Wall clock time and date at job start Wed Apr 1 2020 04:10:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 H 1.08998 * 109.47122 * 2 1
4 4 C 1.52999 * 109.46872 * 120.00371 * 2 1 3
5 5 C 1.50699 * 109.47059 * 294.99348 * 4 2 1
6 6 C 1.38231 * 119.99968 * 269.73004 * 5 4 2
7 7 C 1.38241 * 119.99482 * 179.76750 * 6 5 4
8 8 C 1.38230 * 120.00295 * 0.50546 * 7 6 5
9 9 C 1.38242 * 119.99902 * 359.75099 * 8 7 6
10 10 C 1.38234 * 120.00009 * 359.97438 * 9 8 7
11 11 C 1.50701 * 109.46565 * 239.99863 * 2 1 3
12 12 O 1.21281 * 119.99905 * 239.99845 * 11 2 1
13 13 N 1.34777 * 119.99991 * 60.00605 * 11 2 1
14 14 C 1.46502 * 119.99942 * 179.97438 * 13 11 2
15 15 C 1.53513 * 114.16704 * 204.99849 * 14 13 11
16 16 N 1.47484 * 87.93060 * 220.32609 * 15 14 13
17 17 C 1.46895 * 110.99756 * 138.70311 * 16 15 14
18 18 C 1.50706 * 109.47182 * 170.00145 * 17 16 15
19 19 O 1.21297 * 119.99667 * 0.02562 * 18 17 16
20 20 N 1.34773 * 120.00081 * 179.72734 * 18 17 16
21 21 C 1.37095 * 119.99878 * 180.02562 * 20 18 17
22 22 H 1.08004 * 120.00160 * 359.97438 * 21 20 18
23 23 C 1.38950 * 120.00380 * 179.97438 * 21 20 18
24 24 N 1.31412 * 119.99401 * 359.97438 * 23 21 20
25 25 Si 1.86800 * 120.00554 * 179.97438 * 23 21 20
26 26 H 1.48497 * 109.46783 * 60.00161 * 25 23 21
27 27 H 1.48496 * 109.47291 * 180.02562 * 25 23 21
28 28 H 1.48496 * 109.46865 * 300.00343 * 25 23 21
29 29 C 1.47477 * 87.83167 * 27.01125 * 16 15 14
30 30 H 1.09007 * 109.46832 * 299.99938 * 1 2 3
31 31 H 1.08996 * 109.47108 * 59.99425 * 1 2 3
32 32 H 1.08998 * 109.47122 * 179.97438 * 1 2 3
33 33 H 1.09003 * 109.47536 * 54.99955 * 4 2 1
34 34 H 1.09008 * 109.46893 * 174.99902 * 4 2 1
35 35 H 1.07996 * 120.00429 * 0.02562 * 6 5 4
36 36 H 1.08005 * 119.99778 * 180.23037 * 7 6 5
37 37 H 1.08005 * 120.00259 * 179.72542 * 8 7 6
38 38 H 1.07998 * 119.99974 * 179.97438 * 9 8 7
39 39 H 1.07998 * 120.00191 * 179.97438 * 10 9 8
40 40 H 0.96992 * 120.00120 * 359.97438 * 13 11 2
41 41 H 1.09003 * 113.37948 * 338.07305 * 14 13 11
42 42 H 1.09005 * 113.47855 * 105.56484 * 15 14 13
43 43 H 1.08997 * 113.53455 * 335.10065 * 15 14 13
44 44 H 1.09001 * 109.47613 * 50.00491 * 17 16 15
45 45 H 1.08998 * 109.47678 * 290.00386 * 17 16 15
46 46 H 0.96998 * 120.00525 * 359.97438 * 20 18 17
47 47 H 0.97004 * 120.00112 * 179.97438 * 24 23 21
48 48 H 1.09000 * 113.48071 * 87.76093 * 29 16 15
49 49 H 1.09004 * 113.47566 * 218.21901 * 29 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0400 -0.7213 1.2492
5 6 1.6414 0.0570 2.4766
6 6 2.4841 1.0289 2.9825
7 6 2.1162 1.7462 4.1056
8 6 0.9105 1.4842 4.7287
9 6 0.0701 0.5085 4.2258
10 6 0.4354 -0.2048 3.0995
11 6 2.0322 -0.7105 -1.2305
12 8 2.7295 -1.6966 -1.1192
13 7 1.7067 -0.2499 -2.4546
14 6 2.1953 -0.9403 -3.6508
15 6 2.2896 -0.0484 -4.8967
16 7 1.7705 -1.1832 -5.6827
17 6 0.7894 -0.7295 -6.6774
18 6 0.4661 -1.8624 -7.6172
19 8 1.0002 -2.9418 -7.4722
20 7 -0.4208 -1.6780 -8.6151
21 6 -0.7152 -2.7088 -9.4697
22 1 -0.2361 -3.6685 -9.3435
23 6 -1.6300 -2.5190 -10.4981
24 7 -2.2134 -1.3514 -10.6513
25 14 -2.0307 -3.9232 -11.6630
26 1 -2.5898 -5.0622 -10.8914
27 1 -3.0274 -3.4665 -12.6646
28 1 -0.7930 -4.3571 -12.3594
29 6 1.1005 -1.6538 -4.4561
30 1 -0.3633 0.5139 0.8901
31 1 -0.3633 0.5139 -0.8899
32 1 -0.3633 -1.0276 -0.0005
33 1 1.6054 -1.7199 1.2951
34 1 3.1264 -0.7996 1.2055
35 1 3.4279 1.2309 2.4980
36 1 2.7730 2.5082 4.4987
37 1 0.6251 2.0415 5.6087
38 1 -0.8717 0.3036 4.7129
39 1 -0.2209 -0.9673 2.7068
40 1 1.1488 0.5385 -2.5436
41 1 3.0823 -1.5470 -3.4681
42 1 3.3115 0.2282 -5.1564
43 1 1.6148 0.8072 -4.8716
44 1 1.2046 0.1045 -7.2432
45 1 -0.1201 -0.4075 -6.1702
46 1 -0.8514 -0.8163 -8.7282
47 1 -2.8518 -1.2187 -11.3695
48 1 0.1078 -1.2271 -4.3124
49 1 1.1144 -2.7378 -4.3423
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001665232496.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:10:43
Heat of formation + Delta-G solvation = -41.997078 kcal
Electronic energy + Delta-G solvation = -28643.817959 eV
Core-core repulsion = 24570.461528 eV
Total energy + Delta-G solvation = -4073.356431 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.184 amu
Computer time = 1.15 seconds
Orbital eigenvalues (eV)
-41.80312 -40.75570 -39.95950 -39.43776 -35.97636 -35.91694 -35.11241 -33.29346
-32.00479 -31.71410 -30.88275 -27.65869 -27.39935 -26.96369 -25.66498 -24.18906
-23.33556 -22.07881 -21.41127 -21.07937 -20.62052 -19.91056 -18.26611 -17.92946
-17.61427 -17.41750 -16.68591 -16.55928 -16.43538 -16.16167 -15.90631 -15.85565
-15.64410 -15.40518 -14.89074 -14.62103 -14.31055 -14.19823 -13.94736 -13.85086
-13.69186 -13.55171 -13.49746 -13.25296 -13.05800 -13.01734 -12.74850 -12.45328
-12.33799 -12.20312 -12.12578 -12.07828 -11.88260 -11.79270 -11.72822 -11.50295
-10.85275 -10.39972 -10.10074 -10.01360 -9.78444 -9.75310 -9.55234 -8.47096
-5.95696 0.47874 0.55133 1.39021 1.40833 1.51576 1.58614 2.03772
2.06421 2.29552 2.86900 2.94139 3.18890 3.30326 3.52086 3.59413
3.77780 3.87598 3.92050 4.07508 4.13634 4.16404 4.23359 4.27050
4.28144 4.36551 4.38788 4.44375 4.52623 4.59325 4.69055 4.70729
4.78304 4.83345 4.89176 4.93617 4.95816 5.12288 5.22486 5.24555
5.30061 5.32072 5.39831 5.43385 5.63445 5.68872 5.77726 5.87087
6.06562 6.17472 6.53154 6.61010 7.13129 7.23917 7.56491 8.13912
8.69965
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.025506 B = 0.001538 C = 0.001505
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1097.497262 B =18198.339938 C =18605.741705
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.092 4.092
3 H 0.121 0.879
4 C -0.060 4.060
5 C -0.085 4.085
6 C -0.128 4.128
7 C -0.126 4.126
8 C -0.133 4.133
9 C -0.127 4.127
10 C -0.124 4.124
11 C 0.517 3.483
12 O -0.583 6.583
13 N -0.702 5.702
14 C 0.132 3.868
15 C 0.003 3.997
16 N -0.476 5.476
17 C 0.026 3.974
18 C 0.438 3.562
19 O -0.623 6.623
20 N -0.574 5.574
21 C -0.337 4.337
22 H 0.075 0.925
23 C -0.010 4.010
24 N -0.918 5.918
25 Si 0.991 3.009
26 H -0.273 1.273
27 H -0.268 1.268
28 H -0.273 1.273
29 C -0.012 4.012
30 H 0.080 0.920
31 H 0.076 0.924
32 H 0.052 0.948
33 H 0.066 0.934
34 H 0.069 0.931
35 H 0.129 0.871
36 H 0.137 0.863
37 H 0.137 0.863
38 H 0.136 0.864
39 H 0.127 0.873
40 H 0.418 0.582
41 H 0.105 0.895
42 H 0.102 0.898
43 H 0.107 0.893
44 H 0.115 0.885
45 H 0.089 0.911
46 H 0.397 0.603
47 H 0.278 0.722
48 H 0.089 0.911
49 H 0.056 0.944
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.300 14.743 29.243 32.915
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.113 4.113
3 H 0.139 0.861
4 C -0.097 4.097
5 C -0.085 4.085
6 C -0.146 4.146
7 C -0.144 4.144
8 C -0.150 4.150
9 C -0.145 4.145
10 C -0.142 4.142
11 C 0.305 3.695
12 O -0.462 6.462
13 N -0.354 5.354
14 C 0.025 3.975
15 C -0.126 4.126
16 N -0.199 5.199
17 C -0.106 4.106
18 C 0.226 3.774
19 O -0.508 6.508
20 N -0.212 5.212
21 C -0.466 4.466
22 H 0.093 0.907
23 C -0.210 4.210
24 N -0.559 5.559
25 Si 0.815 3.185
26 H -0.199 1.199
27 H -0.192 1.192
28 H -0.199 1.199
29 C -0.142 4.142
30 H 0.099 0.901
31 H 0.095 0.905
32 H 0.071 0.929
33 H 0.084 0.916
34 H 0.088 0.912
35 H 0.147 0.853
36 H 0.155 0.845
37 H 0.155 0.845
38 H 0.154 0.846
39 H 0.145 0.855
40 H 0.257 0.743
41 H 0.123 0.877
42 H 0.120 0.880
43 H 0.125 0.875
44 H 0.133 0.867
45 H 0.107 0.893
46 H 0.231 0.769
47 H 0.087 0.913
48 H 0.107 0.893
49 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges 4.441 12.975 28.853 31.947
hybrid contribution -1.233 0.160 -0.714 1.434
sum 3.209 13.136 28.139 31.219
Atomic orbital electron populations
1.21877 0.91476 1.02731 1.04141 1.21250 0.98635 1.01180 0.90276
0.86147 1.20330 1.01355 0.97788 0.90263 1.19839 0.95039 0.97055
0.96593 1.21273 0.99963 0.96213 0.97121 1.21420 0.97215 0.99927
0.95811 1.21461 0.94661 0.98296 1.00624 1.21425 1.00473 0.96266
0.96332 1.21256 0.96364 1.00345 0.96261 1.21258 0.78781 0.83853
0.85622 1.90715 1.39839 1.28269 1.87385 1.45804 1.53224 1.32015
1.04329 1.22263 0.97080 0.94857 0.83309 1.24331 1.03710 0.94315
0.90226 1.68710 1.24870 1.20812 1.05493 1.22376 0.97074 0.95671
0.95430 1.20883 0.82069 0.90519 0.83949 1.90503 1.55781 1.29405
1.75151 1.41910 1.38440 1.13967 1.26841 1.19604 1.23857 0.93867
1.09303 0.90721 1.25986 0.95753 1.00177 0.99080 1.69653 1.28887
1.23761 1.33613 0.85020 0.78198 0.77688 0.77615 1.19880 1.19214
1.19875 1.24433 0.98269 1.01398 0.90087 0.90138 0.90471 0.92928
0.91571 0.91236 0.85326 0.84494 0.84480 0.84598 0.85510 0.74348
0.87676 0.87957 0.87511 0.86743 0.89325 0.76886 0.91258 0.89336
0.92546
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.50 8.66 71.98 0.62 -0.88 16
2 C -0.09 -1.21 2.71 -11.54 -0.03 -1.24 16
3 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16
4 C -0.06 -0.94 4.19 29.85 0.13 -0.82 16
5 C -0.09 -1.18 4.71 -19.87 -0.09 -1.28 16
6 C -0.13 -1.62 9.70 22.27 0.22 -1.41 16
7 C -0.13 -1.39 10.05 22.27 0.22 -1.17 16
8 C -0.13 -1.41 10.05 22.27 0.22 -1.18 16
9 C -0.13 -1.43 10.05 22.27 0.22 -1.21 16
10 C -0.12 -1.60 7.96 22.27 0.18 -1.42 16
11 C 0.52 10.37 7.15 87.66 0.63 11.00 16
12 O -0.58 -17.53 15.51 -3.03 -0.05 -17.58 16
13 N -0.70 -11.42 5.28 -441.69 -2.33 -13.75 16
14 C 0.13 3.00 4.59 45.44 0.21 3.20 16
15 C 0.00 0.06 7.45 83.57 0.62 0.69 16
16 N -0.48 -15.19 5.82 -932.63 -5.43 -20.62 16
17 C 0.03 0.87 5.30 85.56 0.45 1.32 16
18 C 0.44 21.30 7.85 87.66 0.69 21.99 16
19 O -0.62 -36.29 16.01 -3.08 -0.05 -36.34 16
20 N -0.57 -29.64 5.29 -306.98 -1.62 -31.26 16
21 C -0.34 -19.44 9.68 84.04 0.81 -18.62 16
22 H 0.07 4.64 7.16 -2.91 -0.02 4.62 16
23 C -0.01 -0.54 5.50 84.93 0.47 -0.07 16
24 N -0.92 -49.29 13.05 21.66 0.28 -49.01 16
25 Si 0.99 43.34 29.55 68.60 2.03 45.37 16
26 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16
27 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16
28 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16
29 C -0.01 -0.33 7.52 83.57 0.63 0.30 16
30 H 0.08 0.75 6.27 -2.38 -0.01 0.73 16
31 H 0.08 0.56 7.56 -2.39 -0.02 0.54 16
32 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16
33 H 0.07 1.22 8.09 -2.39 -0.02 1.20 16
34 H 0.07 1.26 7.90 -2.38 -0.02 1.24 16
35 H 0.13 1.35 8.06 -2.91 -0.02 1.33 16
36 H 0.14 0.97 8.06 -2.91 -0.02 0.95 16
37 H 0.14 0.89 8.06 -2.91 -0.02 0.87 16
38 H 0.14 1.03 8.06 -2.91 -0.02 1.00 16
39 H 0.13 1.43 8.04 -2.91 -0.02 1.40 16
40 H 0.42 3.79 8.17 -92.71 -0.76 3.03 16
41 H 0.11 2.97 7.46 -2.39 -0.02 2.96 16
42 H 0.10 1.93 8.14 -2.38 -0.02 1.91 16
43 H 0.11 1.42 7.90 -2.39 -0.02 1.40 16
44 H 0.11 3.21 8.08 -2.39 -0.02 3.19 16
45 H 0.09 2.41 7.30 -2.39 -0.02 2.40 16
46 H 0.40 19.12 7.90 -92.71 -0.73 18.39 16
47 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16
48 H 0.09 2.16 7.42 -2.39 -0.02 2.14 16
49 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16
Total: -1.00 -78.86 407.30 -1.49 -80.35
By element:
Atomic # 1 Polarization: 34.15 SS G_CDS: -0.52 Total: 33.64 kcal
Atomic # 6 Polarization: 3.01 SS G_CDS: 6.20 Total: 9.20 kcal
Atomic # 7 Polarization: -105.54 SS G_CDS: -9.10 Total: -114.64 kcal
Atomic # 8 Polarization: -53.82 SS G_CDS: -0.10 Total: -53.92 kcal
Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal
Total: -78.86 -1.49 -80.35 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001665232496.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 38.352 kcal
(2) G-P(sol) polarization free energy of solvation -78.859 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.507 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.490 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.349 kcal
(6) G-S(sol) free energy of system = (1) + (5) -41.997 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.15 seconds