Wall clock time and date at job start Wed Apr 1 2020 03:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47339 * 2 1 4 4 C 1.50694 * 109.47174 * 239.99710 * 2 1 3 5 5 O 1.21283 * 120.00363 * 239.99943 * 4 2 1 6 6 N 1.34784 * 119.99988 * 60.00061 * 4 2 1 7 7 C 1.46493 * 119.99864 * 179.72721 * 6 4 2 8 8 C 1.53001 * 109.47084 * 180.02562 * 7 6 4 9 9 H 1.08998 * 112.74846 * 75.76512 * 8 7 6 10 10 C 1.53517 * 113.47815 * 206.62155 * 8 7 6 11 11 C 1.53502 * 83.57589 * 140.78687 * 10 8 7 12 12 N 1.47476 * 87.93375 * 333.97388 * 11 10 8 13 13 C 1.46905 * 110.99888 * 138.70967 * 12 11 10 14 14 C 1.50700 * 109.47463 * 94.02945 * 13 12 11 15 15 O 1.21292 * 119.99643 * 359.97438 * 14 13 12 16 16 N 1.34775 * 119.99685 * 180.02562 * 14 13 12 17 17 C 1.37100 * 119.99687 * 179.97438 * 16 14 13 18 18 H 1.08001 * 120.00044 * 0.02562 * 17 16 14 19 19 C 1.38952 * 119.99766 * 179.97438 * 17 16 14 20 20 N 1.31404 * 120.00153 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99705 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47097 * 60.00153 * 21 19 17 23 23 H 1.48498 * 109.47063 * 180.02562 * 21 19 17 24 24 H 1.48507 * 109.47248 * 300.00337 * 21 19 17 25 25 C 1.50698 * 109.46939 * 119.99737 * 2 1 3 26 26 C 1.38237 * 120.00274 * 59.72992 * 25 2 1 27 27 C 1.38234 * 120.00254 * 179.78824 * 26 25 2 28 28 C 1.38234 * 119.99762 * 0.43381 * 27 26 25 29 29 C 1.38237 * 120.00420 * 359.81623 * 28 27 26 30 30 C 1.38234 * 120.00129 * 239.99801 * 25 2 1 31 31 H 1.08998 * 109.47223 * 299.99995 * 1 2 3 32 32 H 1.08995 * 109.47095 * 60.00224 * 1 2 3 33 33 H 1.09000 * 109.47156 * 180.02562 * 1 2 3 34 34 H 0.97000 * 119.99339 * 0.02562 * 6 4 2 35 35 H 1.09007 * 109.47196 * 299.99538 * 7 6 4 36 36 H 1.09006 * 109.47678 * 59.99732 * 7 6 4 37 37 H 1.08996 * 114.16457 * 254.43734 * 10 8 7 38 38 H 1.09002 * 114.16952 * 27.13321 * 10 8 7 39 39 H 1.09006 * 113.47463 * 219.20784 * 11 10 8 40 40 H 1.08995 * 113.53405 * 88.75253 * 11 10 8 41 41 H 1.08998 * 109.46807 * 214.03009 * 13 12 11 42 42 H 1.08998 * 109.46984 * 334.02295 * 13 12 11 43 43 H 0.96998 * 120.00496 * 359.97438 * 16 14 13 44 44 H 0.97002 * 119.99872 * 179.97438 * 20 19 17 45 45 H 1.08005 * 119.99660 * 359.97438 * 26 25 2 46 46 H 1.07990 * 120.00064 * 180.27446 * 27 26 25 47 47 H 1.08001 * 120.00369 * 179.83478 * 28 27 26 48 48 H 1.07999 * 120.00465 * 179.97438 * 29 28 27 49 49 H 1.08002 * 119.99947 * 359.97438 * 30 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.7296 -1.6965 -1.1191 6 7 1.7067 -0.2500 -2.4546 7 6 2.2000 -0.9372 -3.6506 8 6 1.6895 -0.2164 -4.8999 9 1 2.2247 0.7120 -5.0992 10 6 1.5697 -1.1305 -6.1274 11 6 0.2859 -0.3291 -6.3842 12 7 0.2226 -0.0678 -4.9342 13 6 -0.1723 1.3216 -4.6664 14 6 -1.6644 1.3901 -4.4660 15 8 -2.3331 0.3809 -4.5396 16 7 -2.2557 2.5730 -4.2062 17 6 -3.6131 2.6355 -4.0244 18 1 -4.2085 1.7367 -4.0891 19 6 -4.2228 3.8549 -3.7559 20 7 -3.4983 4.9483 -3.6768 21 14 -6.0724 3.9401 -3.5090 22 1 -6.4580 3.0851 -2.3577 23 1 -6.4715 5.3447 -3.2387 24 1 -6.7582 3.4583 -4.7350 25 6 2.0323 -0.7103 1.2305 26 6 1.6937 -2.0322 1.4522 27 6 2.1581 -2.6850 2.5787 28 6 2.9536 -2.0135 3.4881 29 6 3.2880 -0.6902 3.2691 30 6 2.8270 -0.0386 2.1404 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.1494 0.5389 -2.5435 35 1 3.2900 -0.9324 -3.6489 36 1 1.8412 -1.9665 -3.6524 37 1 2.3482 -0.9780 -6.8750 38 1 1.4002 -2.1802 -5.8874 39 1 -0.5398 -0.9381 -6.7522 40 1 0.4456 0.5691 -6.9807 41 1 0.3317 1.6756 -3.7671 42 1 0.1100 1.9489 -5.5119 43 1 -1.7209 3.3802 -4.1477 44 1 -3.9239 5.7997 -3.4897 45 1 1.0689 -2.5557 0.7437 46 1 1.8972 -3.7189 2.7496 47 1 3.3142 -2.5227 4.3696 48 1 3.9091 -0.1653 3.9798 49 1 3.0883 0.9953 1.9692 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670713891.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:12 Heat of formation + Delta-G solvation = -34.844022 kcal Electronic energy + Delta-G solvation = -30138.629110 eV Core-core repulsion = 26065.582859 eV Total energy + Delta-G solvation = -4073.046252 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.71778 -41.04257 -39.69051 -39.41027 -35.93678 -35.59516 -35.14056 -33.30477 -32.06157 -31.77639 -30.56232 -29.11774 -27.52992 -25.78051 -25.35547 -24.18240 -23.46052 -22.59156 -21.18310 -21.03969 -20.48659 -19.89598 -18.29498 -17.88038 -17.66358 -17.22194 -16.93579 -16.53056 -16.47827 -16.25518 -15.91468 -15.71885 -15.51599 -15.33079 -14.92756 -14.72620 -14.51010 -14.22159 -14.15891 -14.01834 -13.72994 -13.51664 -13.24525 -13.13392 -13.00072 -12.90552 -12.59966 -12.57392 -12.43566 -12.34259 -12.14617 -11.96167 -11.87874 -11.82359 -11.59858 -11.47325 -10.79368 -10.36352 -10.06556 -9.98748 -9.76617 -9.71026 -9.61742 -8.45236 -5.93023 0.43934 0.54601 1.39286 1.41841 1.51653 1.60124 2.06954 2.16266 2.29443 2.79980 2.95098 3.20848 3.36190 3.54861 3.56164 3.72846 3.80942 3.95401 4.09922 4.12082 4.15760 4.21057 4.26491 4.27758 4.31772 4.34088 4.40787 4.51470 4.60656 4.64597 4.66745 4.75432 4.82668 4.85331 4.89953 5.00062 5.09865 5.17111 5.18184 5.21717 5.31942 5.42481 5.50958 5.58527 5.64097 5.71170 5.93937 6.12279 6.13875 6.48299 6.63207 7.15741 7.19789 7.59332 8.16446 8.71698 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.008861 B = 0.002972 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3159.136831 B = 9417.636089 C =11851.864573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.067 4.067 3 H 0.127 0.873 4 C 0.516 3.484 5 O -0.571 6.571 6 N -0.716 5.716 7 C 0.141 3.859 8 C 0.015 3.985 9 H 0.110 0.890 10 C -0.114 4.114 11 C -0.004 4.004 12 N -0.468 5.468 13 C 0.020 3.980 14 C 0.443 3.557 15 O -0.618 6.618 16 N -0.574 5.574 17 C -0.331 4.331 18 H 0.075 0.925 19 C -0.009 4.009 20 N -0.918 5.918 21 Si 0.986 3.014 22 H -0.273 1.273 23 H -0.270 1.270 24 H -0.274 1.274 25 C -0.080 4.080 26 C -0.107 4.107 27 C -0.135 4.135 28 C -0.126 4.126 29 C -0.127 4.127 30 C -0.122 4.122 31 H 0.081 0.919 32 H 0.059 0.941 33 H 0.049 0.951 34 H 0.404 0.596 35 H 0.082 0.918 36 H 0.054 0.946 37 H 0.111 0.889 38 H 0.090 0.910 39 H 0.064 0.936 40 H 0.084 0.916 41 H 0.104 0.896 42 H 0.086 0.914 43 H 0.396 0.604 44 H 0.277 0.723 45 H 0.101 0.899 46 H 0.132 0.868 47 H 0.145 0.855 48 H 0.148 0.852 49 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.215 -5.749 6.225 19.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.088 4.088 3 H 0.145 0.855 4 C 0.303 3.697 5 O -0.451 6.451 6 N -0.367 5.367 7 C 0.017 3.983 8 C -0.094 4.094 9 H 0.128 0.872 10 C -0.152 4.152 11 C -0.132 4.132 12 N -0.191 5.191 13 C -0.111 4.111 14 C 0.230 3.770 15 O -0.503 6.503 16 N -0.211 5.211 17 C -0.460 4.460 18 H 0.093 0.907 19 C -0.209 4.209 20 N -0.559 5.559 21 Si 0.810 3.190 22 H -0.199 1.199 23 H -0.195 1.195 24 H -0.200 1.200 25 C -0.081 4.081 26 C -0.125 4.125 27 C -0.153 4.153 28 C -0.144 4.144 29 C -0.145 4.145 30 C -0.140 4.140 31 H 0.099 0.901 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.240 0.760 35 H 0.100 0.900 36 H 0.072 0.928 37 H 0.130 0.870 38 H 0.109 0.891 39 H 0.082 0.918 40 H 0.102 0.898 41 H 0.121 0.879 42 H 0.104 0.896 43 H 0.230 0.770 44 H 0.087 0.913 45 H 0.119 0.881 46 H 0.150 0.850 47 H 0.162 0.838 48 H 0.165 0.835 49 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 16.755 -7.292 6.717 19.469 hybrid contribution -0.981 1.363 -0.549 1.767 sum 15.774 -5.929 6.168 17.945 Atomic orbital electron populations 1.21736 0.91813 1.02392 1.03426 1.20315 0.97551 1.01014 0.89892 0.85549 1.20805 0.79468 0.84199 0.85217 1.90674 1.39624 1.27528 1.87236 1.45961 1.52984 1.32355 1.05422 1.21357 0.98747 0.95854 0.82333 1.23845 0.89691 1.00567 0.95318 0.87245 1.23094 0.96992 0.98877 0.96255 1.23843 0.99081 1.00646 0.89668 1.68819 1.12774 1.20782 1.16764 1.22455 0.92533 0.92615 1.03546 1.20731 0.90747 0.83179 0.82294 1.90512 1.66796 1.36093 1.56940 1.41912 1.07656 1.08487 1.63095 1.19545 0.84097 0.94955 1.47424 0.90730 1.25913 1.04249 0.94178 0.96538 1.69643 1.37838 0.99300 1.49125 0.85096 0.77542 0.77599 0.78774 1.19854 1.19459 1.19967 1.19466 0.98791 0.94477 0.95323 1.20981 0.99751 0.94597 0.97212 1.21358 0.98714 1.00654 0.94560 1.21471 0.97930 0.95198 0.99762 1.21448 1.00178 0.95135 0.97728 1.21316 0.97276 1.00820 0.94542 0.90051 0.92200 0.93207 0.76012 0.89993 0.92777 0.87042 0.89106 0.91780 0.89805 0.87852 0.89571 0.76983 0.91342 0.88075 0.84981 0.83772 0.83473 0.84157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.43 8.90 71.98 0.64 -2.79 16 2 C -0.07 -1.58 2.90 -12.29 -0.04 -1.61 16 3 H 0.13 2.34 7.88 -2.39 -0.02 2.32 16 4 C 0.52 14.47 7.03 87.65 0.62 15.08 16 5 O -0.57 -19.66 15.13 -3.04 -0.05 -19.71 16 6 N -0.72 -17.90 5.35 -463.05 -2.48 -20.38 16 7 C 0.14 3.23 5.81 86.38 0.50 3.73 16 8 C 0.02 0.31 3.23 42.19 0.14 0.44 16 9 H 0.11 1.67 7.91 -2.39 -0.02 1.65 16 10 C -0.11 -2.03 8.00 30.94 0.25 -1.79 16 11 C 0.00 -0.09 7.71 83.57 0.64 0.55 16 12 N -0.47 -13.64 5.39 -906.79 -4.89 -18.53 16 13 C 0.02 0.63 5.05 85.56 0.43 1.06 16 14 C 0.44 20.17 7.85 87.66 0.69 20.86 16 15 O -0.62 -33.95 16.01 -3.07 -0.05 -34.00 16 16 N -0.57 -28.13 5.29 -306.98 -1.62 -29.75 16 17 C -0.33 -18.33 9.68 84.04 0.81 -17.51 16 18 H 0.07 4.47 7.16 -2.91 -0.02 4.45 16 19 C -0.01 -0.46 5.50 84.93 0.47 0.01 16 20 N -0.92 -48.03 13.05 21.66 0.28 -47.74 16 21 Si 0.99 42.31 29.55 68.60 2.03 44.34 16 22 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 23 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 24 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 25 C -0.08 -1.99 4.39 -19.87 -0.09 -2.08 16 26 C -0.11 -2.86 7.94 22.27 0.18 -2.68 16 27 C -0.13 -3.03 10.05 22.27 0.22 -2.81 16 28 C -0.13 -2.37 10.05 22.27 0.22 -2.14 16 29 C -0.13 -2.31 10.05 22.27 0.22 -2.09 16 30 C -0.12 -2.51 9.67 22.27 0.22 -2.29 16 31 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.06 1.62 7.56 -2.39 -0.02 1.60 16 33 H 0.05 1.37 7.37 -2.39 -0.02 1.35 16 34 H 0.40 9.66 5.64 -92.71 -0.52 9.13 16 35 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 36 H 0.05 1.46 7.88 -2.38 -0.02 1.44 16 37 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.09 1.74 7.94 -2.39 -0.02 1.72 16 39 H 0.06 1.90 8.14 -2.38 -0.02 1.89 16 40 H 0.08 1.81 7.42 -2.39 -0.02 1.79 16 41 H 0.10 2.66 6.26 -2.39 -0.01 2.65 16 42 H 0.09 2.26 7.30 -2.39 -0.02 2.24 16 43 H 0.40 18.22 7.90 -92.71 -0.73 17.49 16 44 H 0.28 13.66 8.31 -92.71 -0.77 12.89 16 45 H 0.10 2.94 7.52 -2.91 -0.02 2.92 16 46 H 0.13 2.46 8.06 -2.92 -0.02 2.44 16 47 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 48 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 49 H 0.14 2.21 7.95 -2.91 -0.02 2.19 16 Total: -1.00 -74.56 403.63 -0.93 -75.48 By element: Atomic # 1 Polarization: 46.63 SS G_CDS: -0.28 Total: 46.35 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: 6.13 Total: 3.94 kcal Atomic # 7 Polarization: -107.70 SS G_CDS: -8.71 Total: -116.40 kcal Atomic # 8 Polarization: -53.61 SS G_CDS: -0.10 Total: -53.71 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Total: -74.56 -0.93 -75.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670713891.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.640 kcal (2) G-P(sol) polarization free energy of solvation -74.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds