528 eV Total energy + Delta-G solvation = -4073.356431 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.80312 -40.75570 -39.95950 -39.43776 -35.97636 -35.91694 -35.11241 -33.29346 -32.00479 -31.71410 -30.88275 -27.65869 -27.39935 -26.96369 -25.66498 -24.18906 -23.33556 -22.07881 -21.41127 -21.07937 -20.62052 -19.91056 -18.26611 -17.92946 -17.61427 -17.41750 -16.68591 -16.55928 -16.43538 -16.16167 -15.90631 -15.85565 -15.64410 -15.40518 -14.89074 -14.62103 -14.31055 -14.19823 -13.94736 -13.85086 -13.69186 -13.55171 -13.49746 -13.25296 -13.05800 -13.01734 -12.74850 -12.45328 -12.33799 -12.20312 -12.12578 -12.07828 -11.88260 -11.79270 -11.72822 -11.50295 -10.85275 -10.39972 -10.10074 -10.01360 -9.78444 -9.75310 -9.55234 -8.47096 -5.95696 0.47874 0.55133 1.39021 1.40833 1.51576 1.58614 2.03772 2.06421 2.29552 2.86900 2.94139 3.18890 3.30326 3.52086 3.59413 3.77780 3.87598 3.92050 4.07508 4.13634 4.16404 4.23359 4.27050 4.28144 4.36551 4.38788 4.44375 4.52623 4.59325 4.69055 4.70729 4.78304 4.83345 4.89176 4.93617 4.95816 5.12288 5.22486 5.24555 5.30061 5.32072 5.39831 5.43385 5.63445 5.68872 5.77726 5.87087 6.06562 6.17472 6.53154 6.61010 7.13129 7.23917 7.56491 8.13912 8.69965 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.025506 B = 0.001538 C = 0.001505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.497262 B =18198.339938 C =18605.741705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 H 0.121 0.879 4 C -0.060 4.060 5 C -0.085 4.085 6 C -0.128 4.128 7 C -0.126 4.126 8 C -0.133 4.133 9 C -0.127 4.127 10 C -0.124 4.124 11 C 0.517 3.483 12 O -0.583 6.583 13 N -0.702 5.702 14 C 0.132 3.868 15 C 0.003 3.997 16 N -0.476 5.476 17 C 0.026 3.974 18 C 0.438 3.562 19 O -0.623 6.623 20 N -0.574 5.574 21 C -0.337 4.337 22 H 0.075 0.925 23 C -0.010 4.010 24 N -0.918 5.918 25 Si 0.991 3.009 26 H -0.273 1.273 27 H -0.268 1.268 28 H -0.273 1.273 29 C -0.012 4.012 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.052 0.948 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.129 0.871 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.127 0.873 40 H 0.418 0.582 41 H 0.105 0.895 42 H 0.102 0.898 43 H 0.107 0.893 44 H 0.115 0.885 45 H 0.089 0.911 46 H 0.397 0.603 47 H 0.278 0.722 48 H 0.089 0.911 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.300 14.743 29.243 32.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 H 0.139 0.861 4 C -0.097 4.097 5 C -0.085 4.085 6 C -0.146 4.146 7 C -0.144 4.144 8 C -0.150 4.150 9 C -0.145 4.145 10 C -0.142 4.142 11 C 0.305 3.695 12 O -0.462 6.462 13 N -0.354 5.354 14 C 0.025 3.975 15 C -0.126 4.126 16 N -0.199 5.199 17 C -0.106 4.106 18 C 0.226 3.774 19 O -0.508 6.508 20 N -0.212 5.212 21 C -0.466 4.466 22 H 0.093 0.907 23 C -0.210 4.210 24 N -0.559 5.559 25 Si 0.815 3.185 26 H -0.199 1.199 27 H -0.192 1.192 28 H -0.199 1.199 29 C -0.142 4.142 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.147 0.853 36 H 0.155 0.845 37 H 0.155 0.845 38 H 0.154 0.846 39 H 0.145 0.855 40 H 0.257 0.743 41 H 0.123 0.877 42 H 0.120 0.880 43 H 0.125 0.875 44 H 0.133 0.867 45 H 0.107 0.893 46 H 0.231 0.769 47 H 0.087 0.913 48 H 0.107 0.893 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.441 12.975 28.853 31.947 hybrid contribution -1.233 0.160 -0.714 1.434 sum 3.209 13.136 28.139 31.219 Atomic orbital electron populations 1.21877 0.91476 1.02731 1.04141 1.21250 0.98635 1.01180 0.90276 0.86147 1.20330 1.01355 0.97788 0.90263 1.19839 0.95039 0.97055 0.96593 1.21273 0.99963 0.96213 0.97121 1.21420 0.97215 0.99927 0.95811 1.21461 0.94661 0.98296 1.00624 1.21425 1.00473 0.96266 0.96332 1.21256 0.96364 1.00345 0.96261 1.21258 0.78781 0.83853 0.85622 1.90715 1.39839 1.28269 1.87385 1.45804 1.53224 1.32015 1.04329 1.22263 0.97080 0.94857 0.83309 1.24331 1.03710 0.94315 0.90226 1.68710 1.24870 1.20812 1.05493 1.22376 0.97074 0.95671 0.95430 1.20883 0.82069 0.90519 0.83949 1.90503 1.55781 1.29405 1.75151 1.41910 1.38440 1.13967 1.26841 1.19604 1.23857 0.93867 1.09303 0.90721 1.25986 0.95753 1.00177 0.99080 1.69653 1.28887 1.23761 1.33613 0.85020 0.78198 0.77688 0.77615 1.19880 1.19214 1.19875 1.24433 0.98269 1.01398 0.90087 0.90138 0.90471 0.92928 0.91571 0.91236 0.85326 0.84494 0.84480 0.84598 0.85510 0.74348 0.87676 0.87957 0.87511 0.86743 0.89325 0.76886 0.91258 0.89336 0.92546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 8.66 71.98 0.62 -0.88 16 2 C -0.09 -1.21 2.71 -11.54 -0.03 -1.24 16 3 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 4 C -0.06 -0.94 4.19 29.85 0.13 -0.82 16 5 C -0.09 -1.18 4.71 -19.87 -0.09 -1.28 16 6 C -0.13 -1.62 9.70 22.27 0.22 -1.41 16 7 C -0.13 -1.39 10.05 22.27 0.22 -1.17 16 8 C -0.13 -1.41 10.05 22.27 0.22 -1.18 16 9 C -0.13 -1.43 10.05 22.27 0.22 -1.21 16 10 C -0.12 -1.60 7.96 22.27 0.18 -1.42 16 11 C 0.52 10.37 7.15 87.66 0.63 11.00 16 12 O -0.58 -17.53 15.51 -3.03 -0.05 -17.58 16 13 N -0.70 -11.42 5.28 -441.69 -2.33 -13.75 16 14 C 0.13 3.00 4.59 45.44 0.21 3.20 16 15 C 0.00 0.06 7.45 83.57 0.62 0.69 16 16 N -0.48 -15.19 5.82 -932.63 -5.43 -20.62 16 17 C 0.03 0.87 5.30 85.56 0.45 1.32 16 18 C 0.44 21.30 7.85 87.66 0.69 21.99 16 19 O -0.62 -36.29 16.01 -3.08 -0.05 -36.34 16 20 N -0.57 -29.64 5.29 -306.98 -1.62 -31.26 16 21 C -0.34 -19.44 9.68 84.04 0.81 -18.62 16 22 H 0.07 4.64 7.16 -2.91 -0.02 4.62 16 23 C -0.01 -0.54 5.50 84.93 0.47 -0.07 16 24 N -0.92 -49.29 13.05 21.66 0.28 -49.01 16 25 Si 0.99 43.34 29.55 68.60 2.03 45.37 16 26 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 27 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 28 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 29 C -0.01 -0.33 7.52 83.57 0.63 0.30 16 30 H 0.08 0.75 6.27 -2.38 -0.01 0.73 16 31 H 0.08 0.56 7.56 -2.39 -0.02 0.54 16 32 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.07 1.22 8.09 -2.39 -0.02 1.20 16 34 H 0.07 1.26 7.90 -2.38 -0.02 1.24 16 35 H 0.13 1.35 8.06 -2.91 -0.02 1.33 16 36 H 0.14 0.97 8.06 -2.91 -0.02 0.95 16 37 H 0.14 0.89 8.06 -2.91 -0.02 0.87 16 38 H 0.14 1.03 8.06 -2.91 -0.02 1.00 16 39 H 0.13 1.43 8.04 -2.91 -0.02 1.40 16 40 H 0.42 3.79 8.17 -92.71 -0.76 3.03 16 41 H 0.11 2.97 7.46 -2.39 -0.02 2.96 16 42 H 0.10 1.93 8.14 -2.38 -0.02 1.91 16 43 H 0.11 1.42 7.90 -2.39 -0.02 1.40 16 44 H 0.11 3.21 8.08 -2.39 -0.02 3.19 16 45 H 0.09 2.41 7.30 -2.39 -0.02 2.40 16 46 H 0.40 19.12 7.90 -92.71 -0.73 18.39 16 47 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 48 H 0.09 2.16 7.42 -2.39 -0.02 2.14 16 49 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 Total: -1.00 -78.86 407.30 -1.49 -80.35 By element: Atomic # 1 Polarization: 34.15 SS G_CDS: -0.52 Total: 33.64 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: 6.20 Total: 9.20 kcal Atomic # 7 Polarization: -105.54 SS G_CDS: -9.10 Total: -114.64 kcal Atomic # 8 Polarization: -53.82 SS G_CDS: -0.10 Total: -53.92 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -78.86 -1.49 -80.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665232496.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.352 kcal (2) G-P(sol) polarization free energy of solvation -78.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds