Wall clock time and date at job start Wed Apr 1 2020 03:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47339 * 2 1 4 4 C 1.50694 * 109.47174 * 239.99710 * 2 1 3 5 5 O 1.21283 * 120.00363 * 239.99943 * 4 2 1 6 6 N 1.34784 * 119.99988 * 60.00061 * 4 2 1 7 7 C 1.46493 * 119.99864 * 179.72721 * 6 4 2 8 8 C 1.53001 * 109.47084 * 180.02562 * 7 6 4 9 9 H 1.08998 * 112.74846 * 75.76512 * 8 7 6 10 10 C 1.53517 * 113.47815 * 206.62155 * 8 7 6 11 11 C 1.53502 * 83.57589 * 140.78687 * 10 8 7 12 12 N 1.47476 * 87.93375 * 333.97388 * 11 10 8 13 13 C 1.46905 * 110.99888 * 138.70967 * 12 11 10 14 14 C 1.50700 * 109.47463 * 94.02945 * 13 12 11 15 15 O 1.21292 * 119.99643 * 359.97438 * 14 13 12 16 16 N 1.34775 * 119.99685 * 180.02562 * 14 13 12 17 17 C 1.37100 * 119.99687 * 179.97438 * 16 14 13 18 18 H 1.08001 * 120.00044 * 0.02562 * 17 16 14 19 19 C 1.38952 * 119.99766 * 179.97438 * 17 16 14 20 20 N 1.31404 * 120.00153 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99705 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47097 * 60.00153 * 21 19 17 23 23 H 1.48498 * 109.47063 * 180.02562 * 21 19 17 24 24 H 1.48507 * 109.47248 * 300.00337 * 21 19 17 25 25 C 1.50698 * 109.46939 * 119.99737 * 2 1 3 26 26 C 1.38237 * 120.00274 * 59.72992 * 25 2 1 27 27 C 1.38234 * 120.00254 * 179.78824 * 26 25 2 28 28 C 1.38234 * 119.99762 * 0.43381 * 27 26 25 29 29 C 1.38237 * 120.00420 * 359.81623 * 28 27 26 30 30 C 1.38234 * 120.00129 * 239.99801 * 25 2 1 31 31 H 1.08998 * 109.47223 * 299.99995 * 1 2 3 32 32 H 1.08995 * 109.47095 * 60.00224 * 1 2 3 33 33 H 1.09000 * 109.47156 * 180.02562 * 1 2 3 34 34 H 0.97000 * 119.99339 * 0.02562 * 6 4 2 35 35 H 1.09007 * 109.47196 * 299.99538 * 7 6 4 36 36 H 1.09006 * 109.47678 * 59.99732 * 7 6 4 37 37 H 1.08996 * 114.16457 * 254.43734 * 10 8 7 38 38 H 1.09002 * 114.16952 * 27.13321 * 10 8 7 39 39 H 1.09006 * 113.47463 * 219.20784 * 11 10 8 40 40 H 1.08995 * 113.53405 * 88.75253 * 11 10 8 41 41 H 1.08998 * 109.46807 * 214.03009 * 13 12 11 42 42 H 1.08998 * 109.46984 * 334.02295 * 13 12 11 43 43 H 0.96998 * 120.00496 * 359.97438 * 16 14 13 44 44 H 0.97002 * 119.99872 * 179.97438 * 20 19 17 45 45 H 1.08005 * 119.99660 * 359.97438 * 26 25 2 46 46 H 1.07990 * 120.00064 * 180.27446 * 27 26 25 47 47 H 1.08001 * 120.00369 * 179.83478 * 28 27 26 48 48 H 1.07999 * 120.00465 * 179.97438 * 29 28 27 49 49 H 1.08002 * 119.99947 * 359.97438 * 30 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.7296 -1.6965 -1.1191 6 7 1.7067 -0.2500 -2.4546 7 6 2.2000 -0.9372 -3.6506 8 6 1.6895 -0.2164 -4.8999 9 1 2.2247 0.7120 -5.0992 10 6 1.5697 -1.1305 -6.1274 11 6 0.2859 -0.3291 -6.3842 12 7 0.2226 -0.0678 -4.9342 13 6 -0.1723 1.3216 -4.6664 14 6 -1.6644 1.3901 -4.4660 15 8 -2.3331 0.3809 -4.5396 16 7 -2.2557 2.5730 -4.2062 17 6 -3.6131 2.6355 -4.0244 18 1 -4.2085 1.7367 -4.0891 19 6 -4.2228 3.8549 -3.7559 20 7 -3.4983 4.9483 -3.6768 21 14 -6.0724 3.9401 -3.5090 22 1 -6.4580 3.0851 -2.3577 23 1 -6.4715 5.3447 -3.2387 24 1 -6.7582 3.4583 -4.7350 25 6 2.0323 -0.7103 1.2305 26 6 1.6937 -2.0322 1.4522 27 6 2.1581 -2.6850 2.5787 28 6 2.9536 -2.0135 3.4881 29 6 3.2880 -0.6902 3.2691 30 6 2.8270 -0.0386 2.1404 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.1494 0.5389 -2.5435 35 1 3.2900 -0.9324 -3.6489 36 1 1.8412 -1.9665 -3.6524 37 1 2.3482 -0.9780 -6.8750 38 1 1.4002 -2.1802 -5.8874 39 1 -0.5398 -0.9381 -6.7522 40 1 0.4456 0.5691 -6.9807 41 1 0.3317 1.6756 -3.7671 42 1 0.1100 1.9489 -5.5119 43 1 -1.7209 3.3802 -4.1477 44 1 -3.9239 5.7997 -3.4897 45 1 1.0689 -2.5557 0.7437 46 1 1.8972 -3.7189 2.7496 47 1 3.3142 -2.5227 4.3696 48 1 3.9091 -0.1653 3.9798 49 1 3.0883 0.9953 1.9692 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670713891.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:13 Heat of formation + Delta-G solvation = -11.431918 kcal Electronic energy + Delta-G solvation = -30137.613885 eV Core-core repulsion = 26065.582859 eV Total energy + Delta-G solvation = -4072.031027 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.65333 -40.00969 -38.58472 -37.79217 -34.51463 -34.21017 -33.93458 -31.42900 -30.94491 -30.73541 -29.64529 -28.11073 -25.87667 -24.79416 -23.80458 -23.22502 -22.61403 -21.65309 -20.14337 -19.53487 -19.32909 -17.95280 -17.30834 -16.92353 -16.21876 -16.09886 -15.70776 -15.47575 -15.07571 -15.02004 -14.64084 -14.54191 -14.18400 -13.85900 -13.73977 -13.69078 -13.43724 -13.33295 -12.97997 -12.67438 -12.48133 -12.23047 -12.19722 -11.95058 -11.64711 -11.61174 -11.56891 -11.35147 -11.08929 -11.01755 -10.96323 -10.90924 -10.55596 -10.47276 -10.24650 -9.69543 -9.52989 -9.00840 -8.90754 -8.87020 -8.75504 -8.26206 -8.00458 -6.45646 -3.86466 1.29207 1.39832 2.69416 3.15067 3.17360 3.23325 3.27573 3.78056 3.83140 3.91866 4.18909 4.39537 4.48565 4.66526 4.71465 4.87125 4.93849 4.94642 4.99582 5.06035 5.13610 5.14221 5.17314 5.26827 5.34644 5.41218 5.44522 5.52731 5.56980 5.61518 5.70290 5.76318 5.79860 5.85702 5.91780 5.95346 6.01318 6.13216 6.18152 6.20062 6.37660 6.40673 6.47617 6.54988 6.58798 6.95798 7.11366 7.51340 7.53563 8.01514 8.26744 8.57548 9.14564 9.49686 10.02009 10.71973 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.008861 B = 0.002972 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3159.136831 B = 9417.636089 C =11851.864573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.073 4.073 3 H 0.103 0.897 4 C 0.519 3.481 5 O -0.538 6.538 6 N -0.720 5.720 7 C 0.142 3.858 8 C 0.003 3.997 9 H 0.082 0.918 10 C -0.133 4.133 11 C 0.005 3.995 12 N -0.432 5.432 13 C 0.007 3.993 14 C 0.445 3.555 15 O -0.571 6.571 16 N -0.566 5.566 17 C -0.299 4.299 18 H 0.102 0.898 19 C 0.023 3.977 20 N -0.902 5.902 21 Si 0.929 3.071 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.274 1.274 25 C -0.062 4.062 26 C -0.083 4.083 27 C -0.123 4.123 28 C -0.123 4.123 29 C -0.125 4.125 30 C -0.113 4.113 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.401 0.599 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.068 0.932 41 H 0.079 0.921 42 H 0.062 0.938 43 H 0.391 0.609 44 H 0.272 0.728 45 H 0.119 0.881 46 H 0.120 0.880 47 H 0.118 0.882 48 H 0.120 0.880 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.316 -7.041 5.717 17.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.094 4.094 3 H 0.121 0.879 4 C 0.305 3.695 5 O -0.415 6.415 6 N -0.372 5.372 7 C 0.018 3.982 8 C -0.107 4.107 9 H 0.100 0.900 10 C -0.171 4.171 11 C -0.124 4.124 12 N -0.154 5.154 13 C -0.126 4.126 14 C 0.230 3.770 15 O -0.454 6.454 16 N -0.203 5.203 17 C -0.428 4.428 18 H 0.120 0.880 19 C -0.178 4.178 20 N -0.544 5.544 21 Si 0.756 3.244 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.199 1.199 25 C -0.063 4.063 26 C -0.101 4.101 27 C -0.141 4.141 28 C -0.141 4.141 29 C -0.143 4.143 30 C -0.132 4.132 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.237 0.763 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.114 0.886 39 H 0.108 0.892 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.080 0.920 43 H 0.224 0.776 44 H 0.082 0.918 45 H 0.137 0.863 46 H 0.138 0.862 47 H 0.136 0.864 48 H 0.138 0.862 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 14.839 -8.609 6.225 18.250 hybrid contribution -0.412 1.841 -0.396 1.928 sum 14.427 -6.768 5.830 16.969 Atomic orbital electron populations 1.21810 0.91194 1.03393 1.03572 1.20323 0.98263 1.00065 0.90779 0.87893 1.20441 0.80014 0.84602 0.84432 1.90697 1.37948 1.26106 1.86755 1.45932 1.53430 1.32494 1.05341 1.21294 0.98000 0.96752 0.82176 1.23789 0.92101 0.99316 0.95491 0.90009 1.23153 0.97925 0.99745 0.96306 1.23752 0.98380 0.99723 0.90583 1.68866 1.09771 1.21564 1.15222 1.22578 0.97621 0.90963 1.01395 1.19596 0.88065 0.84606 0.84780 1.90543 1.64757 1.34625 1.55504 1.41866 1.08398 1.07590 1.62439 1.19631 0.82566 0.95334 1.45289 0.88027 1.25233 1.00443 0.94803 0.97334 1.69593 1.36476 0.99024 1.49293 0.85944 0.82264 0.77085 0.79109 1.19850 1.20970 1.19932 1.19329 0.97827 0.94421 0.94711 1.20943 0.98760 0.93882 0.96514 1.21107 0.98449 0.99817 0.94709 1.21112 0.98764 0.94897 0.99351 1.21048 1.00559 0.95032 0.97678 1.21008 0.97772 0.99777 0.94594 0.91097 0.91041 0.91735 0.76276 0.91413 0.90809 0.90453 0.88553 0.89177 0.91387 0.90276 0.92038 0.77620 0.91821 0.86261 0.86231 0.86389 0.86246 0.86190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 8.90 37.16 0.33 -1.42 16 2 C -0.07 -0.87 2.90 -92.93 -0.27 -1.14 16 3 H 0.10 1.03 7.88 -51.93 -0.41 0.62 16 4 C 0.52 7.27 7.03 -10.98 -0.08 7.20 16 5 O -0.54 -9.11 15.13 5.56 0.08 -9.02 16 6 N -0.72 -9.25 5.35 -60.29 -0.32 -9.58 16 7 C 0.14 1.71 5.81 -4.04 -0.02 1.69 16 8 C 0.00 0.04 3.23 -71.44 -0.23 -0.19 16 9 H 0.08 0.80 7.91 -51.93 -0.41 0.39 16 10 C -0.13 -1.34 8.00 -26.20 -0.21 -1.55 16 11 C 0.00 0.06 7.71 -7.56 -0.06 0.00 16 12 N -0.43 -6.50 5.39 -237.97 -1.28 -7.79 16 13 C 0.01 0.11 5.05 -4.97 -0.03 0.08 16 14 C 0.44 9.98 7.85 -10.99 -0.09 9.90 16 15 O -0.57 -15.16 16.01 5.55 0.09 -15.07 16 16 N -0.57 -13.67 5.29 -10.96 -0.06 -13.73 16 17 C -0.30 -8.08 9.68 -14.93 -0.14 -8.23 16 18 H 0.10 2.91 7.16 -52.49 -0.38 2.53 16 19 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 20 N -0.90 -23.83 13.05 55.50 0.72 -23.10 16 21 Si 0.93 20.66 29.55 -169.99 -5.02 15.64 16 22 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 23 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 24 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 25 C -0.06 -0.78 4.39 -104.62 -0.46 -1.24 16 26 C -0.08 -1.07 7.94 -39.58 -0.31 -1.39 16 27 C -0.12 -1.39 10.05 -39.58 -0.40 -1.79 16 28 C -0.12 -1.27 10.05 -39.58 -0.40 -1.66 16 29 C -0.13 -1.28 10.05 -39.58 -0.40 -1.68 16 30 C -0.11 -1.26 9.67 -39.58 -0.38 -1.65 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 0.94 7.56 -51.93 -0.39 0.55 16 33 H 0.06 0.83 7.37 -51.93 -0.38 0.45 16 34 H 0.40 5.02 5.64 -40.82 -0.23 4.79 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.99 7.88 -51.93 -0.41 0.58 16 37 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.10 0.98 7.94 -51.93 -0.41 0.57 16 39 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.07 0.81 7.42 -51.93 -0.39 0.43 16 41 H 0.08 1.10 6.26 -51.93 -0.33 0.78 16 42 H 0.06 0.89 7.30 -51.93 -0.38 0.51 16 43 H 0.39 8.98 7.90 -40.82 -0.32 8.66 16 44 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 45 H 0.12 1.59 7.52 -52.48 -0.39 1.19 16 46 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 47 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 48 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 49 H 0.12 1.10 7.95 -52.49 -0.42 0.68 16 LS Contribution 403.63 15.07 6.08 6.08 Total: -1.00 -33.22 403.63 -10.29 -43.51 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: -7.34 Total: 15.63 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: -3.24 Total: -2.56 kcal Atomic # 7 Polarization: -53.26 SS G_CDS: -0.94 Total: -54.20 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: 0.17 Total: -24.09 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.22 -10.29 -43.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670713891.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.074 kcal (2) G-P(sol) polarization free energy of solvation -33.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds